data_6C88 # _model_server_result.job_id h3b7XUslOwx2Z7UlPJu7uQ _model_server_result.datetime_utc '2025-01-01 14:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6C88 # _exptl.entry_id 6C88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C88 _cell.length_a 11.529 _cell.length_b 20.36 _cell.length_c 36.729 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -11.529 0 0 3 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 11.529 0 0 4 'crystal symmetry operation' 1_355 x-2,y,z 1 0 0 0 1 0 0 0 1 -23.058 0 0 5 'crystal symmetry operation' 1_755 x+2,y,z 1 0 0 0 1 0 0 0 1 23.058 0 0 6 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 5.7645 -10.18 0 7 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -5.7645 -10.18 0 8 'crystal symmetry operation' 4_645 x+3/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 17.2935 -10.18 0 9 'crystal symmetry operation' 4_345 x-3/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -17.2935 -10.18 0 10 'crystal symmetry operation' 4_745 x+5/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 28.8225 -10.18 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 13 n n C1 C2 GOL sing 14 n n C1 H11 GOL sing 15 n n C1 H12 GOL sing 16 n n O1 HO1 GOL sing 17 n n C2 O2 GOL sing 18 n n C2 C3 GOL sing 19 n n C2 H2 GOL sing 20 n n O2 HO2 GOL sing 21 n n C3 O3 GOL sing 22 n n C3 H31 GOL sing 23 n n C3 H32 GOL sing 24 n n O3 HO3 GOL sing 25 n n # _atom_sites.entry_id 6C88 _atom_sites.fract_transf_matrix[1][1] 0.086738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.049116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 101 1 GOL GOL . D 3 HOH A 1 101 1 HOH HOH . E 3 HOH B 1 201 5 HOH HOH . E 3 HOH B 2 202 4 HOH HOH . E 3 HOH B 3 203 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -12.937 1.145 10.7 1 7.85 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . C 2 -13.617 0.28 11.567 1 10.08 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . C 2 -13.86 2.32 10.505 1 19.69 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . C 2 -13.101 3.493 10.67 1 23.47 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . C 2 -14.468 2.223 9.111 1 9.9 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . C 2 -13.639 2.863 8.162 1 21.85 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #