data_6C9J # _model_server_result.job_id ATmK9rT-fIv3PxSzYdsAHw _model_server_result.datetime_utc '2024-10-19 03:49:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6C9J # _exptl.entry_id 6C9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9J _cell.length_a 123.296 _cell.length_b 123.296 _cell.length_c 404.921 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 171 A ARG 173 1_555 A N TPO 172 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 172 A TPO 174 1_555 A N SER 173 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 382 n n O4 C21 STU sing 383 n n C25 C24 STU sing 384 n n C25 N3 STU sing 385 n n C25 H25 STU sing 386 n n C24 C23 STU sing 387 n n C24 H241 STU sing 388 n n C24 H242 STU sing 389 n n C23 C22 STU sing 390 n n C23 N4 STU sing 391 n n C23 H23 STU sing 392 n n C22 C21 STU sing 393 n n C22 O6 STU sing 394 n n C22 H22 STU sing 395 n n C21 C26 STU sing 396 n n C21 N2 STU sing 397 n n C26 H261 STU sing 398 n n C26 H262 STU sing 399 n n C26 H263 STU sing 400 n n N2 C18 STU sing 401 n y N2 C17 STU sing 402 n y C18 C19 STU doub 403 n y C18 C11 STU sing 404 n y C19 C6 STU sing 405 n y C19 N3 STU sing 406 n y C6 C7 STU doub 407 n y C6 C5 STU sing 408 n y C7 C10 STU sing 409 n y C7 C8 STU sing 410 n n C10 C11 STU doub 411 n y C10 C9 STU sing 412 n n C11 C12 STU sing 413 n y C12 C17 STU doub 414 n y C12 C13 STU sing 415 n y C17 C16 STU sing 416 n y C16 C15 STU doub 417 n y C16 H16 STU sing 418 n n C15 C14 STU sing 419 n y C15 H15 STU sing 420 n n C14 C13 STU doub 421 n y C14 H14 STU sing 422 n n C13 H13 STU sing 423 n n C9 N1 STU sing 424 n n C9 H91 STU sing 425 n n C9 H92 STU sing 426 n n N1 C8 STU sing 427 n n N1 HN1 STU sing 428 n n C8 O5 STU doub 429 n n C5 C20 STU doub 430 n y C5 C4 STU sing 431 n y C20 C1 STU sing 432 n y C20 N3 STU sing 433 n y C1 C2 STU doub 434 n y C1 H1 STU sing 435 n n C2 C3 STU sing 436 n y C2 H2 STU sing 437 n n C3 C4 STU doub 438 n y C3 H3 STU sing 439 n n C4 H4 STU sing 440 n n O6 C27 STU sing 441 n n C27 H271 STU sing 442 n n C27 H272 STU sing 443 n n C27 H273 STU sing 444 n n N4 C28 STU sing 445 n n N4 HN4 STU sing 446 n n C28 H281 STU sing 447 n n C28 H282 STU sing 448 n n C28 H283 STU sing 449 n n # _atom_sites.entry_id 6C9J _atom_sites.fract_transf_matrix[1][1] 0.008111 _atom_sites.fract_transf_matrix[1][2] 0.004683 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R34 A 1 601 1050 R34 R34 . E 5 STU A 1 602 1100 STU STU . F 6 AMP C 1 401 1103 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . E 5 -19.626 21.198 -26.816 1 37.67 ? O4 STU 602 A 1 HETATM 2 C C25 STU . . . E 5 -19.041 20.144 -26.008 1 35.49 ? C25 STU 602 A 1 HETATM 3 C C24 STU . . . E 5 -20.068 19.638 -24.952 1 28.69 ? C24 STU 602 A 1 HETATM 4 C C23 STU . . . E 5 -21.433 20.133 -25.347 1 31.56 ? C23 STU 602 A 1 HETATM 5 C C22 STU . . . E 5 -21.404 21.613 -25.251 1 41.25 ? C22 STU 602 A 1 HETATM 6 C C21 STU . . . E 5 -20.576 22.162 -26.329 1 40.92 ? C21 STU 602 A 1 HETATM 7 C C26 STU . . . E 5 -21.497 22.477 -27.515 1 45.94 ? C26 STU 602 A 1 HETATM 8 N N2 STU . . . E 5 -19.933 23.375 -25.836 1 40.76 ? N2 STU 602 A 1 HETATM 9 C C18 STU . . . E 5 -18.625 23.192 -25.265 1 39.48 ? C18 STU 602 A 1 HETATM 10 C C19 STU . . . E 5 -17.806 22.091 -25.086 1 41.41 ? C19 STU 602 A 1 HETATM 11 C C6 STU . . . E 5 -16.541 22.245 -24.478 1 40.71 ? C6 STU 602 A 1 HETATM 12 C C7 STU . . . E 5 -16.121 23.522 -24.054 1 37.29 ? C7 STU 602 A 1 HETATM 13 C C10 STU . . . E 5 -16.917 24.609 -24.227 1 41.14 ? C10 STU 602 A 1 HETATM 14 C C11 STU . . . E 5 -18.178 24.454 -24.827 1 37.14 ? C11 STU 602 A 1 HETATM 15 C C12 STU . . . E 5 -19.272 25.477 -25.141 1 32.15 ? C12 STU 602 A 1 HETATM 16 C C17 STU . . . E 5 -20.315 24.769 -25.748 1 35.09 ? C17 STU 602 A 1 HETATM 17 C C16 STU . . . E 5 -21.471 25.445 -26.152 1 34.55 ? C16 STU 602 A 1 HETATM 18 C C15 STU . . . E 5 -21.595 26.809 -25.966 1 41.77 ? C15 STU 602 A 1 HETATM 19 C C14 STU . . . E 5 -20.573 27.525 -25.368 1 43.9 ? C14 STU 602 A 1 HETATM 20 C C13 STU . . . E 5 -19.406 26.872 -24.949 1 33.02 ? C13 STU 602 A 1 HETATM 21 C C9 STU . . . E 5 -16.26 25.883 -23.688 1 49.51 ? C9 STU 602 A 1 HETATM 22 N N1 STU . . . E 5 -15.018 25.4 -23.078 1 50.08 ? N1 STU 602 A 1 HETATM 23 C C8 STU . . . E 5 -14.869 23.999 -23.394 1 38.24 ? C8 STU 602 A 1 HETATM 24 O O5 STU . . . E 5 -13.738 23.213 -23.129 1 34.61 ? O5 STU 602 A 1 HETATM 25 C C5 STU . . . E 5 -15.884 20.866 -24.424 1 41.58 ? C5 STU 602 A 1 HETATM 26 C C20 STU . . . E 5 -16.79 19.986 -25.003 1 39.22 ? C20 STU 602 A 1 HETATM 27 C C1 STU . . . E 5 -16.505 18.632 -25.114 1 35.9 ? C1 STU 602 A 1 HETATM 28 C C2 STU . . . E 5 -15.303 18.136 -24.651 1 37.17 ? C2 STU 602 A 1 HETATM 29 C C3 STU . . . E 5 -14.37 18.976 -24.072 1 39.69 ? C3 STU 602 A 1 HETATM 30 C C4 STU . . . E 5 -14.65 20.35 -23.952 1 39.86 ? C4 STU 602 A 1 HETATM 31 N N3 STU . . . E 5 -17.967 20.718 -25.404 1 39.94 ? N3 STU 602 A 1 HETATM 32 O O6 STU . . . E 5 -20.834 21.973 -23.969 1 50.89 ? O6 STU 602 A 1 HETATM 33 C C27 STU . . . E 5 -21.714 22.745 -23.131 1 59.34 ? C27 STU 602 A 1 HETATM 34 N N4 STU . . . E 5 -22.421 19.599 -24.43 1 31.37 ? N4 STU 602 A 1 HETATM 35 C C28 STU . . . E 5 -23.748 20.047 -24.81 1 30.06 ? C28 STU 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #