data_6C8W
#
_model_server_result.job_id            uOFyjbAXNdXqQp7L6SkpaQ 
_model_server_result.datetime_utc      '2024-11-02 19:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    6C8W 
#
_exptl.entry_id    6C8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6C8W 
_cell.length_a            107.46 
_cell.length_b            107.46 
_cell.length_c            223.07 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6C8W 
_atom_sites.fract_transf_matrix[1][1]    0.009306 
_atom_sites.fract_transf_matrix[1][2]    0.005373 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 401 1 NAP NAP . 
D 2 NAP B 1 401 2 NAP NAP . 
E 3 HOH A 1 501 73 HOH HOH . 
E 3 HOH A 2 502 64 HOH HOH . 
E 3 HOH A 3 503 91 HOH HOH . 
E 3 HOH A 4 504 58 HOH HOH . 
E 3 HOH A 5 505 61 HOH HOH . 
E 3 HOH A 6 506 9 HOH HOH . 
E 3 HOH A 7 507 45 HOH HOH . 
E 3 HOH A 8 508 76 HOH HOH . 
E 3 HOH A 9 509 15 HOH HOH . 
E 3 HOH A 10 510 46 HOH HOH . 
E 3 HOH A 11 511 71 HOH HOH . 
E 3 HOH A 12 512 25 HOH HOH . 
E 3 HOH A 13 513 13 HOH HOH . 
E 3 HOH A 14 514 18 HOH HOH . 
E 3 HOH A 15 515 6 HOH HOH . 
E 3 HOH A 16 516 38 HOH HOH . 
E 3 HOH A 17 517 32 HOH HOH . 
E 3 HOH A 18 518 26 HOH HOH . 
E 3 HOH A 19 519 19 HOH HOH . 
E 3 HOH A 20 520 65 HOH HOH . 
E 3 HOH A 21 521 74 HOH HOH . 
E 3 HOH A 22 522 40 HOH HOH . 
E 3 HOH A 23 523 54 HOH HOH . 
E 3 HOH A 24 524 21 HOH HOH . 
E 3 HOH A 25 525 93 HOH HOH . 
E 3 HOH A 26 526 14 HOH HOH . 
E 3 HOH A 27 527 68 HOH HOH . 
E 3 HOH A 28 528 60 HOH HOH . 
E 3 HOH A 29 529 8 HOH HOH . 
E 3 HOH A 30 530 7 HOH HOH . 
E 3 HOH A 31 531 43 HOH HOH . 
E 3 HOH A 32 532 24 HOH HOH . 
E 3 HOH A 33 533 80 HOH HOH . 
E 3 HOH A 34 534 49 HOH HOH . 
E 3 HOH A 35 535 23 HOH HOH . 
E 3 HOH A 36 536 95 HOH HOH . 
E 3 HOH A 37 537 56 HOH HOH . 
E 3 HOH A 38 538 17 HOH HOH . 
E 3 HOH A 39 539 81 HOH HOH . 
E 3 HOH A 40 540 92 HOH HOH . 
E 3 HOH A 41 541 16 HOH HOH . 
E 3 HOH A 42 542 52 HOH HOH . 
E 3 HOH A 43 543 96 HOH HOH . 
E 3 HOH A 44 544 70 HOH HOH . 
E 3 HOH A 45 545 79 HOH HOH . 
F 3 HOH B 1 501 57 HOH HOH . 
F 3 HOH B 2 502 2 HOH HOH . 
F 3 HOH B 3 503 47 HOH HOH . 
F 3 HOH B 4 504 87 HOH HOH . 
F 3 HOH B 5 505 29 HOH HOH . 
F 3 HOH B 6 506 33 HOH HOH . 
F 3 HOH B 7 507 37 HOH HOH . 
F 3 HOH B 8 508 55 HOH HOH . 
F 3 HOH B 9 509 1 HOH HOH . 
F 3 HOH B 10 510 53 HOH HOH . 
F 3 HOH B 11 511 10 HOH HOH . 
F 3 HOH B 12 512 42 HOH HOH . 
F 3 HOH B 13 513 31 HOH HOH . 
F 3 HOH B 14 514 44 HOH HOH . 
F 3 HOH B 15 515 3 HOH HOH . 
F 3 HOH B 16 516 89 HOH HOH . 
F 3 HOH B 17 517 41 HOH HOH . 
F 3 HOH B 18 518 77 HOH HOH . 
F 3 HOH B 19 519 20 HOH HOH . 
F 3 HOH B 20 520 48 HOH HOH . 
F 3 HOH B 21 521 69 HOH HOH . 
F 3 HOH B 22 522 36 HOH HOH . 
F 3 HOH B 23 523 86 HOH HOH . 
F 3 HOH B 24 524 34 HOH HOH . 
F 3 HOH B 25 525 62 HOH HOH . 
F 3 HOH B 26 526 4 HOH HOH . 
F 3 HOH B 27 527 59 HOH HOH . 
F 3 HOH B 28 528 90 HOH HOH . 
F 3 HOH B 29 529 50 HOH HOH . 
F 3 HOH B 30 530 11 HOH HOH . 
F 3 HOH B 31 531 83 HOH HOH . 
F 3 HOH B 32 532 51 HOH HOH . 
F 3 HOH B 33 533 72 HOH HOH . 
F 3 HOH B 34 534 28 HOH HOH . 
F 3 HOH B 35 535 67 HOH HOH . 
F 3 HOH B 36 536 66 HOH HOH . 
F 3 HOH B 37 537 12 HOH HOH . 
F 3 HOH B 38 538 35 HOH HOH . 
F 3 HOH B 39 539 22 HOH HOH . 
F 3 HOH B 40 540 27 HOH HOH . 
F 3 HOH B 41 541 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 2 -47.099 -42.344 2.011 1 75.58 ? PA NAP 401 B 1 
HETATM 2 O O1A NAP . . . D 2 -46.1 -43.233 1.302 1 72.77 ? O1A NAP 401 B 1 
HETATM 3 O O2A NAP . . . D 2 -46.783 -40.881 1.759 1 81.49 ? O2A NAP 401 B 1 
HETATM 4 O O5B NAP . . . D 2 -48.588 -42.69 1.402 1 82.97 ? O5B NAP 401 B 1 
HETATM 5 C C5B NAP . . . D 2 -49.661 -41.784 1.456 1 86.31 ? C5B NAP 401 B 1 
HETATM 6 C C4B NAP . . . D 2 -50.871 -42.698 1.102 1 87.57 ? C4B NAP 401 B 1 
HETATM 7 O O4B NAP . . . D 2 -52.038 -42.188 1.43 1 83.91 ? O4B NAP 401 B 1 
HETATM 8 C C3B NAP . . . D 2 -50.847 -42.869 -0.432 1 85.78 ? C3B NAP 401 B 1 
HETATM 9 O O3B NAP . . . D 2 -51.118 -44.154 -0.826 1 79.34 ? O3B NAP 401 B 1 
HETATM 10 C C2B NAP . . . D 2 -51.932 -41.872 -0.88 1 87.04 ? C2B NAP 401 B 1 
HETATM 11 O O2B NAP . . . D 2 -52.431 -42.321 -2.208 1 88.07 ? O2B NAP 401 B 1 
HETATM 12 C C1B NAP . . . D 2 -52.853 -41.972 0.046 1 85.67 ? C1B NAP 401 B 1 
HETATM 13 N N9A NAP . . . D 2 -53.572 -40.746 0.242 1 84.54 ? N9A NAP 401 B 1 
HETATM 14 C C8A NAP . . . D 2 -53.101 -39.512 0.457 1 85.01 ? C8A NAP 401 B 1 
HETATM 15 N N7A NAP . . . D 2 -54.152 -38.696 0.61 1 86.98 ? N7A NAP 401 B 1 
HETATM 16 C C5A NAP . . . D 2 -55.271 -39.431 0.498 1 79.05 ? C5A NAP 401 B 1 
HETATM 17 C C6A NAP . . . D 2 -56.597 -39.08 0.584 1 70.7 ? C6A NAP 401 B 1 
HETATM 18 N N6A NAP . . . D 2 -57.306 -37.84 0.826 1 67.65 ? N6A NAP 401 B 1 
HETATM 19 N N1A NAP . . . D 2 -57.547 -39.998 0.439 1 77.22 ? N1A NAP 401 B 1 
HETATM 20 C C2A NAP . . . D 2 -57.193 -41.292 0.214 1 78.26 ? C2A NAP 401 B 1 
HETATM 21 N N3A NAP . . . D 2 -55.878 -41.644 0.134 1 78.63 ? N3A NAP 401 B 1 
HETATM 22 C C4A NAP . . . D 2 -54.92 -40.707 0.277 1 80.76 ? C4A NAP 401 B 1 
HETATM 23 O O3 NAP . . . D 2 -47.082 -42.666 3.64 1 86.08 ? O3 NAP 401 B 1 
HETATM 24 P PN NAP . . . D 2 -46.812 -44.136 4.362 1 75.66 ? PN NAP 401 B 1 
HETATM 25 O O1N NAP . . . D 2 -45.329 -44.334 4.587 1 77.2 ? O1N NAP 401 B 1 
HETATM 26 O O2N NAP . . . D 2 -47.428 -45.217 3.49 1 83.54 ? O2N NAP 401 B 1 
HETATM 27 O O5D NAP . . . D 2 -47.526 -44.15 5.836 1 92 ? O5D NAP 401 B 1 
HETATM 28 C C5D NAP . . . D 2 -46.772 -44.444 6.996 1 106.18 ? C5D NAP 401 B 1 
HETATM 29 C C4D NAP . . . D 2 -47.834 -44.939 8.008 1 96.23 ? C4D NAP 401 B 1 
HETATM 30 O O4D NAP . . . D 2 -47.58 -44.553 9.222 1 92.78 ? O4D NAP 401 B 1 
HETATM 31 C C3D NAP . . . D 2 -49.079 -44.153 7.553 1 89.95 ? C3D NAP 401 B 1 
HETATM 32 O O3D NAP . . . D 2 -50.215 -44.832 7.828 1 88.39 ? O3D NAP 401 B 1 
HETATM 33 C C2D NAP . . . D 2 -48.959 -42.815 8.308 1 94.24 ? C2D NAP 401 B 1 
HETATM 34 O O2D NAP . . . D 2 -50.328 -42.226 8.485 1 85.39 ? O2D NAP 401 B 1 
HETATM 35 C C1D NAP . . . D 2 -48.424 -43.171 9.453 1 102.99 ? C1D NAP 401 B 1 
HETATM 36 N N1N NAP . . . D 2 -47.538 -42.18 10.03 1 113.49 ? N1N NAP 401 B 1 
HETATM 37 C C2N NAP . . . D 2 -46.495 -42.673 10.72 1 120.69 ? C2N NAP 401 B 1 
HETATM 38 C C3N NAP . . . D 2 -45.582 -41.835 11.316 1 114.74 ? C3N NAP 401 B 1 
HETATM 39 C C7N NAP . . . D 2 -44.45 -42.545 12.05 1 95.44 ? C7N NAP 401 B 1 
HETATM 40 O O7N NAP . . . D 2 -44.759 -43.437 12.778 1 81.49 ? O7N NAP 401 B 1 
HETATM 41 N N7N NAP . . . D 2 -43.056 -42.174 11.808 1 85.12 ? N7N NAP 401 B 1 
HETATM 42 C C4N NAP . . . D 2 -45.732 -40.484 11.23 1 119.8 ? C4N NAP 401 B 1 
HETATM 43 C C5N NAP . . . D 2 -46.796 -39.976 10.546 1 119.18 ? C5N NAP 401 B 1 
HETATM 44 C C6N NAP . . . D 2 -47.713 -40.834 9.936 1 117.64 ? C6N NAP 401 B 1 
HETATM 45 P P2B NAP . . . D 2 -51.855 -41.605 -3.582 1 88.62 ? P2B NAP 401 B 1 
HETATM 46 O O1X NAP . . . D 2 -51.335 -40.199 -3.31 1 75.17 ? O1X NAP 401 B 1 
HETATM 47 O O2X NAP . . . D 2 -50.743 -42.418 -4.227 1 80.48 ? O2X NAP 401 B 1 
HETATM 48 O O3X NAP . . . D 2 -53.076 -41.581 -4.483 1 89.16 ? O3X NAP 401 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#