data_6C7Y # _model_server_result.job_id KGObLVT98fVco4IH23fBUA _model_server_result.datetime_utc '2024-11-25 13:59:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 6C7Y # _exptl.entry_id 6C7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C7Y _cell.length_a 83.926 _cell.length_b 83.926 _cell.length_c 161.438 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 167 A TYR 1034 1_555 A N PTR 168 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 168 A PTR 1035 1_555 A N THR 169 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 141 A ASN 1008 1_555 D MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 A OD2 ASP 154 A ASP 1021 1_555 D MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 A OD1 ASP 154 A ASP 1021 1_555 E MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A OD2 ASP 154 A ASP 1021 1_555 E MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 C O3B ADP . A ADP 1201 1_555 D MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc6 C O1A ADP . A ADP 1201 1_555 D MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 C O2B ADP . A ADP 1201 1_555 E MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc8 C O3B ADP . A ADP 1201 1_555 E MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc9 D MG MG . A MG 1202 1_555 J O HOH . A HOH 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc10 D MG MG . A MG 1202 1_555 J O HOH . A HOH 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 E MG MG . A MG 1203 1_555 J O HOH . A HOH 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 6C7Y _atom_sites.fract_transf_matrix[1][1] 0.011915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 1201 300 ADP ADP . D 4 MG A 1 1202 301 MG MG . E 4 MG A 1 1203 302 MG MG . F 5 EDO A 1 1204 5 EDO EDO . G 5 EDO A 1 1205 7 EDO EDO . H 5 EDO B 1 201 1 EDO EDO . I 6 ACT B 1 202 4 ACT ACT . J 7 HOH A 1 1301 35 HOH HOH . J 7 HOH A 2 1302 29 HOH HOH . J 7 HOH A 3 1303 3 HOH HOH . J 7 HOH A 4 1304 5 HOH HOH . J 7 HOH A 5 1305 43 HOH HOH . J 7 HOH A 6 1306 9 HOH HOH . J 7 HOH A 7 1307 31 HOH HOH . J 7 HOH A 8 1308 2 HOH HOH . J 7 HOH A 9 1309 4 HOH HOH . J 7 HOH A 10 1310 25 HOH HOH . J 7 HOH A 11 1311 33 HOH HOH . J 7 HOH A 12 1312 38 HOH HOH . J 7 HOH A 13 1313 8 HOH HOH . J 7 HOH A 14 1314 44 HOH HOH . J 7 HOH A 15 1315 12 HOH HOH . J 7 HOH A 16 1316 20 HOH HOH . J 7 HOH A 17 1317 30 HOH HOH . J 7 HOH A 18 1318 39 HOH HOH . J 7 HOH A 19 1319 17 HOH HOH . J 7 HOH A 20 1320 32 HOH HOH . J 7 HOH A 21 1321 45 HOH HOH . J 7 HOH A 22 1322 18 HOH HOH . J 7 HOH A 23 1323 13 HOH HOH . J 7 HOH A 24 1324 41 HOH HOH . J 7 HOH A 25 1325 28 HOH HOH . J 7 HOH A 26 1326 42 HOH HOH . J 7 HOH A 27 1327 40 HOH HOH . K 7 HOH B 1 301 1 HOH HOH . K 7 HOH B 2 302 11 HOH HOH . K 7 HOH B 3 303 23 HOH HOH . K 7 HOH B 4 304 37 HOH HOH . K 7 HOH B 5 305 26 HOH HOH . K 7 HOH B 6 306 16 HOH HOH . K 7 HOH B 7 307 7 HOH HOH . K 7 HOH B 8 308 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 -4.192 55.567 1.051 1 75.18 ? C1 EDO 201 B 1 HETATM 2 O O1 EDO . . . H 5 -5.058 56.692 1.238 1 76.04 ? O1 EDO 201 B 1 HETATM 3 C C2 EDO . . . H 5 -4.285 55.081 -0.39 1 76.04 ? C2 EDO 201 B 1 HETATM 4 O O2 EDO . . . H 5 -3.47 53.913 -0.55 1 74.86 ? O2 EDO 201 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #