data_6C9C # _model_server_result.job_id U7VEL-ePXr2rA2rJKEErmw _model_server_result.datetime_utc '2025-01-25 08:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 6C9C # _exptl.entry_id 6C9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.01 _cell.angle_gamma 90 _cell.entry_id 6C9C _cell.length_a 35.66 _cell.length_b 79.34 _cell.length_c 50.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 78 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A NE2 HIS 238 A HIS 237 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A OD2 ASP 242 A ASP 241 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 B O25 EU1 . A EU1 401 1_555 D ZN ZN . A ZN 403 1_555 ? S ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B O27 EU1 . A EU1 401 1_555 D ZN ZN . A ZN 403 1_555 ? S ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 C O25 F64 . A F64 402 1_555 D ZN ZN . A ZN 403 1_555 ? R ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 C O27 F64 . A F64 402 1_555 D ZN ZN . A ZN 403 1_555 ? R ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6C9C _atom_sites.fract_transf_matrix[1][1] 0.028043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000985 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EU1 A 1 401 401 EU1 453 . C 3 F64 A 1 402 402 F64 453 . D 4 ZN A 1 403 403 ZN ZN . E 5 EDO A 1 404 405 EDO EDO . F 5 EDO A 1 405 406 EDO EDO . G 5 EDO A 1 406 407 EDO EDO . H 5 EDO A 1 407 408 EDO EDO . I 5 EDO A 1 408 409 EDO EDO . J 6 HOH A 1 501 157 HOH HOH . J 6 HOH A 2 502 131 HOH HOH . J 6 HOH A 3 503 72 HOH HOH . J 6 HOH A 4 504 13 HOH HOH . J 6 HOH A 5 505 76 HOH HOH . J 6 HOH A 6 506 105 HOH HOH . J 6 HOH A 7 507 20 HOH HOH . J 6 HOH A 8 508 149 HOH HOH . J 6 HOH A 9 509 70 HOH HOH . J 6 HOH A 10 510 156 HOH HOH . J 6 HOH A 11 511 130 HOH HOH . J 6 HOH A 12 512 122 HOH HOH . J 6 HOH A 13 513 127 HOH HOH . J 6 HOH A 14 514 152 HOH HOH . J 6 HOH A 15 515 171 HOH HOH . J 6 HOH A 16 516 10 HOH HOH . J 6 HOH A 17 517 106 HOH HOH . J 6 HOH A 18 518 132 HOH HOH . J 6 HOH A 19 519 102 HOH HOH . J 6 HOH A 20 520 47 HOH HOH . J 6 HOH A 21 521 60 HOH HOH . J 6 HOH A 22 522 6 HOH HOH . J 6 HOH A 23 523 113 HOH HOH . J 6 HOH A 24 524 51 HOH HOH . J 6 HOH A 25 525 65 HOH HOH . J 6 HOH A 26 526 169 HOH HOH . J 6 HOH A 27 527 49 HOH HOH . J 6 HOH A 28 528 16 HOH HOH . J 6 HOH A 29 529 104 HOH HOH . J 6 HOH A 30 530 129 HOH HOH . J 6 HOH A 31 531 158 HOH HOH . J 6 HOH A 32 532 148 HOH HOH . J 6 HOH A 33 533 2 HOH HOH . J 6 HOH A 34 534 25 HOH HOH . J 6 HOH A 35 535 97 HOH HOH . J 6 HOH A 36 536 63 HOH HOH . J 6 HOH A 37 537 41 HOH HOH . J 6 HOH A 38 538 50 HOH HOH . J 6 HOH A 39 539 66 HOH HOH . J 6 HOH A 40 540 62 HOH HOH . J 6 HOH A 41 541 167 HOH HOH . J 6 HOH A 42 542 12 HOH HOH . J 6 HOH A 43 543 123 HOH HOH . J 6 HOH A 44 544 24 HOH HOH . J 6 HOH A 45 545 68 HOH HOH . J 6 HOH A 46 546 36 HOH HOH . J 6 HOH A 47 547 8 HOH HOH . J 6 HOH A 48 548 21 HOH HOH . J 6 HOH A 49 549 116 HOH HOH . J 6 HOH A 50 550 166 HOH HOH . J 6 HOH A 51 551 64 HOH HOH . J 6 HOH A 52 552 114 HOH HOH . J 6 HOH A 53 553 35 HOH HOH . J 6 HOH A 54 554 4 HOH HOH . J 6 HOH A 55 555 78 HOH HOH . J 6 HOH A 56 556 77 HOH HOH . J 6 HOH A 57 557 48 HOH HOH . J 6 HOH A 58 558 56 HOH HOH . J 6 HOH A 59 559 26 HOH HOH . J 6 HOH A 60 560 119 HOH HOH . J 6 HOH A 61 561 83 HOH HOH . J 6 HOH A 62 562 42 HOH HOH . J 6 HOH A 63 563 82 HOH HOH . J 6 HOH A 64 564 31 HOH HOH . J 6 HOH A 65 565 92 HOH HOH . J 6 HOH A 66 566 84 HOH HOH . J 6 HOH A 67 567 23 HOH HOH . J 6 HOH A 68 568 73 HOH HOH . J 6 HOH A 69 569 153 HOH HOH . J 6 HOH A 70 570 145 HOH HOH . J 6 HOH A 71 571 32 HOH HOH . J 6 HOH A 72 572 111 HOH HOH . J 6 HOH A 73 573 118 HOH HOH . J 6 HOH A 74 574 5 HOH HOH . J 6 HOH A 75 575 79 HOH HOH . J 6 HOH A 76 576 96 HOH HOH . J 6 HOH A 77 577 94 HOH HOH . J 6 HOH A 78 578 15 HOH HOH . J 6 HOH A 79 579 11 HOH HOH . J 6 HOH A 80 580 7 HOH HOH . J 6 HOH A 81 581 146 HOH HOH . J 6 HOH A 82 582 107 HOH HOH . J 6 HOH A 83 583 43 HOH HOH . J 6 HOH A 84 584 59 HOH HOH . J 6 HOH A 85 585 44 HOH HOH . J 6 HOH A 86 586 103 HOH HOH . J 6 HOH A 87 587 124 HOH HOH . J 6 HOH A 88 588 144 HOH HOH . J 6 HOH A 89 589 81 HOH HOH . J 6 HOH A 90 590 22 HOH HOH . J 6 HOH A 91 591 71 HOH HOH . J 6 HOH A 92 592 58 HOH HOH . J 6 HOH A 93 593 74 HOH HOH . J 6 HOH A 94 594 112 HOH HOH . J 6 HOH A 95 595 93 HOH HOH . J 6 HOH A 96 596 159 HOH HOH . J 6 HOH A 97 597 133 HOH HOH . J 6 HOH A 98 598 18 HOH HOH . J 6 HOH A 99 599 140 HOH HOH . J 6 HOH A 100 600 3 HOH HOH . J 6 HOH A 101 601 141 HOH HOH . J 6 HOH A 102 602 90 HOH HOH . J 6 HOH A 103 603 115 HOH HOH . J 6 HOH A 104 604 55 HOH HOH . J 6 HOH A 105 605 109 HOH HOH . J 6 HOH A 106 606 30 HOH HOH . J 6 HOH A 107 607 85 HOH HOH . J 6 HOH A 108 608 88 HOH HOH . J 6 HOH A 109 609 75 HOH HOH . J 6 HOH A 110 610 33 HOH HOH . J 6 HOH A 111 611 136 HOH HOH . J 6 HOH A 112 612 40 HOH HOH . J 6 HOH A 113 613 27 HOH HOH . J 6 HOH A 114 614 29 HOH HOH . J 6 HOH A 115 615 108 HOH HOH . J 6 HOH A 116 616 54 HOH HOH . J 6 HOH A 117 617 1 HOH HOH . J 6 HOH A 118 618 69 HOH HOH . J 6 HOH A 119 619 53 HOH HOH . J 6 HOH A 120 620 46 HOH HOH . J 6 HOH A 121 621 17 HOH HOH . J 6 HOH A 122 622 91 HOH HOH . J 6 HOH A 123 623 117 HOH HOH . J 6 HOH A 124 624 52 HOH HOH . J 6 HOH A 125 625 87 HOH HOH . J 6 HOH A 126 626 45 HOH HOH . J 6 HOH A 127 627 28 HOH HOH . J 6 HOH A 128 628 128 HOH HOH . J 6 HOH A 129 629 95 HOH HOH . J 6 HOH A 130 630 67 HOH HOH . J 6 HOH A 131 631 110 HOH HOH . J 6 HOH A 132 632 100 HOH HOH . J 6 HOH A 133 633 98 HOH HOH . J 6 HOH A 134 634 163 HOH HOH . J 6 HOH A 135 635 120 HOH HOH . J 6 HOH A 136 636 154 HOH HOH . J 6 HOH A 137 637 168 HOH HOH . J 6 HOH A 138 638 135 HOH HOH . J 6 HOH A 139 639 14 HOH HOH . J 6 HOH A 140 640 143 HOH HOH . J 6 HOH A 141 641 9 HOH HOH . J 6 HOH A 142 642 121 HOH HOH . J 6 HOH A 143 643 99 HOH HOH . J 6 HOH A 144 644 155 HOH HOH . J 6 HOH A 145 645 134 HOH HOH . J 6 HOH A 146 646 151 HOH HOH . J 6 HOH A 147 647 57 HOH HOH . J 6 HOH A 148 648 164 HOH HOH . J 6 HOH A 149 649 170 HOH HOH . J 6 HOH A 150 650 61 HOH HOH . J 6 HOH A 151 651 38 HOH HOH . J 6 HOH A 152 652 101 HOH HOH . J 6 HOH A 153 653 147 HOH HOH . J 6 HOH A 154 654 161 HOH HOH . J 6 HOH A 155 655 37 HOH HOH . J 6 HOH A 156 656 125 HOH HOH . J 6 HOH A 157 657 86 HOH HOH . J 6 HOH A 158 658 19 HOH HOH . J 6 HOH A 159 659 126 HOH HOH . J 6 HOH A 160 660 162 HOH HOH . J 6 HOH A 161 661 89 HOH HOH . J 6 HOH A 162 662 165 HOH HOH . J 6 HOH A 163 663 139 HOH HOH . J 6 HOH A 164 664 160 HOH HOH . J 6 HOH A 165 665 138 HOH HOH . J 6 HOH A 166 666 142 HOH HOH . J 6 HOH A 167 667 34 HOH HOH . J 6 HOH A 168 668 150 HOH HOH . J 6 HOH A 169 669 80 HOH HOH . J 6 HOH A 170 670 137 HOH HOH . J 6 HOH A 171 671 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 16.934 0.262 -8.491 1 37.5 ? C1 EDO 407 A 1 HETATM 2 O O1 EDO . . . H 5 16.77 0.69 -7.131 1 27.83 ? O1 EDO 407 A 1 HETATM 3 C C2 EDO . . . H 5 16.844 1.467 -9.425 1 38.01 ? C2 EDO 407 A 1 HETATM 4 O O2 EDO . . . H 5 15.599 2.15 -9.219 1 26.14 ? O2 EDO 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #