data_6C9G # _model_server_result.job_id LJG13_WPfg6omfko964x0g _model_server_result.datetime_utc '2024-11-23 23:15:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6C9G # _exptl.entry_id 6C9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.918 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-{[6-chloro-5-(2'-hydroxy[1,1'-biphenyl]-4-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9G _cell.length_a 122.986 _cell.length_b 122.986 _cell.length_c 406.048 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 171 A ARG 173 1_555 A N TPO 172 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 172 A TPO 174 1_555 A N SER 173 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C27 H20 Cl N3 O4' _chem_comp.formula_weight 485.918 _chem_comp.id R93 _chem_comp.mon_nstd_flag . _chem_comp.name "5-{[6-chloro-5-(2'-hydroxy[1,1'-biphenyl]-4-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R93 doub 316 n y C27 C26 R93 sing 317 n y C28 C29 R93 sing 318 n y C21 C6 R93 doub 319 n y C21 C2 R93 sing 320 n y C9 C35 R93 doub 321 n y C9 C34 R93 sing 322 n y C6 C5 R93 sing 323 n y C35 C33 R93 sing 324 n y C26 O25 R93 sing 325 n n C26 C31 R93 doub 326 n y C29 C32 R93 sing 327 n n C29 C30 R93 doub 328 n y O25 C23 R93 sing 329 n n C23 N21 R93 sing 330 n y C23 N22 R93 doub 331 n y N21 C12 R93 sing 332 n y N22 C13 R93 sing 333 n y C12 C13 R93 doub 334 n y C12 C11 R93 sing 335 n y C13 C14 R93 sing 336 n y C11 C10 R93 doub 337 n y C14 C7 R93 doub 338 n y C10 C7 R93 sing 339 n y C10 CL1 R93 sing 340 n n C7 C2 R93 sing 341 n n C2 C3 R93 doub 342 n y C5 C34 R93 sing 343 n n C5 C4 R93 doub 344 n y C34 C1 R93 doub 345 n y C33 C8 R93 doub 346 n y C30 C31 R93 sing 347 n y C30 C18 R93 sing 348 n n C3 C4 R93 sing 349 n y C1 C8 R93 sing 350 n y C1 O23 R93 sing 351 n n C18 N8 R93 sing 352 n n C18 O20 R93 doub 353 n n N8 O21 R93 sing 354 n n N8 H1 R93 sing 355 n n O21 H2 R93 sing 356 n n C32 H3 R93 sing 357 n n C32 H4 R93 sing 358 n n C32 H5 R93 sing 359 n n C28 H6 R93 sing 360 n n C27 H7 R93 sing 361 n n C31 H8 R93 sing 362 n n N21 H9 R93 sing 363 n n C11 H10 R93 sing 364 n n C14 H12 R93 sing 365 n n C21 H13 R93 sing 366 n n C3 H14 R93 sing 367 n n C4 H15 R93 sing 368 n n C6 H16 R93 sing 369 n n C9 H17 R93 sing 370 n n C35 H18 R93 sing 371 n n C33 H19 R93 sing 372 n n C8 H20 R93 sing 373 n n O23 H21 R93 sing 374 n n # _atom_sites.entry_id 6C9G _atom_sites.fract_transf_matrix[1][1] 0.008131 _atom_sites.fract_transf_matrix[1][2] 0.004694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R93 A 1 601 1050 R93 R93 . E 5 STU A 1 602 1100 STU STU . F 6 AMP C 1 1101 1101 AMP AMP . G 6 AMP C 1 1102 1102 AMP AMP . H 6 AMP C 1 1103 1103 AMP AMP . I 7 HOH A 1 701 9 HOH HOH . I 7 HOH A 2 702 39 HOH HOH . I 7 HOH A 3 703 15 HOH HOH . I 7 HOH A 4 704 18 HOH HOH . I 7 HOH A 5 705 6 HOH HOH . I 7 HOH A 6 706 44 HOH HOH . I 7 HOH A 7 707 3 HOH HOH . I 7 HOH A 8 708 12 HOH HOH . I 7 HOH A 9 709 2 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 13 HOH HOH . I 7 HOH A 12 712 50 HOH HOH . I 7 HOH A 13 713 8 HOH HOH . I 7 HOH A 14 714 4 HOH HOH . I 7 HOH A 15 715 11 HOH HOH . I 7 HOH A 16 716 47 HOH HOH . I 7 HOH A 17 717 41 HOH HOH . I 7 HOH A 18 718 45 HOH HOH . I 7 HOH A 19 719 34 HOH HOH . I 7 HOH A 20 720 25 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 43 HOH HOH . I 7 HOH A 23 723 16 HOH HOH . I 7 HOH A 24 724 7 HOH HOH . I 7 HOH A 25 725 24 HOH HOH . I 7 HOH A 26 726 29 HOH HOH . I 7 HOH A 27 727 14 HOH HOH . I 7 HOH A 28 728 37 HOH HOH . I 7 HOH A 29 729 5 HOH HOH . I 7 HOH A 30 730 33 HOH HOH . I 7 HOH A 31 731 40 HOH HOH . I 7 HOH A 32 732 20 HOH HOH . I 7 HOH A 33 733 28 HOH HOH . I 7 HOH A 34 734 35 HOH HOH . I 7 HOH A 35 735 30 HOH HOH . I 7 HOH A 36 736 23 HOH HOH . I 7 HOH A 37 737 48 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 46 HOH HOH . I 7 HOH A 40 740 49 HOH HOH . I 7 HOH A 41 741 19 HOH HOH . J 7 HOH B 1 301 31 HOH HOH . J 7 HOH B 2 302 42 HOH HOH . J 7 HOH B 3 303 27 HOH HOH . J 7 HOH B 4 304 17 HOH HOH . J 7 HOH B 5 305 52 HOH HOH . J 7 HOH B 6 306 51 HOH HOH . J 7 HOH B 7 307 22 HOH HOH . K 7 HOH C 1 1201 26 HOH HOH . K 7 HOH C 2 1202 36 HOH HOH . K 7 HOH C 3 1203 32 HOH HOH . K 7 HOH C 4 1204 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 R93 . . . D 4 -24.246 26.695 -37.529 1 156.41 ? O20 R93 601 A 1 HETATM 2 C C18 R93 . . . D 4 -23.411 26.048 -38.14 1 140.28 ? C18 R93 601 A 1 HETATM 3 N N8 R93 . . . D 4 -22.908 24.79 -37.599 1 161.88 ? N8 R93 601 A 1 HETATM 4 O O21 R93 . . . D 4 -23.689 24.413 -36.426 1 177.7 ? O21 R93 601 A 1 HETATM 5 C C30 R93 . . . D 4 -22.876 26.57 -39.447 1 98.14 ? C30 R93 601 A 1 HETATM 6 C C29 R93 . . . D 4 -23.289 25.981 -40.638 1 93.91 ? C29 R93 601 A 1 HETATM 7 C C32 R93 . . . D 4 -24.261 24.806 -40.57 1 89.13 ? C32 R93 601 A 1 HETATM 8 C C28 R93 . . . D 4 -22.809 26.47 -41.857 1 98.11 ? C28 R93 601 A 1 HETATM 9 C C27 R93 . . . D 4 -21.912 27.554 -41.863 1 91.02 ? C27 R93 601 A 1 HETATM 10 C C31 R93 . . . D 4 -21.994 27.636 -39.447 1 82.39 ? C31 R93 601 A 1 HETATM 11 C C26 R93 . . . D 4 -21.509 28.133 -40.652 1 77.87 ? C26 R93 601 A 1 HETATM 12 O O25 R93 . . . D 4 -20.606 29.226 -40.611 1 70.91 ? O25 R93 601 A 1 HETATM 13 C C23 R93 . . . D 4 -19.239 28.861 -40.495 1 60.26 ? C23 R93 601 A 1 HETATM 14 N N21 R93 . . . D 4 -18.237 29.76 -40.479 1 68.96 ? N21 R93 601 A 1 HETATM 15 C C12 R93 . . . D 4 -17.044 29.064 -40.347 1 51.61 ? C12 R93 601 A 1 HETATM 16 C C11 R93 . . . D 4 -15.716 29.49 -40.26 1 45.38 ? C11 R93 601 A 1 HETATM 17 C C10 R93 . . . D 4 -14.704 28.56 -40.114 1 41.04 ? C10 R93 601 A 1 HETATM 18 CL CL1 R93 . . . D 4 -13.061 29.143 -40.002 1 72.78 ? CL1 R93 601 A 1 HETATM 19 N N22 R93 . . . D 4 -18.721 27.622 -40.376 1 50.45 ? N22 R93 601 A 1 HETATM 20 C C13 R93 . . . D 4 -17.366 27.719 -40.283 1 38.44 ? C13 R93 601 A 1 HETATM 21 C C14 R93 . . . D 4 -16.337 26.783 -40.137 1 35.13 ? C14 R93 601 A 1 HETATM 22 C C7 R93 . . . D 4 -15.008 27.194 -40.055 1 47.07 ? C7 R93 601 A 1 HETATM 23 C C2 R93 . . . D 4 -13.865 26.138 -39.905 1 47.2 ? C2 R93 601 A 1 HETATM 24 C C21 R93 . . . D 4 -13.837 25.083 -40.759 1 54.44 ? C21 R93 601 A 1 HETATM 25 C C3 R93 . . . D 4 -12.869 26.239 -38.93 1 42.67 ? C3 R93 601 A 1 HETATM 26 C C4 R93 . . . D 4 -11.876 25.278 -38.843 1 43.26 ? C4 R93 601 A 1 HETATM 27 C C5 R93 . . . D 4 -11.869 24.21 -39.724 1 45.33 ? C5 R93 601 A 1 HETATM 28 C C6 R93 . . . D 4 -12.848 24.108 -40.687 1 47.49 ? C6 R93 601 A 1 HETATM 29 C C34 R93 . . . D 4 -10.749 23.146 -39.612 1 49.74 ? C34 R93 601 A 1 HETATM 30 C C9 R93 . . . D 4 -9.99 22.832 -40.754 1 56.66 ? C9 R93 601 A 1 HETATM 31 C C35 R93 . . . D 4 -8.965 21.873 -40.676 1 55.26 ? C35 R93 601 A 1 HETATM 32 C C33 R93 . . . D 4 -8.7 21.227 -39.455 1 49 ? C33 R93 601 A 1 HETATM 33 C C8 R93 . . . D 4 -9.453 21.544 -38.317 1 49.41 ? C8 R93 601 A 1 HETATM 34 C C1 R93 . . . D 4 -10.474 22.501 -38.397 1 41.25 ? C1 R93 601 A 1 HETATM 35 O O23 R93 . . . D 4 -11.23 22.803 -37.237 1 59.09 ? O23 R93 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #