data_6C9G # _model_server_result.job_id AYnsOXLNlPOGbDLYXuo89A _model_server_result.datetime_utc '2024-11-24 02:11:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1101}' # _entry.id 6C9G # _exptl.entry_id 6C9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9G _cell.length_a 122.986 _cell.length_b 122.986 _cell.length_c 406.048 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 171 A ARG 173 1_555 A N TPO 172 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 172 A TPO 174 1_555 A N SER 173 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6C9G _atom_sites.fract_transf_matrix[1][1] 0.008131 _atom_sites.fract_transf_matrix[1][2] 0.004694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R93 A 1 601 1050 R93 R93 . E 5 STU A 1 602 1100 STU STU . F 6 AMP C 1 1101 1101 AMP AMP . G 6 AMP C 1 1102 1102 AMP AMP . H 6 AMP C 1 1103 1103 AMP AMP . I 7 HOH A 1 701 9 HOH HOH . I 7 HOH A 2 702 39 HOH HOH . I 7 HOH A 3 703 15 HOH HOH . I 7 HOH A 4 704 18 HOH HOH . I 7 HOH A 5 705 6 HOH HOH . I 7 HOH A 6 706 44 HOH HOH . I 7 HOH A 7 707 3 HOH HOH . I 7 HOH A 8 708 12 HOH HOH . I 7 HOH A 9 709 2 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 13 HOH HOH . I 7 HOH A 12 712 50 HOH HOH . I 7 HOH A 13 713 8 HOH HOH . I 7 HOH A 14 714 4 HOH HOH . I 7 HOH A 15 715 11 HOH HOH . I 7 HOH A 16 716 47 HOH HOH . I 7 HOH A 17 717 41 HOH HOH . I 7 HOH A 18 718 45 HOH HOH . I 7 HOH A 19 719 34 HOH HOH . I 7 HOH A 20 720 25 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 43 HOH HOH . I 7 HOH A 23 723 16 HOH HOH . I 7 HOH A 24 724 7 HOH HOH . I 7 HOH A 25 725 24 HOH HOH . I 7 HOH A 26 726 29 HOH HOH . I 7 HOH A 27 727 14 HOH HOH . I 7 HOH A 28 728 37 HOH HOH . I 7 HOH A 29 729 5 HOH HOH . I 7 HOH A 30 730 33 HOH HOH . I 7 HOH A 31 731 40 HOH HOH . I 7 HOH A 32 732 20 HOH HOH . I 7 HOH A 33 733 28 HOH HOH . I 7 HOH A 34 734 35 HOH HOH . I 7 HOH A 35 735 30 HOH HOH . I 7 HOH A 36 736 23 HOH HOH . I 7 HOH A 37 737 48 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 46 HOH HOH . I 7 HOH A 40 740 49 HOH HOH . I 7 HOH A 41 741 19 HOH HOH . J 7 HOH B 1 301 31 HOH HOH . J 7 HOH B 2 302 42 HOH HOH . J 7 HOH B 3 303 27 HOH HOH . J 7 HOH B 4 304 17 HOH HOH . J 7 HOH B 5 305 52 HOH HOH . J 7 HOH B 6 306 51 HOH HOH . J 7 HOH B 7 307 22 HOH HOH . K 7 HOH C 1 1201 26 HOH HOH . K 7 HOH C 2 1202 36 HOH HOH . K 7 HOH C 3 1203 32 HOH HOH . K 7 HOH C 4 1204 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 6 -39.817 69.636 13.395 1 97.65 ? P AMP 1101 C 1 HETATM 2 O O1P AMP . . . F 6 -38.653 69.333 12.486 1 116.32 ? O1P AMP 1101 C 1 HETATM 3 O O2P AMP . . . F 6 -39.428 70.413 14.625 1 105.81 ? O2P AMP 1101 C 1 HETATM 4 O O3P AMP . . . F 6 -40.73 68.459 13.644 1 83.76 ? O3P AMP 1101 C 1 HETATM 5 O O5' AMP . . . F 6 -40.736 70.628 12.55 1 80.55 ? O5' AMP 1101 C 1 HETATM 6 C C5' AMP . . . F 6 -40.727 72.03 12.795 1 90.54 ? C5' AMP 1101 C 1 HETATM 7 C C4' AMP . . . F 6 -41.485 72.797 11.734 1 111.27 ? C4' AMP 1101 C 1 HETATM 8 O O4' AMP . . . F 6 -40.667 72.91 10.546 1 117.55 ? O4' AMP 1101 C 1 HETATM 9 C C3' AMP . . . F 6 -42.825 72.202 11.304 1 113.13 ? C3' AMP 1101 C 1 HETATM 10 O O3' AMP . . . F 6 -43.798 73.241 11.182 1 118.93 ? O3' AMP 1101 C 1 HETATM 11 C C2' AMP . . . F 6 -42.542 71.589 9.93 1 108.94 ? C2' AMP 1101 C 1 HETATM 12 O O2' AMP . . . F 6 -43.629 71.672 9.032 1 107.02 ? O2' AMP 1101 C 1 HETATM 13 C C1' AMP . . . F 6 -41.339 72.387 9.418 1 112.78 ? C1' AMP 1101 C 1 HETATM 14 N N9 AMP . . . F 6 -40.364 71.57 8.689 1 113.13 ? N9 AMP 1101 C 1 HETATM 15 C C8 AMP . . . F 6 -39.73 70.499 9.205 1 114.32 ? C8 AMP 1101 C 1 HETATM 16 N N7 AMP . . . F 6 -38.876 69.948 8.307 1 120.06 ? N7 AMP 1101 C 1 HETATM 17 C C5 AMP . . . F 6 -38.954 70.68 7.182 1 116.63 ? C5 AMP 1101 C 1 HETATM 18 C C6 AMP . . . F 6 -38.316 70.646 5.847 1 117.54 ? C6 AMP 1101 C 1 HETATM 19 N N6 AMP . . . F 6 -37.407 69.693 5.533 1 121.4 ? N6 AMP 1101 C 1 HETATM 20 N N1 AMP . . . F 6 -38.676 71.595 4.957 1 117.78 ? N1 AMP 1101 C 1 HETATM 21 C C2 AMP . . . F 6 -39.58 72.544 5.259 1 112.4 ? C2 AMP 1101 C 1 HETATM 22 N N3 AMP . . . F 6 -40.198 72.635 6.448 1 106.74 ? N3 AMP 1101 C 1 HETATM 23 C C4 AMP . . . F 6 -39.935 71.748 7.436 1 111.07 ? C4 AMP 1101 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #