data_6C7M # _model_server_result.job_id kgfEQsx_xMqyioTvbypcoA _model_server_result.datetime_utc '2025-03-06 07:50:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6C7M # _exptl.entry_id 6C7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C7M _cell.length_a 96.664 _cell.length_b 96.664 _cell.length_c 156.182 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 6C7M _atom_sites.fract_transf_matrix[1][1] 0.010345 _atom_sites.fract_transf_matrix[1][2] 0.005973 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 301 1 MPD MPD . C 2 MPD A 1 302 2 MPD MPD . D 2 MPD A 1 303 3 MPD MPD . E 3 HOH A 1 401 290 HOH HOH . E 3 HOH A 2 402 286 HOH HOH . E 3 HOH A 3 403 273 HOH HOH . E 3 HOH A 4 404 72 HOH HOH . E 3 HOH A 5 405 180 HOH HOH . E 3 HOH A 6 406 192 HOH HOH . E 3 HOH A 7 407 53 HOH HOH . E 3 HOH A 8 408 292 HOH HOH . E 3 HOH A 9 409 223 HOH HOH . E 3 HOH A 10 410 250 HOH HOH . E 3 HOH A 11 411 10 HOH HOH . E 3 HOH A 12 412 164 HOH HOH . E 3 HOH A 13 413 293 HOH HOH . E 3 HOH A 14 414 168 HOH HOH . E 3 HOH A 15 415 157 HOH HOH . E 3 HOH A 16 416 225 HOH HOH . E 3 HOH A 17 417 11 HOH HOH . E 3 HOH A 18 418 227 HOH HOH . E 3 HOH A 19 419 216 HOH HOH . E 3 HOH A 20 420 3 HOH HOH . E 3 HOH A 21 421 99 HOH HOH . E 3 HOH A 22 422 94 HOH HOH . E 3 HOH A 23 423 199 HOH HOH . E 3 HOH A 24 424 206 HOH HOH . E 3 HOH A 25 425 203 HOH HOH . E 3 HOH A 26 426 56 HOH HOH . E 3 HOH A 27 427 245 HOH HOH . E 3 HOH A 28 428 32 HOH HOH . E 3 HOH A 29 429 92 HOH HOH . E 3 HOH A 30 430 185 HOH HOH . E 3 HOH A 31 431 49 HOH HOH . E 3 HOH A 32 432 124 HOH HOH . E 3 HOH A 33 433 117 HOH HOH . E 3 HOH A 34 434 35 HOH HOH . E 3 HOH A 35 435 114 HOH HOH . E 3 HOH A 36 436 54 HOH HOH . E 3 HOH A 37 437 115 HOH HOH . E 3 HOH A 38 438 1 HOH HOH . E 3 HOH A 39 439 60 HOH HOH . E 3 HOH A 40 440 200 HOH HOH . E 3 HOH A 41 441 232 HOH HOH . E 3 HOH A 42 442 173 HOH HOH . E 3 HOH A 43 443 150 HOH HOH . E 3 HOH A 44 444 48 HOH HOH . E 3 HOH A 45 445 22 HOH HOH . E 3 HOH A 46 446 122 HOH HOH . E 3 HOH A 47 447 262 HOH HOH . E 3 HOH A 48 448 101 HOH HOH . E 3 HOH A 49 449 80 HOH HOH . E 3 HOH A 50 450 69 HOH HOH . E 3 HOH A 51 451 183 HOH HOH . E 3 HOH A 52 452 78 HOH HOH . E 3 HOH A 53 453 176 HOH HOH . E 3 HOH A 54 454 25 HOH HOH . E 3 HOH A 55 455 9 HOH HOH . E 3 HOH A 56 456 187 HOH HOH . E 3 HOH A 57 457 40 HOH HOH . E 3 HOH A 58 458 26 HOH HOH . E 3 HOH A 59 459 197 HOH HOH . E 3 HOH A 60 460 191 HOH HOH . E 3 HOH A 61 461 263 HOH HOH . E 3 HOH A 62 462 102 HOH HOH . E 3 HOH A 63 463 194 HOH HOH . E 3 HOH A 64 464 45 HOH HOH . E 3 HOH A 65 465 195 HOH HOH . E 3 HOH A 66 466 166 HOH HOH . E 3 HOH A 67 467 240 HOH HOH . E 3 HOH A 68 468 63 HOH HOH . E 3 HOH A 69 469 196 HOH HOH . E 3 HOH A 70 470 291 HOH HOH . E 3 HOH A 71 471 139 HOH HOH . E 3 HOH A 72 472 23 HOH HOH . E 3 HOH A 73 473 217 HOH HOH . E 3 HOH A 74 474 100 HOH HOH . E 3 HOH A 75 475 13 HOH HOH . E 3 HOH A 76 476 42 HOH HOH . E 3 HOH A 77 477 50 HOH HOH . E 3 HOH A 78 478 76 HOH HOH . E 3 HOH A 79 479 118 HOH HOH . E 3 HOH A 80 480 47 HOH HOH . E 3 HOH A 81 481 27 HOH HOH . E 3 HOH A 82 482 95 HOH HOH . E 3 HOH A 83 483 43 HOH HOH . E 3 HOH A 84 484 230 HOH HOH . E 3 HOH A 85 485 104 HOH HOH . E 3 HOH A 86 486 73 HOH HOH . E 3 HOH A 87 487 123 HOH HOH . E 3 HOH A 88 488 141 HOH HOH . E 3 HOH A 89 489 221 HOH HOH . E 3 HOH A 90 490 288 HOH HOH . E 3 HOH A 91 491 66 HOH HOH . E 3 HOH A 92 492 283 HOH HOH . E 3 HOH A 93 493 8 HOH HOH . E 3 HOH A 94 494 14 HOH HOH . E 3 HOH A 95 495 67 HOH HOH . E 3 HOH A 96 496 86 HOH HOH . E 3 HOH A 97 497 212 HOH HOH . E 3 HOH A 98 498 239 HOH HOH . E 3 HOH A 99 499 19 HOH HOH . E 3 HOH A 100 500 264 HOH HOH . E 3 HOH A 101 501 4 HOH HOH . E 3 HOH A 102 502 82 HOH HOH . E 3 HOH A 103 503 204 HOH HOH . E 3 HOH A 104 504 46 HOH HOH . E 3 HOH A 105 505 224 HOH HOH . E 3 HOH A 106 506 111 HOH HOH . E 3 HOH A 107 507 135 HOH HOH . E 3 HOH A 108 508 7 HOH HOH . E 3 HOH A 109 509 213 HOH HOH . E 3 HOH A 110 510 158 HOH HOH . E 3 HOH A 111 511 33 HOH HOH . E 3 HOH A 112 512 41 HOH HOH . E 3 HOH A 113 513 31 HOH HOH . E 3 HOH A 114 514 17 HOH HOH . E 3 HOH A 115 515 62 HOH HOH . E 3 HOH A 116 516 126 HOH HOH . E 3 HOH A 117 517 234 HOH HOH . E 3 HOH A 118 518 244 HOH HOH . E 3 HOH A 119 519 113 HOH HOH . E 3 HOH A 120 520 83 HOH HOH . E 3 HOH A 121 521 75 HOH HOH . E 3 HOH A 122 522 201 HOH HOH . E 3 HOH A 123 523 163 HOH HOH . E 3 HOH A 124 524 205 HOH HOH . E 3 HOH A 125 525 79 HOH HOH . E 3 HOH A 126 526 55 HOH HOH . E 3 HOH A 127 527 6 HOH HOH . E 3 HOH A 128 528 15 HOH HOH . E 3 HOH A 129 529 119 HOH HOH . E 3 HOH A 130 530 218 HOH HOH . E 3 HOH A 131 531 30 HOH HOH . E 3 HOH A 132 532 38 HOH HOH . E 3 HOH A 133 533 211 HOH HOH . E 3 HOH A 134 534 266 HOH HOH . E 3 HOH A 135 535 16 HOH HOH . E 3 HOH A 136 536 44 HOH HOH . E 3 HOH A 137 537 59 HOH HOH . E 3 HOH A 138 538 121 HOH HOH . E 3 HOH A 139 539 91 HOH HOH . E 3 HOH A 140 540 34 HOH HOH . E 3 HOH A 141 541 140 HOH HOH . E 3 HOH A 142 542 142 HOH HOH . E 3 HOH A 143 543 21 HOH HOH . E 3 HOH A 144 544 236 HOH HOH . E 3 HOH A 145 545 219 HOH HOH . E 3 HOH A 146 546 120 HOH HOH . E 3 HOH A 147 547 128 HOH HOH . E 3 HOH A 148 548 112 HOH HOH . E 3 HOH A 149 549 107 HOH HOH . E 3 HOH A 150 550 207 HOH HOH . E 3 HOH A 151 551 198 HOH HOH . E 3 HOH A 152 552 149 HOH HOH . E 3 HOH A 153 553 249 HOH HOH . E 3 HOH A 154 554 202 HOH HOH . E 3 HOH A 155 555 193 HOH HOH . E 3 HOH A 156 556 248 HOH HOH . E 3 HOH A 157 557 103 HOH HOH . E 3 HOH A 158 558 18 HOH HOH . E 3 HOH A 159 559 52 HOH HOH . E 3 HOH A 160 560 71 HOH HOH . E 3 HOH A 161 561 143 HOH HOH . E 3 HOH A 162 562 5 HOH HOH . E 3 HOH A 163 563 87 HOH HOH . E 3 HOH A 164 564 36 HOH HOH . E 3 HOH A 165 565 12 HOH HOH . E 3 HOH A 166 566 152 HOH HOH . E 3 HOH A 167 567 235 HOH HOH . E 3 HOH A 168 568 220 HOH HOH . E 3 HOH A 169 569 39 HOH HOH . E 3 HOH A 170 570 70 HOH HOH . E 3 HOH A 171 571 261 HOH HOH . E 3 HOH A 172 572 20 HOH HOH . E 3 HOH A 173 573 51 HOH HOH . E 3 HOH A 174 574 137 HOH HOH . E 3 HOH A 175 575 61 HOH HOH . E 3 HOH A 176 576 29 HOH HOH . E 3 HOH A 177 577 238 HOH HOH . E 3 HOH A 178 578 155 HOH HOH . E 3 HOH A 179 579 287 HOH HOH . E 3 HOH A 180 580 182 HOH HOH . E 3 HOH A 181 581 24 HOH HOH . E 3 HOH A 182 582 162 HOH HOH . E 3 HOH A 183 583 284 HOH HOH . E 3 HOH A 184 584 147 HOH HOH . E 3 HOH A 185 585 127 HOH HOH . E 3 HOH A 186 586 2 HOH HOH . E 3 HOH A 187 587 190 HOH HOH . E 3 HOH A 188 588 93 HOH HOH . E 3 HOH A 189 589 116 HOH HOH . E 3 HOH A 190 590 209 HOH HOH . E 3 HOH A 191 591 214 HOH HOH . E 3 HOH A 192 592 74 HOH HOH . E 3 HOH A 193 593 228 HOH HOH . E 3 HOH A 194 594 97 HOH HOH . E 3 HOH A 195 595 188 HOH HOH . E 3 HOH A 196 596 160 HOH HOH . E 3 HOH A 197 597 37 HOH HOH . E 3 HOH A 198 598 267 HOH HOH . E 3 HOH A 199 599 237 HOH HOH . E 3 HOH A 200 600 58 HOH HOH . E 3 HOH A 201 601 145 HOH HOH . E 3 HOH A 202 602 265 HOH HOH . E 3 HOH A 203 603 153 HOH HOH . E 3 HOH A 204 604 226 HOH HOH . E 3 HOH A 205 605 77 HOH HOH . E 3 HOH A 206 606 186 HOH HOH . E 3 HOH A 207 607 210 HOH HOH . E 3 HOH A 208 608 184 HOH HOH . E 3 HOH A 209 609 181 HOH HOH . E 3 HOH A 210 610 247 HOH HOH . E 3 HOH A 211 611 57 HOH HOH . E 3 HOH A 212 612 285 HOH HOH . E 3 HOH A 213 613 208 HOH HOH . E 3 HOH A 214 614 278 HOH HOH . E 3 HOH A 215 615 277 HOH HOH . E 3 HOH A 216 616 255 HOH HOH . E 3 HOH A 217 617 159 HOH HOH . E 3 HOH A 218 618 169 HOH HOH . E 3 HOH A 219 619 215 HOH HOH . E 3 HOH A 220 620 229 HOH HOH . E 3 HOH A 221 621 165 HOH HOH . E 3 HOH A 222 622 282 HOH HOH . E 3 HOH A 223 623 136 HOH HOH . E 3 HOH A 224 624 189 HOH HOH . E 3 HOH A 225 625 281 HOH HOH . E 3 HOH A 226 626 272 HOH HOH . E 3 HOH A 227 627 269 HOH HOH . E 3 HOH A 228 628 256 HOH HOH . E 3 HOH A 229 629 172 HOH HOH . E 3 HOH A 230 630 96 HOH HOH . E 3 HOH A 231 631 144 HOH HOH . E 3 HOH A 232 632 242 HOH HOH . E 3 HOH A 233 633 125 HOH HOH . E 3 HOH A 234 634 84 HOH HOH . E 3 HOH A 235 635 131 HOH HOH . E 3 HOH A 236 636 65 HOH HOH . E 3 HOH A 237 637 109 HOH HOH . E 3 HOH A 238 638 161 HOH HOH . E 3 HOH A 239 639 251 HOH HOH . E 3 HOH A 240 640 258 HOH HOH . E 3 HOH A 241 641 179 HOH HOH . E 3 HOH A 242 642 260 HOH HOH . E 3 HOH A 243 643 177 HOH HOH . E 3 HOH A 244 644 253 HOH HOH . E 3 HOH A 245 645 106 HOH HOH . E 3 HOH A 246 646 295 HOH HOH . E 3 HOH A 247 647 85 HOH HOH . E 3 HOH A 248 648 259 HOH HOH . E 3 HOH A 249 649 246 HOH HOH . E 3 HOH A 250 650 299 HOH HOH . E 3 HOH A 251 651 257 HOH HOH . E 3 HOH A 252 652 110 HOH HOH . E 3 HOH A 253 653 175 HOH HOH . E 3 HOH A 254 654 138 HOH HOH . E 3 HOH A 255 655 297 HOH HOH . E 3 HOH A 256 656 68 HOH HOH . E 3 HOH A 257 657 243 HOH HOH . E 3 HOH A 258 658 129 HOH HOH . E 3 HOH A 259 659 275 HOH HOH . E 3 HOH A 260 660 64 HOH HOH . E 3 HOH A 261 661 271 HOH HOH . E 3 HOH A 262 662 279 HOH HOH . E 3 HOH A 263 663 298 HOH HOH . E 3 HOH A 264 664 254 HOH HOH . E 3 HOH A 265 665 108 HOH HOH . E 3 HOH A 266 666 294 HOH HOH . E 3 HOH A 267 667 81 HOH HOH . E 3 HOH A 268 668 252 HOH HOH . E 3 HOH A 269 669 88 HOH HOH . E 3 HOH A 270 671 134 HOH HOH . E 3 HOH A 271 672 130 HOH HOH . E 3 HOH A 272 673 89 HOH HOH . E 3 HOH A 273 674 148 HOH HOH . E 3 HOH A 274 675 28 HOH HOH . E 3 HOH A 275 676 90 HOH HOH . E 3 HOH A 276 677 270 HOH HOH . E 3 HOH A 277 678 296 HOH HOH . E 3 HOH A 278 679 98 HOH HOH . E 3 HOH A 279 680 274 HOH HOH . E 3 HOH A 280 681 268 HOH HOH . E 3 HOH A 281 682 174 HOH HOH . E 3 HOH A 282 683 154 HOH HOH . E 3 HOH A 283 684 233 HOH HOH . E 3 HOH A 284 685 231 HOH HOH . E 3 HOH A 285 686 171 HOH HOH . E 3 HOH A 286 687 156 HOH HOH . E 3 HOH A 287 688 146 HOH HOH . E 3 HOH A 288 689 133 HOH HOH . E 3 HOH A 289 690 167 HOH HOH . E 3 HOH A 290 691 241 HOH HOH . E 3 HOH A 291 692 178 HOH HOH . E 3 HOH A 292 693 222 HOH HOH . E 3 HOH A 293 694 151 HOH HOH . E 3 HOH A 294 695 170 HOH HOH . E 3 HOH A 295 696 132 HOH HOH . E 3 HOH A 296 697 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -22.846 7.558 -9.557 1 41.32 ? C1 MPD 301 A 1 HETATM 2 C C2 MPD . . . B 2 -22.292 6.699 -10.684 1 56.15 ? C2 MPD 301 A 1 HETATM 3 O O2 MPD . . . B 2 -21.387 7.507 -11.478 1 58.97 ? O2 MPD 301 A 1 HETATM 4 C CM MPD . . . B 2 -21.513 5.515 -10.119 1 47.49 ? CM MPD 301 A 1 HETATM 5 C C3 MPD . . . B 2 -23.44 6.253 -11.583 1 43.16 ? C3 MPD 301 A 1 HETATM 6 C C4 MPD . . . B 2 -24.204 5.056 -11.038 1 42.73 ? C4 MPD 301 A 1 HETATM 7 O O4 MPD . . . B 2 -25.228 5.494 -10.181 1 44.81 ? O4 MPD 301 A 1 HETATM 8 C C5 MPD . . . B 2 -24.839 4.286 -12.187 1 33.37 ? C5 MPD 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #