data_6C93 # _model_server_result.job_id Xb1oBBNNAT8t1asVZyVaXg _model_server_result.datetime_utc '2025-02-27 02:19:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 6C93 # _exptl.entry_id 6C93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C93 _cell.length_a 109.435 _cell.length_b 109.435 _cell.length_c 126.443 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 431 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 448 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.182 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6C93 _atom_sites.fract_transf_matrix[1][1] 0.009138 _atom_sites.fract_transf_matrix[1][2] 0.005276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 OCT A 1 601 601 OCT OCT . D 4 HOH A 1 701 701 HOH HOH . D 4 HOH A 2 702 705 HOH HOH . D 4 HOH A 3 703 704 HOH HOH . D 4 HOH A 4 704 706 HOH HOH . D 4 HOH A 5 705 708 HOH HOH . D 4 HOH A 6 706 703 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 106.905 47.987 139.378 1 54.26 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 108.812 50.4 143.136 1 57.69 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 105.281 53.731 142.597 1 54.54 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 102.755 50.292 140.315 1 48.76 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 107.777 48.423 140.404 1 47.46 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 109.006 47.679 140.795 1 47.38 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 109.506 48.323 141.885 1 60.02 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 108.6 49.462 142.183 1 54.71 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 110.716 47.979 142.662 1 54.07 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 109.458 46.404 140.183 1 52.88 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 108.625 45.224 140.695 1 55.6 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 109.476 43.925 140.875 1 59.51 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 108.824 42.937 141.277 1 48.44 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 110.698 43.992 140.645 1 62.92 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 107.995 51.541 143.321 1 53.67 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 108.346 52.646 144.195 1 58.68 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 107.381 53.624 144.014 1 49.38 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 106.457 53.086 143.018 1 51.15 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 109.556 52.666 145.05 1 52.93 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 107.207 54.924 144.635 1 55.82 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 107.924 55.427 145.641 1 53.09 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 104.326 53.121 141.853 1 49.57 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 102.991 53.685 141.576 1 45.52 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 102.238 52.673 141.018 1 48.28 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 103.129 51.487 140.939 1 46.08 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 102.614 55.067 141.914 1 43.77 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 100.885 52.678 140.503 1 53.26 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 100.197 53.757 140.141 1 35.75 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 103.687 49.369 139.915 1 51.72 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 103.371 48.271 138.96 1 42.44 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 104.556 47.743 138.534 1 46.07 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 105.628 48.44 139.306 1 45.08 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 101.999 47.904 138.558 1 43.71 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 104.801 46.68 137.53 1 41.17 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 105.118 47.264 136.152 1 55.67 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 105.329 46.12 135.099 1 51.08 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 105.244 46.493 133.907 1 60.69 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 105.553 44.979 135.535 1 52.76 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 107.494 49.457 141.244 1 49.16 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 106.831 51.807 142.6 1 53.45 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 104.401 51.757 141.383 1 56.28 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 105.077 49.468 140.152 1 46.63 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 105.964 50.643 141.352 1 51.68 3 FE HEM 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #