data_6C8V # _model_server_result.job_id 1t-I68su56aYZ2OR97KsCA _model_server_result.datetime_utc '2024-12-26 17:14:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6C8V # _exptl.entry_id 6C8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C8V _cell.length_a 97.57 _cell.length_b 97.57 _cell.length_c 86.417 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 258 A CYS 248 1_555 B FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 A SG CYS 278 A CYS 268 1_555 B FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc3 A SG CYS 320 A CYS 310 1_555 C FE2 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A SG CYS 323 A CYS 313 1_555 C FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A OD1 ASP 329 A ASP 319 1_555 C FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc6 A OD2 ASP 329 A ASP 319 1_555 C FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc7 A SG CYS 351 A CYS 341 1_555 C FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 294 n n FE1 S3 SF4 sing 295 n n FE1 S4 SF4 sing 296 n n FE2 S1 SF4 sing 297 n n FE2 S3 SF4 sing 298 n n FE2 S4 SF4 sing 299 n n FE3 S1 SF4 sing 300 n n FE3 S2 SF4 sing 301 n n FE3 S4 SF4 sing 302 n n FE4 S1 SF4 sing 303 n n FE4 S2 SF4 sing 304 n n FE4 S3 SF4 sing 305 n n # _atom_sites.entry_id 6C8V _atom_sites.fract_transf_matrix[1][1] 0.010249 _atom_sites.fract_transf_matrix[1][2] 0.005917 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 501 501 FES FES . C 3 SF4 A 1 502 502 SF4 SF4 . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 3 42.313 17.284 5.808 1 35.62 ? FE1 SF4 502 A 1 HETATM 2 FE FE2 SF4 . . . C 3 42.308 14.335 4.977 1 36.81 ? FE2 SF4 502 A 1 HETATM 3 FE FE3 SF4 . . . C 3 43.308 16.474 3.03 1 36.4 ? FE3 SF4 502 A 1 HETATM 4 FE FE4 SF4 . . . C 3 40.306 16.324 3.704 1 36.7 ? FE4 SF4 502 A 1 HETATM 5 S S1 SF4 . . . C 3 41.783 14.913 2.934 1 35.14 ? S1 SF4 502 A 1 HETATM 6 S S2 SF4 . . . C 3 41.823 17.895 3.773 1 35.27 ? S2 SF4 502 A 1 HETATM 7 S S3 SF4 . . . C 3 40.795 15.716 5.744 1 35.22 ? S3 SF4 502 A 1 HETATM 8 S S4 SF4 . . . C 3 43.832 15.9 5.072 1 34.96 ? S4 SF4 502 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #