data_6C9G # _model_server_result.job_id 4r-KS6BAr8ly9ZyIwJd3DQ _model_server_result.datetime_utc '2024-10-19 03:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6C9G # _exptl.entry_id 6C9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9G _cell.length_a 122.986 _cell.length_b 122.986 _cell.length_c 406.048 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 171 A ARG 173 1_555 A N TPO 172 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 172 A TPO 174 1_555 A N SER 173 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 388 n n O4 C21 STU sing 389 n n C25 C24 STU sing 390 n n C25 N3 STU sing 391 n n C25 H25 STU sing 392 n n C24 C23 STU sing 393 n n C24 H241 STU sing 394 n n C24 H242 STU sing 395 n n C23 C22 STU sing 396 n n C23 N4 STU sing 397 n n C23 H23 STU sing 398 n n C22 C21 STU sing 399 n n C22 O6 STU sing 400 n n C22 H22 STU sing 401 n n C21 C26 STU sing 402 n n C21 N2 STU sing 403 n n C26 H261 STU sing 404 n n C26 H262 STU sing 405 n n C26 H263 STU sing 406 n n N2 C18 STU sing 407 n y N2 C17 STU sing 408 n y C18 C19 STU doub 409 n y C18 C11 STU sing 410 n y C19 C6 STU sing 411 n y C19 N3 STU sing 412 n y C6 C7 STU doub 413 n y C6 C5 STU sing 414 n y C7 C10 STU sing 415 n y C7 C8 STU sing 416 n n C10 C11 STU doub 417 n y C10 C9 STU sing 418 n n C11 C12 STU sing 419 n y C12 C17 STU doub 420 n y C12 C13 STU sing 421 n y C17 C16 STU sing 422 n y C16 C15 STU doub 423 n y C16 H16 STU sing 424 n n C15 C14 STU sing 425 n y C15 H15 STU sing 426 n n C14 C13 STU doub 427 n y C14 H14 STU sing 428 n n C13 H13 STU sing 429 n n C9 N1 STU sing 430 n n C9 H91 STU sing 431 n n C9 H92 STU sing 432 n n N1 C8 STU sing 433 n n N1 HN1 STU sing 434 n n C8 O5 STU doub 435 n n C5 C20 STU doub 436 n y C5 C4 STU sing 437 n y C20 C1 STU sing 438 n y C20 N3 STU sing 439 n y C1 C2 STU doub 440 n y C1 H1 STU sing 441 n n C2 C3 STU sing 442 n y C2 H2 STU sing 443 n n C3 C4 STU doub 444 n y C3 H3 STU sing 445 n n C4 H4 STU sing 446 n n O6 C27 STU sing 447 n n C27 H271 STU sing 448 n n C27 H272 STU sing 449 n n C27 H273 STU sing 450 n n N4 C28 STU sing 451 n n N4 HN4 STU sing 452 n n C28 H281 STU sing 453 n n C28 H282 STU sing 454 n n C28 H283 STU sing 455 n n # _atom_sites.entry_id 6C9G _atom_sites.fract_transf_matrix[1][1] 0.008131 _atom_sites.fract_transf_matrix[1][2] 0.004694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R93 A 1 601 1050 R93 R93 . E 5 STU A 1 602 1100 STU STU . F 6 AMP C 1 1101 1101 AMP AMP . G 6 AMP C 1 1102 1102 AMP AMP . H 6 AMP C 1 1103 1103 AMP AMP . I 7 HOH A 1 701 9 HOH HOH . I 7 HOH A 2 702 39 HOH HOH . I 7 HOH A 3 703 15 HOH HOH . I 7 HOH A 4 704 18 HOH HOH . I 7 HOH A 5 705 6 HOH HOH . I 7 HOH A 6 706 44 HOH HOH . I 7 HOH A 7 707 3 HOH HOH . I 7 HOH A 8 708 12 HOH HOH . I 7 HOH A 9 709 2 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 13 HOH HOH . I 7 HOH A 12 712 50 HOH HOH . I 7 HOH A 13 713 8 HOH HOH . I 7 HOH A 14 714 4 HOH HOH . I 7 HOH A 15 715 11 HOH HOH . I 7 HOH A 16 716 47 HOH HOH . I 7 HOH A 17 717 41 HOH HOH . I 7 HOH A 18 718 45 HOH HOH . I 7 HOH A 19 719 34 HOH HOH . I 7 HOH A 20 720 25 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 43 HOH HOH . I 7 HOH A 23 723 16 HOH HOH . I 7 HOH A 24 724 7 HOH HOH . I 7 HOH A 25 725 24 HOH HOH . I 7 HOH A 26 726 29 HOH HOH . I 7 HOH A 27 727 14 HOH HOH . I 7 HOH A 28 728 37 HOH HOH . I 7 HOH A 29 729 5 HOH HOH . I 7 HOH A 30 730 33 HOH HOH . I 7 HOH A 31 731 40 HOH HOH . I 7 HOH A 32 732 20 HOH HOH . I 7 HOH A 33 733 28 HOH HOH . I 7 HOH A 34 734 35 HOH HOH . I 7 HOH A 35 735 30 HOH HOH . I 7 HOH A 36 736 23 HOH HOH . I 7 HOH A 37 737 48 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 46 HOH HOH . I 7 HOH A 40 740 49 HOH HOH . I 7 HOH A 41 741 19 HOH HOH . J 7 HOH B 1 301 31 HOH HOH . J 7 HOH B 2 302 42 HOH HOH . J 7 HOH B 3 303 27 HOH HOH . J 7 HOH B 4 304 17 HOH HOH . J 7 HOH B 5 305 52 HOH HOH . J 7 HOH B 6 306 51 HOH HOH . J 7 HOH B 7 307 22 HOH HOH . K 7 HOH C 1 1201 26 HOH HOH . K 7 HOH C 2 1202 36 HOH HOH . K 7 HOH C 3 1203 32 HOH HOH . K 7 HOH C 4 1204 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . E 5 -19.449 21.086 -26.956 1 35.33 ? O4 STU 602 A 1 HETATM 2 C C25 STU . . . E 5 -18.847 20.063 -26.107 1 30.6 ? C25 STU 602 A 1 HETATM 3 C C24 STU . . . E 5 -19.909 19.507 -25.119 1 36.54 ? C24 STU 602 A 1 HETATM 4 C C23 STU . . . E 5 -21.264 20.036 -25.51 1 33.25 ? C23 STU 602 A 1 HETATM 5 C C22 STU . . . E 5 -21.196 21.521 -25.389 1 44.38 ? C22 STU 602 A 1 HETATM 6 C C21 STU . . . E 5 -20.372 22.083 -26.483 1 45.8 ? C21 STU 602 A 1 HETATM 7 C C26 STU . . . E 5 -21.277 22.396 -27.687 1 39.7 ? C26 STU 602 A 1 HETATM 8 N N2 STU . . . E 5 -19.717 23.306 -26.004 1 41.45 ? N2 STU 602 A 1 HETATM 9 C C18 STU . . . E 5 -18.421 23.127 -25.413 1 37.81 ? C18 STU 602 A 1 HETATM 10 C C19 STU . . . E 5 -17.6 22.03 -25.195 1 37.5 ? C19 STU 602 A 1 HETATM 11 C C6 STU . . . E 5 -16.336 22.199 -24.567 1 40.79 ? C6 STU 602 A 1 HETATM 12 C C7 STU . . . E 5 -15.907 23.487 -24.143 1 41.49 ? C7 STU 602 A 1 HETATM 13 C C10 STU . . . E 5 -16.715 24.564 -24.363 1 41.31 ? C10 STU 602 A 1 HETATM 14 C C11 STU . . . E 5 -17.967 24.392 -24.988 1 43.03 ? C11 STU 602 A 1 HETATM 15 C C12 STU . . . E 5 -19.042 25.414 -25.338 1 40.77 ? C12 STU 602 A 1 HETATM 16 C C17 STU . . . E 5 -20.078 24.705 -25.94 1 41.96 ? C17 STU 602 A 1 HETATM 17 C C16 STU . . . E 5 -21.209 25.396 -26.369 1 45.35 ? C16 STU 602 A 1 HETATM 18 C C15 STU . . . E 5 -21.313 26.76 -26.205 1 45.09 ? C15 STU 602 A 1 HETATM 19 C C14 STU . . . E 5 -20.298 27.466 -25.605 1 37.77 ? C14 STU 602 A 1 HETATM 20 C C13 STU . . . E 5 -19.151 26.809 -25.165 1 32.41 ? C13 STU 602 A 1 HETATM 21 C C9 STU . . . E 5 -16.086 25.861 -23.853 1 41.43 ? C9 STU 602 A 1 HETATM 22 N N1 STU . . . E 5 -14.809 25.421 -23.285 1 37.21 ? N1 STU 602 A 1 HETATM 23 C C8 STU . . . E 5 -14.676 24.003 -23.458 1 25.91 ? C8 STU 602 A 1 HETATM 24 O O5 STU . . . E 5 -13.575 23.253 -23.034 1 42.65 ? O5 STU 602 A 1 HETATM 25 C C5 STU . . . E 5 -15.707 20.81 -24.474 1 43.57 ? C5 STU 602 A 1 HETATM 26 C C20 STU . . . E 5 -16.617 19.927 -25.048 1 38.26 ? C20 STU 602 A 1 HETATM 27 C C1 STU . . . E 5 -16.354 18.569 -25.12 1 42.49 ? C1 STU 602 A 1 HETATM 28 C C2 STU . . . E 5 -15.17 18.073 -24.613 1 44.86 ? C2 STU 602 A 1 HETATM 29 C C3 STU . . . E 5 -14.235 18.921 -24.044 1 46.11 ? C3 STU 602 A 1 HETATM 30 C C4 STU . . . E 5 -14.49 20.3 -23.96 1 43.12 ? C4 STU 602 A 1 HETATM 31 N N3 STU . . . E 5 -17.781 20.651 -25.48 1 37.02 ? N3 STU 602 A 1 HETATM 32 O O6 STU . . . E 5 -20.615 21.839 -24.089 1 36.84 ? O6 STU 602 A 1 HETATM 33 C C27 STU . . . E 5 -21.355 22.805 -23.316 1 56.41 ? C27 STU 602 A 1 HETATM 34 N N4 STU . . . E 5 -22.244 19.457 -24.601 1 35.58 ? N4 STU 602 A 1 HETATM 35 C C28 STU . . . E 5 -23.579 19.942 -24.865 1 34.68 ? C28 STU 602 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #