data_6C90 # _model_server_result.job_id '_gvE-tca84jODUtL4cSxqA' _model_server_result.datetime_utc '2024-11-13 06:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 6C90 # _exptl.entry_id 6C90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C90 _cell.length_a 147.635 _cell.length_b 147.635 _cell.length_c 101.589 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 506 A LEU 573 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A O LEU 507 A LEU 574 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 A O VAL 509 A VAL 576 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A O ILE 512 A ILE 579 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 E MG MG . A MG 1103 1_555 K O HOH . A HOH 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 E MG MG . A MG 1103 1_555 K O HOH . A HOH 1399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 281 n n C1 C3 MLI sing 282 n n C1 H11 MLI sing 283 n n C1 H12 MLI sing 284 n n C2 O6 MLI doub 285 n n C2 O7 MLI sing 286 n n C3 O8 MLI doub 287 n n C3 O9 MLI sing 288 n n # _atom_sites.entry_id 6C90 _atom_sites.fract_transf_matrix[1][1] 0.006773 _atom_sites.fract_transf_matrix[1][2] 0.003911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 1101 1 ADP ADP . D 4 MG A 1 1102 1 MG MG . E 4 MG A 1 1103 2 MG MG . F 5 MLI A 1 1104 1 MLI MLI . G 5 MLI A 1 1105 2 MLI MLI . H 5 MLI A 1 1106 3 MLI MLI . I 5 MLI A 1 1107 4 MLI MLI . J 6 TLA A 1 1108 1 TLA TLA . K 7 HOH A 1 1201 276 HOH HOH . K 7 HOH A 2 1202 225 HOH HOH . K 7 HOH A 3 1203 272 HOH HOH . K 7 HOH A 4 1204 252 HOH HOH . K 7 HOH A 5 1205 248 HOH HOH . K 7 HOH A 6 1206 195 HOH HOH . K 7 HOH A 7 1207 261 HOH HOH . K 7 HOH A 8 1208 80 HOH HOH . K 7 HOH A 9 1209 2 HOH HOH . K 7 HOH A 10 1210 198 HOH HOH . K 7 HOH A 11 1211 82 HOH HOH . K 7 HOH A 12 1212 108 HOH HOH . K 7 HOH A 13 1213 45 HOH HOH . K 7 HOH A 14 1214 255 HOH HOH . K 7 HOH A 15 1215 30 HOH HOH . K 7 HOH A 16 1216 20 HOH HOH . K 7 HOH A 17 1217 269 HOH HOH . K 7 HOH A 18 1218 190 HOH HOH . K 7 HOH A 19 1219 166 HOH HOH . K 7 HOH A 20 1220 256 HOH HOH . K 7 HOH A 21 1221 245 HOH HOH . K 7 HOH A 22 1222 57 HOH HOH . K 7 HOH A 23 1223 93 HOH HOH . K 7 HOH A 24 1224 161 HOH HOH . K 7 HOH A 25 1225 91 HOH HOH . K 7 HOH A 26 1226 220 HOH HOH . K 7 HOH A 27 1227 7 HOH HOH . K 7 HOH A 28 1228 209 HOH HOH . K 7 HOH A 29 1229 19 HOH HOH . K 7 HOH A 30 1230 36 HOH HOH . K 7 HOH A 31 1231 222 HOH HOH . K 7 HOH A 32 1232 118 HOH HOH . K 7 HOH A 33 1233 154 HOH HOH . K 7 HOH A 34 1234 11 HOH HOH . K 7 HOH A 35 1235 113 HOH HOH . K 7 HOH A 36 1236 65 HOH HOH . K 7 HOH A 37 1237 122 HOH HOH . K 7 HOH A 38 1238 210 HOH HOH . K 7 HOH A 39 1239 83 HOH HOH . K 7 HOH A 40 1240 201 HOH HOH . K 7 HOH A 41 1241 169 HOH HOH . K 7 HOH A 42 1242 71 HOH HOH . K 7 HOH A 43 1243 136 HOH HOH . K 7 HOH A 44 1244 287 HOH HOH . K 7 HOH A 45 1245 141 HOH HOH . K 7 HOH A 46 1246 22 HOH HOH . K 7 HOH A 47 1247 159 HOH HOH . K 7 HOH A 48 1248 48 HOH HOH . K 7 HOH A 49 1249 38 HOH HOH . K 7 HOH A 50 1250 40 HOH HOH . K 7 HOH A 51 1251 28 HOH HOH . K 7 HOH A 52 1252 128 HOH HOH . K 7 HOH A 53 1253 66 HOH HOH . K 7 HOH A 54 1254 105 HOH HOH . K 7 HOH A 55 1255 281 HOH HOH . K 7 HOH A 56 1256 9 HOH HOH . K 7 HOH A 57 1257 237 HOH HOH . K 7 HOH A 58 1258 64 HOH HOH . K 7 HOH A 59 1259 3 HOH HOH . K 7 HOH A 60 1260 23 HOH HOH . K 7 HOH A 61 1261 61 HOH HOH . K 7 HOH A 62 1262 21 HOH HOH . K 7 HOH A 63 1263 6 HOH HOH . K 7 HOH A 64 1264 189 HOH HOH . K 7 HOH A 65 1265 217 HOH HOH . K 7 HOH A 66 1266 16 HOH HOH . K 7 HOH A 67 1267 17 HOH HOH . K 7 HOH A 68 1268 137 HOH HOH . K 7 HOH A 69 1269 151 HOH HOH . K 7 HOH A 70 1270 274 HOH HOH . K 7 HOH A 71 1271 285 HOH HOH . K 7 HOH A 72 1272 4 HOH HOH . K 7 HOH A 73 1273 68 HOH HOH . K 7 HOH A 74 1274 10 HOH HOH . K 7 HOH A 75 1275 25 HOH HOH . K 7 HOH A 76 1276 99 HOH HOH . K 7 HOH A 77 1277 8 HOH HOH . K 7 HOH A 78 1278 109 HOH HOH . K 7 HOH A 79 1279 44 HOH HOH . K 7 HOH A 80 1280 170 HOH HOH . K 7 HOH A 81 1281 86 HOH HOH . K 7 HOH A 82 1282 140 HOH HOH . K 7 HOH A 83 1283 31 HOH HOH . K 7 HOH A 84 1284 79 HOH HOH . K 7 HOH A 85 1285 32 HOH HOH . K 7 HOH A 86 1286 212 HOH HOH . K 7 HOH A 87 1287 243 HOH HOH . K 7 HOH A 88 1288 120 HOH HOH . K 7 HOH A 89 1289 253 HOH HOH . K 7 HOH A 90 1290 215 HOH HOH . K 7 HOH A 91 1291 29 HOH HOH . K 7 HOH A 92 1292 62 HOH HOH . K 7 HOH A 93 1293 67 HOH HOH . K 7 HOH A 94 1294 73 HOH HOH . K 7 HOH A 95 1295 102 HOH HOH . K 7 HOH A 96 1296 49 HOH HOH . K 7 HOH A 97 1297 33 HOH HOH . K 7 HOH A 98 1298 42 HOH HOH . K 7 HOH A 99 1299 291 HOH HOH . K 7 HOH A 100 1300 277 HOH HOH . K 7 HOH A 101 1301 41 HOH HOH . K 7 HOH A 102 1302 5 HOH HOH . K 7 HOH A 103 1303 186 HOH HOH . K 7 HOH A 104 1304 289 HOH HOH . K 7 HOH A 105 1305 76 HOH HOH . K 7 HOH A 106 1306 98 HOH HOH . K 7 HOH A 107 1307 92 HOH HOH . K 7 HOH A 108 1308 117 HOH HOH . K 7 HOH A 109 1309 247 HOH HOH . K 7 HOH A 110 1310 152 HOH HOH . K 7 HOH A 111 1311 192 HOH HOH . K 7 HOH A 112 1312 96 HOH HOH . K 7 HOH A 113 1313 59 HOH HOH . K 7 HOH A 114 1314 27 HOH HOH . K 7 HOH A 115 1315 130 HOH HOH . K 7 HOH A 116 1316 135 HOH HOH . K 7 HOH A 117 1317 116 HOH HOH . K 7 HOH A 118 1318 181 HOH HOH . K 7 HOH A 119 1319 95 HOH HOH . K 7 HOH A 120 1320 89 HOH HOH . K 7 HOH A 121 1321 226 HOH HOH . K 7 HOH A 122 1322 37 HOH HOH . K 7 HOH A 123 1323 204 HOH HOH . K 7 HOH A 124 1324 12 HOH HOH . K 7 HOH A 125 1325 224 HOH HOH . K 7 HOH A 126 1326 132 HOH HOH . K 7 HOH A 127 1327 254 HOH HOH . K 7 HOH A 128 1328 115 HOH HOH . K 7 HOH A 129 1329 51 HOH HOH . K 7 HOH A 130 1330 238 HOH HOH . K 7 HOH A 131 1331 46 HOH HOH . K 7 HOH A 132 1332 74 HOH HOH . K 7 HOH A 133 1333 43 HOH HOH . K 7 HOH A 134 1334 251 HOH HOH . K 7 HOH A 135 1335 216 HOH HOH . K 7 HOH A 136 1336 85 HOH HOH . K 7 HOH A 137 1337 112 HOH HOH . K 7 HOH A 138 1338 90 HOH HOH . K 7 HOH A 139 1339 55 HOH HOH . K 7 HOH A 140 1340 78 HOH HOH . K 7 HOH A 141 1341 26 HOH HOH . K 7 HOH A 142 1342 294 HOH HOH . K 7 HOH A 143 1343 139 HOH HOH . K 7 HOH A 144 1344 53 HOH HOH . K 7 HOH A 145 1345 114 HOH HOH . K 7 HOH A 146 1346 75 HOH HOH . K 7 HOH A 147 1347 246 HOH HOH . K 7 HOH A 148 1348 191 HOH HOH . K 7 HOH A 149 1349 126 HOH HOH . K 7 HOH A 150 1350 223 HOH HOH . K 7 HOH A 151 1351 84 HOH HOH . K 7 HOH A 152 1352 63 HOH HOH . K 7 HOH A 153 1353 34 HOH HOH . K 7 HOH A 154 1354 168 HOH HOH . K 7 HOH A 155 1355 123 HOH HOH . K 7 HOH A 156 1356 233 HOH HOH . K 7 HOH A 157 1357 143 HOH HOH . K 7 HOH A 158 1358 188 HOH HOH . K 7 HOH A 159 1359 81 HOH HOH . K 7 HOH A 160 1360 173 HOH HOH . K 7 HOH A 161 1361 164 HOH HOH . K 7 HOH A 162 1362 77 HOH HOH . K 7 HOH A 163 1363 177 HOH HOH . K 7 HOH A 164 1364 156 HOH HOH . K 7 HOH A 165 1365 202 HOH HOH . K 7 HOH A 166 1366 279 HOH HOH . K 7 HOH A 167 1367 47 HOH HOH . K 7 HOH A 168 1368 147 HOH HOH . K 7 HOH A 169 1369 230 HOH HOH . K 7 HOH A 170 1370 14 HOH HOH . K 7 HOH A 171 1371 15 HOH HOH . K 7 HOH A 172 1372 292 HOH HOH . K 7 HOH A 173 1373 174 HOH HOH . K 7 HOH A 174 1374 87 HOH HOH . K 7 HOH A 175 1375 18 HOH HOH . K 7 HOH A 176 1376 172 HOH HOH . K 7 HOH A 177 1377 138 HOH HOH . K 7 HOH A 178 1378 157 HOH HOH . K 7 HOH A 179 1379 149 HOH HOH . K 7 HOH A 180 1380 107 HOH HOH . K 7 HOH A 181 1381 218 HOH HOH . K 7 HOH A 182 1382 175 HOH HOH . K 7 HOH A 183 1383 69 HOH HOH . K 7 HOH A 184 1384 97 HOH HOH . K 7 HOH A 185 1385 39 HOH HOH . K 7 HOH A 186 1386 155 HOH HOH . K 7 HOH A 187 1387 219 HOH HOH . K 7 HOH A 188 1388 228 HOH HOH . K 7 HOH A 189 1389 240 HOH HOH . K 7 HOH A 190 1390 284 HOH HOH . K 7 HOH A 191 1391 165 HOH HOH . K 7 HOH A 192 1392 257 HOH HOH . K 7 HOH A 193 1393 163 HOH HOH . K 7 HOH A 194 1394 50 HOH HOH . K 7 HOH A 195 1395 290 HOH HOH . K 7 HOH A 196 1396 162 HOH HOH . K 7 HOH A 197 1397 180 HOH HOH . K 7 HOH A 198 1398 179 HOH HOH . K 7 HOH A 199 1399 150 HOH HOH . K 7 HOH A 200 1400 94 HOH HOH . K 7 HOH A 201 1401 278 HOH HOH . K 7 HOH A 202 1402 199 HOH HOH . K 7 HOH A 203 1403 211 HOH HOH . K 7 HOH A 204 1404 234 HOH HOH . K 7 HOH A 205 1405 250 HOH HOH . K 7 HOH A 206 1406 259 HOH HOH . K 7 HOH A 207 1407 167 HOH HOH . K 7 HOH A 208 1408 197 HOH HOH . K 7 HOH A 209 1409 288 HOH HOH . K 7 HOH A 210 1410 203 HOH HOH . K 7 HOH A 211 1411 229 HOH HOH . K 7 HOH A 212 1412 227 HOH HOH . K 7 HOH A 213 1413 293 HOH HOH . K 7 HOH A 214 1414 265 HOH HOH . K 7 HOH A 215 1415 125 HOH HOH . K 7 HOH A 216 1416 249 HOH HOH . K 7 HOH A 217 1417 268 HOH HOH . K 7 HOH A 218 1418 286 HOH HOH . K 7 HOH A 219 1419 205 HOH HOH . K 7 HOH A 220 1420 264 HOH HOH . K 7 HOH A 221 1421 148 HOH HOH . K 7 HOH A 222 1422 258 HOH HOH . K 7 HOH A 223 1423 235 HOH HOH . K 7 HOH A 224 1424 267 HOH HOH . K 7 HOH A 225 1425 270 HOH HOH . K 7 HOH A 226 1426 200 HOH HOH . K 7 HOH A 227 1427 273 HOH HOH . L 7 HOH B 1 801 231 HOH HOH . L 7 HOH B 2 802 13 HOH HOH . L 7 HOH B 3 803 236 HOH HOH . L 7 HOH B 4 804 60 HOH HOH . L 7 HOH B 5 805 101 HOH HOH . L 7 HOH B 6 806 106 HOH HOH . L 7 HOH B 7 807 275 HOH HOH . L 7 HOH B 8 808 142 HOH HOH . L 7 HOH B 9 809 232 HOH HOH . L 7 HOH B 10 810 182 HOH HOH . L 7 HOH B 11 811 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . H 5 76.453 -16.406 -11.251 1 87.9 ? C1 MLI 1106 A 1 HETATM 2 C C2 MLI . . . H 5 77.667 -17.131 -11.833 1 85.55 ? C2 MLI 1106 A 1 HETATM 3 C C3 MLI . . . H 5 75.908 -17.17 -10.044 1 74.14 ? C3 MLI 1106 A 1 HETATM 4 O O6 MLI . . . H 5 78.436 -16.53 -12.632 1 66.6 ? O6 MLI 1106 A 1 HETATM 5 O O7 MLI . . . H 5 77.901 -18.33 -11.521 1 71.59 ? O7 MLI 1106 A 1 HETATM 6 O O8 MLI . . . H 5 74.682 -17.113 -9.759 1 73.85 ? O8 MLI 1106 A 1 HETATM 7 O O9 MLI . . . H 5 76.684 -17.855 -9.327 1 56.62 ? O9 MLI 1106 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #