data_6C85 # _model_server_result.job_id Vtsni_ULYOXzlH9dyeTeIw _model_server_result.datetime_utc '2024-12-07 05:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6C85 # _exptl.entry_id 6C85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.095 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-benzoquinone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C85 _cell.length_a 107.351 _cell.length_b 107.351 _cell.length_c 223.096 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H4 O2' _chem_comp.formula_weight 108.095 _chem_comp.id PLQ _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-benzoquinone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'cyclohexa-2,5-diene-1,4-dione;QUINONE RING OF THE PLASTOQUINONE 9' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 PLQ doub 260 n n C5 C6 PLQ sing 261 n n C5 C4 PLQ sing 262 n n C6 C1 PLQ doub 263 n n C6 H6 PLQ sing 264 n n C4 C3 PLQ doub 265 n n C4 H4 PLQ sing 266 n n C3 C2 PLQ sing 267 n n C3 H3 PLQ sing 268 n n C2 O2 PLQ doub 269 n n C2 C1 PLQ sing 270 n n C1 H1 PLQ sing 271 n n # _atom_sites.entry_id 6C85 _atom_sites.fract_transf_matrix[1][1] 0.009315 _atom_sites.fract_transf_matrix[1][2] 0.005378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLQ A 1 401 2 PLQ PLQ . D 2 PLQ B 1 401 1 PLQ PLQ . E 3 HOH A 1 501 113 HOH HOH . E 3 HOH A 2 502 76 HOH HOH . E 3 HOH A 3 503 70 HOH HOH . E 3 HOH A 4 504 101 HOH HOH . E 3 HOH A 5 505 62 HOH HOH . E 3 HOH A 6 506 83 HOH HOH . E 3 HOH A 7 507 26 HOH HOH . E 3 HOH A 8 508 53 HOH HOH . E 3 HOH A 9 509 10 HOH HOH . E 3 HOH A 10 510 45 HOH HOH . E 3 HOH A 11 511 12 HOH HOH . E 3 HOH A 12 512 50 HOH HOH . E 3 HOH A 13 513 104 HOH HOH . E 3 HOH A 14 514 4 HOH HOH . E 3 HOH A 15 515 98 HOH HOH . E 3 HOH A 16 516 103 HOH HOH . E 3 HOH A 17 517 47 HOH HOH . E 3 HOH A 18 518 69 HOH HOH . E 3 HOH A 19 519 19 HOH HOH . E 3 HOH A 20 520 111 HOH HOH . E 3 HOH A 21 521 91 HOH HOH . E 3 HOH A 22 522 48 HOH HOH . E 3 HOH A 23 523 67 HOH HOH . E 3 HOH A 24 524 25 HOH HOH . E 3 HOH A 25 525 99 HOH HOH . E 3 HOH A 26 526 108 HOH HOH . E 3 HOH A 27 527 29 HOH HOH . E 3 HOH A 28 528 40 HOH HOH . E 3 HOH A 29 529 90 HOH HOH . E 3 HOH A 30 530 95 HOH HOH . E 3 HOH A 31 531 65 HOH HOH . E 3 HOH A 32 532 66 HOH HOH . E 3 HOH A 33 533 74 HOH HOH . E 3 HOH A 34 534 9 HOH HOH . E 3 HOH A 35 535 96 HOH HOH . E 3 HOH A 36 536 57 HOH HOH . E 3 HOH A 37 537 79 HOH HOH . E 3 HOH A 38 538 64 HOH HOH . E 3 HOH A 39 539 36 HOH HOH . E 3 HOH A 40 540 30 HOH HOH . E 3 HOH A 41 541 1 HOH HOH . E 3 HOH A 42 542 116 HOH HOH . E 3 HOH A 43 543 77 HOH HOH . E 3 HOH A 44 544 106 HOH HOH . E 3 HOH A 45 545 114 HOH HOH . E 3 HOH A 46 546 105 HOH HOH . F 3 HOH B 1 501 8 HOH HOH . F 3 HOH B 2 502 11 HOH HOH . F 3 HOH B 3 503 34 HOH HOH . F 3 HOH B 4 504 37 HOH HOH . F 3 HOH B 5 505 44 HOH HOH . F 3 HOH B 6 506 2 HOH HOH . F 3 HOH B 7 507 28 HOH HOH . F 3 HOH B 8 508 14 HOH HOH . F 3 HOH B 9 509 87 HOH HOH . F 3 HOH B 10 510 46 HOH HOH . F 3 HOH B 11 511 75 HOH HOH . F 3 HOH B 12 512 63 HOH HOH . F 3 HOH B 13 513 27 HOH HOH . F 3 HOH B 14 514 21 HOH HOH . F 3 HOH B 15 515 6 HOH HOH . F 3 HOH B 16 516 39 HOH HOH . F 3 HOH B 17 517 22 HOH HOH . F 3 HOH B 18 518 18 HOH HOH . F 3 HOH B 19 519 72 HOH HOH . F 3 HOH B 20 520 43 HOH HOH . F 3 HOH B 21 521 81 HOH HOH . F 3 HOH B 22 522 102 HOH HOH . F 3 HOH B 23 523 13 HOH HOH . F 3 HOH B 24 524 49 HOH HOH . F 3 HOH B 25 525 110 HOH HOH . F 3 HOH B 26 526 41 HOH HOH . F 3 HOH B 27 527 51 HOH HOH . F 3 HOH B 28 528 15 HOH HOH . F 3 HOH B 29 529 32 HOH HOH . F 3 HOH B 30 530 80 HOH HOH . F 3 HOH B 31 531 59 HOH HOH . F 3 HOH B 32 532 73 HOH HOH . F 3 HOH B 33 533 86 HOH HOH . F 3 HOH B 34 534 17 HOH HOH . F 3 HOH B 35 535 68 HOH HOH . F 3 HOH B 36 536 3 HOH HOH . F 3 HOH B 37 537 58 HOH HOH . F 3 HOH B 38 538 60 HOH HOH . F 3 HOH B 39 539 85 HOH HOH . F 3 HOH B 40 540 42 HOH HOH . F 3 HOH B 41 541 112 HOH HOH . F 3 HOH B 42 542 78 HOH HOH . F 3 HOH B 43 543 56 HOH HOH . F 3 HOH B 44 544 107 HOH HOH . F 3 HOH B 45 545 89 HOH HOH . F 3 HOH B 46 546 97 HOH HOH . F 3 HOH B 47 547 52 HOH HOH . F 3 HOH B 48 548 38 HOH HOH . F 3 HOH B 49 549 88 HOH HOH . F 3 HOH B 50 550 115 HOH HOH . F 3 HOH B 51 551 84 HOH HOH . F 3 HOH B 52 552 54 HOH HOH . F 3 HOH B 53 553 55 HOH HOH . F 3 HOH B 54 554 93 HOH HOH . F 3 HOH B 55 555 71 HOH HOH . F 3 HOH B 56 556 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 PLQ . . . C 2 45.38 49.379 465.291 1 54.06 ? O5 PLQ 401 A 1 HETATM 2 C C5 PLQ . . . C 2 45.03 49.905 464.291 1 75.95 ? C5 PLQ 401 A 1 HETATM 3 C C6 PLQ . . . C 2 44.786 51.414 464.269 1 73.77 ? C6 PLQ 401 A 1 HETATM 4 C C4 PLQ . . . C 2 44.805 49.092 463.027 1 67.07 ? C4 PLQ 401 A 1 HETATM 5 C C3 PLQ . . . C 2 44.347 49.806 461.759 1 83.13 ? C3 PLQ 401 A 1 HETATM 6 C C2 PLQ . . . C 2 44.097 51.32 461.726 1 90.25 ? C2 PLQ 401 A 1 HETATM 7 O O2 PLQ . . . C 2 43.745 51.83 460.685 1 71.84 ? O2 PLQ 401 A 1 HETATM 8 C C1 PLQ . . . C 2 44.311 52.137 463.016 1 41.13 ? C1 PLQ 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 93 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #