data_6C9J # _model_server_result.job_id hRGIVcgtW5RE_FvowmYZ1g _model_server_result.datetime_utc '2024-10-19 03:46:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6C9J # _exptl.entry_id 6C9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.886 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[6-chloro-5-(1-methyl-1H-indol-5-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9J _cell.length_a 123.296 _cell.length_b 123.296 _cell.length_c 404.921 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 171 A ARG 173 1_555 A N TPO 172 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 172 A TPO 174 1_555 A N SER 173 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C24 H19 Cl N4 O3' _chem_comp.formula_weight 446.886 _chem_comp.id R34 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[6-chloro-5-(1-methyl-1H-indol-5-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R34 doub 314 n y C27 C26 R34 sing 315 n y C28 C29 R34 sing 316 n y C8 C9 R34 doub 317 n y C8 C6 R34 sing 318 n y O25 C26 R34 sing 319 n n O25 C23 R34 sing 320 n n C21 C6 R34 doub 321 n y C21 C2 R34 sing 322 n y C9 N7 R34 sing 323 n y C26 C31 R34 doub 324 n y C6 C5 R34 sing 325 n y C23 N22 R34 doub 326 n y C23 N21 R34 sing 327 n y C29 C32 R34 sing 328 n n C29 C30 R34 doub 329 n y N22 C13 R34 sing 330 n y N21 C12 R34 sing 331 n y C13 C12 R34 doub 332 n y C13 C14 R34 sing 333 n y C12 C11 R34 sing 334 n y C14 C7 R34 doub 335 n y C11 C10 R34 doub 336 n y C7 C10 R34 sing 337 n y C7 C2 R34 sing 338 n n C10 CL1 R34 sing 339 n n C2 C3 R34 doub 340 n y N7 C5 R34 sing 341 n y N7 C1 R34 sing 342 n n C5 C4 R34 doub 343 n y C31 C30 R34 sing 344 n y C30 C18 R34 sing 345 n n C3 C4 R34 sing 346 n y O21 N8 R34 sing 347 n n C18 O20 R34 doub 348 n n C18 N8 R34 sing 349 n n C21 H1 R34 sing 350 n n C4 H2 R34 sing 351 n n C3 H3 R34 sing 352 n n C1 H4 R34 sing 353 n n C1 H5 R34 sing 354 n n C1 H6 R34 sing 355 n n C11 H7 R34 sing 356 n n C14 H8 R34 sing 357 n n N21 H9 R34 sing 358 n n C27 H11 R34 sing 359 n n C28 H12 R34 sing 360 n n C31 H13 R34 sing 361 n n C32 H14 R34 sing 362 n n C32 H15 R34 sing 363 n n C32 H16 R34 sing 364 n n C8 H17 R34 sing 365 n n C9 H18 R34 sing 366 n n N8 H19 R34 sing 367 n n O21 H20 R34 sing 368 n n # _atom_sites.entry_id 6C9J _atom_sites.fract_transf_matrix[1][1] 0.008111 _atom_sites.fract_transf_matrix[1][2] 0.004683 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R34 A 1 601 1050 R34 R34 . E 5 STU A 1 602 1100 STU STU . F 6 AMP C 1 401 1103 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 R34 . . . D 4 -12.525 24.461 -40.598 1 51 ? C6 R34 601 A 1 HETATM 2 C C21 R34 . . . D 4 -13.517 25.444 -40.731 1 49.97 ? C21 R34 601 A 1 HETATM 3 C C5 R34 . . . D 4 -11.721 24.417 -39.469 1 56.06 ? C5 R34 601 A 1 HETATM 4 N N7 R34 . . . D 4 -10.871 23.397 -39.582 1 55.57 ? N7 R34 601 A 1 HETATM 5 C C4 R34 . . . D 4 -11.903 25.377 -38.448 1 61.32 ? C4 R34 601 A 1 HETATM 6 C C3 R34 . . . D 4 -12.892 26.358 -38.581 1 56.5 ? C3 R34 601 A 1 HETATM 7 C C2 R34 . . . D 4 -13.688 26.404 -39.729 1 48.63 ? C2 R34 601 A 1 HETATM 8 C C1 R34 . . . D 4 -9.875 23.022 -38.607 1 51 ? C1 R34 601 A 1 HETATM 9 C C7 R34 . . . D 4 -14.791 27.466 -39.903 1 43.57 ? C7 R34 601 A 1 HETATM 10 C C10 R34 . . . D 4 -14.491 28.845 -39.87 1 48.76 ? C10 R34 601 A 1 HETATM 11 C C11 R34 . . . D 4 -15.517 29.783 -40.038 1 44.15 ? C11 R34 601 A 1 HETATM 12 C C12 R34 . . . D 4 -16.847 29.349 -40.219 1 54.06 ? C12 R34 601 A 1 HETATM 13 C C13 R34 . . . D 4 -17.142 27.98 -40.244 1 45.17 ? C13 R34 601 A 1 HETATM 14 C C14 R34 . . . D 4 -16.11 27.033 -40.084 1 40.74 ? C14 R34 601 A 1 HETATM 15 N N21 R34 . . . D 4 -18.044 30.01 -40.397 1 65.06 ? N21 R34 601 A 1 HETATM 16 N N22 R34 . . . D 4 -18.498 27.874 -40.434 1 50.34 ? N22 R34 601 A 1 HETATM 17 C C23 R34 . . . D 4 -19.012 29.105 -40.529 1 59.76 ? C23 R34 601 A 1 HETATM 18 O O25 R34 . . . D 4 -20.273 29.369 -40.706 1 66.87 ? O25 R34 601 A 1 HETATM 19 C C26 R34 . . . D 4 -21.212 28.334 -40.63 1 78.03 ? C26 R34 601 A 1 HETATM 20 C C27 R34 . . . D 4 -21.622 27.657 -41.759 1 91.87 ? C27 R34 601 A 1 HETATM 21 C C28 R34 . . . D 4 -22.557 26.637 -41.65 1 99.25 ? C28 R34 601 A 1 HETATM 22 C C29 R34 . . . D 4 -23.077 26.305 -40.404 1 96.85 ? C29 R34 601 A 1 HETATM 23 C C30 R34 . . . D 4 -22.661 26.995 -39.274 1 111.61 ? C30 R34 601 A 1 HETATM 24 C C31 R34 . . . D 4 -21.73 28.012 -39.399 1 91.89 ? C31 R34 601 A 1 HETATM 25 C C32 R34 . . . D 4 -24.095 25.192 -40.297 1 83.73 ? C32 R34 601 A 1 HETATM 26 CL CL1 R34 . . . D 4 -12.852 29.418 -39.648 1 85.68 ? CL1 R34 601 A 1 HETATM 27 C C8 R34 . . . D 4 -12.089 23.392 -41.42 1 58.03 ? C8 R34 601 A 1 HETATM 28 C C9 R34 . . . D 4 -11.066 22.763 -40.721 1 61.91 ? C9 R34 601 A 1 HETATM 29 C C18 R34 . . . D 4 -23.188 26.678 -37.876 1 139.44 ? C18 R34 601 A 1 HETATM 30 N N8 R34 . . . D 4 -22.74 25.522 -37.169 1 146.51 ? N8 R34 601 A 1 HETATM 31 O O20 R34 . . . D 4 -23.974 27.42 -37.353 1 149.26 ? O20 R34 601 A 1 HETATM 32 O O21 R34 . . . D 4 -22.346 24.501 -38.081 1 149.92 ? O21 R34 601 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #