data_6C71 # _model_server_result.job_id fVnirraZYK069-jEpqKXOQ _model_server_result.datetime_utc '2024-11-22 05:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6C71 # _exptl.entry_id 6C71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C71 _cell.length_a 86.763 _cell.length_b 135.105 _cell.length_c 167.731 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,I,J,O 2 1 D,K,L,P 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_564 -x+1/2,-y+1,z-1/2 -1 0 0 0 -1 0 0 0 1 43.3815 135.105 -83.8655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6C71 _atom_sites.fract_transf_matrix[1][1] 0.011526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NCT A 1 501 2 NCT NCT . F 3 FAD A 1 502 1 FAD FVN . G 2 NCT B 1 501 3 NCT NCT . H 3 FAD B 1 502 2 FAD FVN . I 2 NCT C 1 501 4 NCT NCT . J 3 FAD C 1 502 3 FAD FVN . K 2 NCT D 1 501 1 NCT NCT . L 3 FAD D 1 502 4 FAD FVN . M 4 HOH A 1 601 80 HOH HOH . M 4 HOH A 2 602 76 HOH HOH . M 4 HOH A 3 603 44 HOH HOH . M 4 HOH A 4 604 73 HOH HOH . M 4 HOH A 5 605 26 HOH HOH . M 4 HOH A 6 606 2 HOH HOH . M 4 HOH A 7 607 82 HOH HOH . M 4 HOH A 8 608 78 HOH HOH . M 4 HOH A 9 609 7 HOH HOH . M 4 HOH A 10 610 75 HOH HOH . M 4 HOH A 11 611 61 HOH HOH . M 4 HOH A 12 612 25 HOH HOH . M 4 HOH A 13 613 3 HOH HOH . M 4 HOH A 14 614 1 HOH HOH . M 4 HOH A 15 615 77 HOH HOH . M 4 HOH A 16 616 81 HOH HOH . M 4 HOH A 17 617 37 HOH HOH . M 4 HOH A 18 618 33 HOH HOH . M 4 HOH A 19 619 74 HOH HOH . M 4 HOH A 20 620 30 HOH HOH . M 4 HOH A 21 621 79 HOH HOH . M 4 HOH A 22 622 58 HOH HOH . M 4 HOH A 23 623 23 HOH HOH . M 4 HOH A 24 624 27 HOH HOH . M 4 HOH A 25 625 17 HOH HOH . M 4 HOH A 26 626 63 HOH HOH . M 4 HOH A 27 627 24 HOH HOH . M 4 HOH A 28 628 21 HOH HOH . N 4 HOH B 1 601 34 HOH HOH . N 4 HOH B 2 602 83 HOH HOH . N 4 HOH B 3 603 62 HOH HOH . N 4 HOH B 4 604 86 HOH HOH . N 4 HOH B 5 605 88 HOH HOH . N 4 HOH B 6 606 36 HOH HOH . N 4 HOH B 7 607 32 HOH HOH . N 4 HOH B 8 608 11 HOH HOH . N 4 HOH B 9 609 51 HOH HOH . N 4 HOH B 10 610 4 HOH HOH . N 4 HOH B 11 611 90 HOH HOH . N 4 HOH B 12 612 92 HOH HOH . N 4 HOH B 13 613 85 HOH HOH . N 4 HOH B 14 614 49 HOH HOH . N 4 HOH B 15 615 89 HOH HOH . N 4 HOH B 16 616 28 HOH HOH . N 4 HOH B 17 617 8 HOH HOH . N 4 HOH B 18 618 91 HOH HOH . N 4 HOH B 19 619 93 HOH HOH . N 4 HOH B 20 620 39 HOH HOH . N 4 HOH B 21 621 84 HOH HOH . N 4 HOH B 22 622 53 HOH HOH . N 4 HOH B 23 623 14 HOH HOH . N 4 HOH B 24 624 87 HOH HOH . O 4 HOH C 1 601 104 HOH HOH . O 4 HOH C 2 602 55 HOH HOH . O 4 HOH C 3 603 9 HOH HOH . O 4 HOH C 4 604 54 HOH HOH . O 4 HOH C 5 605 60 HOH HOH . O 4 HOH C 6 606 99 HOH HOH . O 4 HOH C 7 607 96 HOH HOH . O 4 HOH C 8 608 98 HOH HOH . O 4 HOH C 9 609 103 HOH HOH . O 4 HOH C 10 610 12 HOH HOH . O 4 HOH C 11 611 45 HOH HOH . O 4 HOH C 12 612 101 HOH HOH . O 4 HOH C 13 613 105 HOH HOH . O 4 HOH C 14 614 94 HOH HOH . O 4 HOH C 15 615 15 HOH HOH . O 4 HOH C 16 616 5 HOH HOH . O 4 HOH C 17 617 16 HOH HOH . O 4 HOH C 18 618 29 HOH HOH . O 4 HOH C 19 619 97 HOH HOH . O 4 HOH C 20 620 10 HOH HOH . O 4 HOH C 21 621 102 HOH HOH . O 4 HOH C 22 622 50 HOH HOH . O 4 HOH C 23 623 100 HOH HOH . O 4 HOH C 24 624 48 HOH HOH . O 4 HOH C 25 625 19 HOH HOH . O 4 HOH C 26 626 41 HOH HOH . O 4 HOH C 27 627 18 HOH HOH . O 4 HOH C 28 628 64 HOH HOH . O 4 HOH C 29 629 95 HOH HOH . O 4 HOH C 30 630 20 HOH HOH . O 4 HOH C 31 631 59 HOH HOH . O 4 HOH C 32 632 43 HOH HOH . O 4 HOH C 33 633 47 HOH HOH . O 4 HOH C 34 634 52 HOH HOH . O 4 HOH C 35 635 40 HOH HOH . O 4 HOH C 36 636 38 HOH HOH . O 4 HOH C 37 637 46 HOH HOH . O 4 HOH C 38 638 42 HOH HOH . P 4 HOH D 1 601 67 HOH HOH . P 4 HOH D 2 602 31 HOH HOH . P 4 HOH D 3 603 71 HOH HOH . P 4 HOH D 4 604 65 HOH HOH . P 4 HOH D 5 605 70 HOH HOH . P 4 HOH D 6 606 56 HOH HOH . P 4 HOH D 7 607 66 HOH HOH . P 4 HOH D 8 608 69 HOH HOH . P 4 HOH D 9 609 68 HOH HOH . P 4 HOH D 10 610 6 HOH HOH . P 4 HOH D 11 611 35 HOH HOH . P 4 HOH D 12 612 72 HOH HOH . P 4 HOH D 13 613 22 HOH HOH . P 4 HOH D 14 614 57 HOH HOH . P 4 HOH D 15 615 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 3 10.844 79.321 88.226 1 42.04 ? PA FAD 502 A 1 HETATM 2 O O1A FAD . . . F 3 10.495 80.077 89.456 1 48.05 ? O1A FAD 502 A 1 HETATM 3 O O2A FAD . . . F 3 9.943 78.084 87.946 1 42.71 ? O2A FAD 502 A 1 HETATM 4 O O5B FAD . . . F 3 12.403 78.92 88.234 1 42.61 ? O5B FAD 502 A 1 HETATM 5 C C5B FAD . . . F 3 13.408 79.78 88.729 1 46.29 ? C5B FAD 502 A 1 HETATM 6 C C4B FAD . . . F 3 14.446 78.947 89.471 1 47.07 ? C4B FAD 502 A 1 HETATM 7 O O4B FAD . . . F 3 15.445 79.828 89.921 1 48.76 ? O4B FAD 502 A 1 HETATM 8 C C3B FAD . . . F 3 13.845 78.303 90.712 1 47.37 ? C3B FAD 502 A 1 HETATM 9 O O3B FAD . . . F 3 14.186 76.924 90.724 1 43.71 ? O3B FAD 502 A 1 HETATM 10 C C2B FAD . . . F 3 14.523 78.986 91.866 1 46.46 ? C2B FAD 502 A 1 HETATM 11 O O2B FAD . . . F 3 14.733 78.019 92.877 1 42.02 ? O2B FAD 502 A 1 HETATM 12 C C1B FAD . . . F 3 15.817 79.499 91.248 1 49.21 ? C1B FAD 502 A 1 HETATM 13 N N9A FAD . . . F 3 16.477 80.689 91.836 1 50.02 ? N9A FAD 502 A 1 HETATM 14 C C8A FAD . . . F 3 15.945 81.873 92.293 1 51.64 ? C8A FAD 502 A 1 HETATM 15 N N7A FAD . . . F 3 16.939 82.685 92.745 1 47.57 ? N7A FAD 502 A 1 HETATM 16 C C5A FAD . . . F 3 18.119 82.033 92.58 1 48.95 ? C5A FAD 502 A 1 HETATM 17 C C6A FAD . . . F 3 19.45 82.384 92.863 1 48.52 ? C6A FAD 502 A 1 HETATM 18 N N6A FAD . . . F 3 19.796 83.588 93.42 1 48.76 ? N6A FAD 502 A 1 HETATM 19 N N1A FAD . . . F 3 20.421 81.436 92.546 1 46.27 ? N1A FAD 502 A 1 HETATM 20 C C2A FAD . . . F 3 20.131 80.209 91.986 1 49.92 ? C2A FAD 502 A 1 HETATM 21 N N3A FAD . . . F 3 18.82 79.901 91.721 1 43.48 ? N3A FAD 502 A 1 HETATM 22 C C4A FAD . . . F 3 17.84 80.787 92.008 1 45.33 ? C4A FAD 502 A 1 HETATM 23 N N1 FAD . . . F 3 1.652 77.553 84.938 1 47.1 ? N1 FAD 502 A 1 HETATM 24 C C2 FAD . . . F 3 0.996 76.653 84.098 1 47.41 ? C2 FAD 502 A 1 HETATM 25 O O2 FAD . . . F 3 1.377 76.514 82.927 1 52.24 ? O2 FAD 502 A 1 HETATM 26 N N3 FAD . . . F 3 -0.089 75.894 84.541 1 44.75 ? N3 FAD 502 A 1 HETATM 27 C C4 FAD . . . F 3 -0.522 76.037 85.847 1 45.13 ? C4 FAD 502 A 1 HETATM 28 O O4 FAD . . . F 3 -1.479 75.389 86.29 1 49.27 ? O4 FAD 502 A 1 HETATM 29 C C4X FAD . . . F 3 0.117 76.93 86.693 1 51.19 ? C4X FAD 502 A 1 HETATM 30 N N5 FAD . . . F 3 -0.337 77.055 88.001 1 48.65 ? N5 FAD 502 A 1 HETATM 31 C C5X FAD . . . F 3 0.289 77.868 88.907 1 53.29 ? C5X FAD 502 A 1 HETATM 32 C C6 FAD . . . F 3 -0.023 77.682 90.253 1 55.3 ? C6 FAD 502 A 1 HETATM 33 C C7 FAD . . . F 3 0.924 77.973 91.235 1 49.3 ? C7 FAD 502 A 1 HETATM 34 C C7M FAD . . . F 3 0.527 77.745 92.685 1 52.68 ? C7M FAD 502 A 1 HETATM 35 C C8 FAD . . . F 3 2.192 78.46 90.848 1 54.61 ? C8 FAD 502 A 1 HETATM 36 C C8M FAD . . . F 3 3.284 78.805 91.84 1 45.72 ? C8M FAD 502 A 1 HETATM 37 C C9 FAD . . . F 3 2.482 78.643 89.494 1 50.47 ? C9 FAD 502 A 1 HETATM 38 C C9A FAD . . . F 3 1.549 78.355 88.518 1 52.78 ? C9A FAD 502 A 1 HETATM 39 N N10 FAD . . . F 3 1.799 78.551 87.154 1 52.64 ? N10 FAD 502 A 1 HETATM 40 C C10 FAD . . . F 3 1.208 77.688 86.245 1 52.15 ? C10 FAD 502 A 1 HETATM 41 C C1' FAD . . . F 3 2.959 79.389 86.721 1 47.09 ? C1' FAD 502 A 1 HETATM 42 C C2' FAD . . . F 3 4.241 78.611 86.508 1 44.17 ? C2' FAD 502 A 1 HETATM 43 O O2' FAD . . . F 3 4.34 77.32 87.042 1 46.1 ? O2' FAD 502 A 1 HETATM 44 C C3' FAD . . . F 3 5.498 79.422 86.167 1 48.3 ? C3' FAD 502 A 1 HETATM 45 O O3' FAD . . . F 3 5.185 80.241 85.069 1 42.97 ? O3' FAD 502 A 1 HETATM 46 C C4' FAD . . . F 3 6.675 78.619 85.647 1 45.1 ? C4' FAD 502 A 1 HETATM 47 O O4' FAD . . . F 3 6.962 77.521 86.484 1 50.38 ? O4' FAD 502 A 1 HETATM 48 C C5' FAD . . . F 3 7.826 79.606 85.554 1 40.12 ? C5' FAD 502 A 1 HETATM 49 O O5' FAD . . . F 3 9.034 78.909 85.459 1 44.01 ? O5' FAD 502 A 1 HETATM 50 P P FAD . . . F 3 10.439 79.726 85.423 1 44.96 ? P FAD 502 A 1 HETATM 51 O O1P FAD . . . F 3 11.559 78.846 84.951 1 41.31 ? O1P FAD 502 A 1 HETATM 52 O O2P FAD . . . F 3 10.207 80.887 84.422 1 43.77 ? O2P FAD 502 A 1 HETATM 53 O O3P FAD . . . F 3 10.718 80.188 86.789 1 54.94 ? O3P FAD 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #