data_6C9M # _model_server_result.job_id TLqMdzOZJBhgLspbatPfWQ _model_server_result.datetime_utc '2025-03-20 20:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":902}' # _entry.id 6C9M # _exptl.entry_id 6C9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C9M _cell.length_a 95.11 _cell.length_b 171.83 _cell.length_c 178.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 D C ACE 1 D ACE 0 1_555 D N MET 2 D MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 195 n n C1 C6 IHP sing 196 n n C1 O11 IHP sing 197 n n C1 H1 IHP sing 198 n n C2 C3 IHP sing 199 n n C2 O12 IHP sing 200 n n C2 H2 IHP sing 201 n n C3 C4 IHP sing 202 n n C3 O13 IHP sing 203 n n C3 H3 IHP sing 204 n n C4 C5 IHP sing 205 n n C4 O14 IHP sing 206 n n C4 H4 IHP sing 207 n n C5 C6 IHP sing 208 n n C5 O15 IHP sing 209 n n C5 H5 IHP sing 210 n n C6 O16 IHP sing 211 n n C6 H6 IHP sing 212 n n O11 P1 IHP sing 213 n n P1 O21 IHP doub 214 n n P1 O31 IHP sing 215 n n P1 O41 IHP sing 216 n n O31 H31 IHP sing 217 n n O41 H41 IHP sing 218 n n O12 P2 IHP sing 219 n n P2 O22 IHP doub 220 n n P2 O32 IHP sing 221 n n P2 O42 IHP sing 222 n n O32 H32 IHP sing 223 n n O42 H42 IHP sing 224 n n O13 P3 IHP sing 225 n n P3 O23 IHP doub 226 n n P3 O33 IHP sing 227 n n P3 O43 IHP sing 228 n n O33 H33 IHP sing 229 n n O43 H43 IHP sing 230 n n O14 P4 IHP sing 231 n n P4 O24 IHP doub 232 n n P4 O34 IHP sing 233 n n P4 O44 IHP sing 234 n n O34 H34 IHP sing 235 n n O44 H44 IHP sing 236 n n O15 P5 IHP sing 237 n n P5 O25 IHP doub 238 n n P5 O35 IHP sing 239 n n P5 O45 IHP sing 240 n n O35 H35 IHP sing 241 n n O45 H45 IHP sing 242 n n O16 P6 IHP sing 243 n n P6 O26 IHP doub 244 n n P6 O36 IHP sing 245 n n P6 O46 IHP sing 246 n n O36 H36 IHP sing 247 n n O46 H46 IHP sing 248 n n # _atom_sites.entry_id 6C9M _atom_sites.fract_transf_matrix[1][1] 0.010514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IHP A 1 901 42 IHP IHP . F 4 1PE C 1 901 21 1PE 1PE . G 3 IHP C 1 902 39 IHP IHP . H 5 HOH A 1 1001 6 HOH HOH . H 5 HOH A 2 1002 5 HOH HOH . H 5 HOH A 3 1003 2 HOH HOH . H 5 HOH A 4 1004 7 HOH HOH . I 5 HOH B 1 301 1 HOH HOH . J 5 HOH C 1 1001 10 HOH HOH . J 5 HOH C 2 1002 11 HOH HOH . J 5 HOH C 3 1003 3 HOH HOH . J 5 HOH C 4 1004 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . G 3 58.499 56.433 -36.385 1 152.7 ? C1 IHP 902 C 1 HETATM 2 C C2 IHP . . . G 3 57.919 55.219 -37.199 1 158.95 ? C2 IHP 902 C 1 HETATM 3 C C3 IHP . . . G 3 58.482 54.858 -38.644 1 158.9 ? C3 IHP 902 C 1 HETATM 4 C C4 IHP . . . G 3 59.241 56.032 -39.359 1 153.96 ? C4 IHP 902 C 1 HETATM 5 C C5 IHP . . . G 3 59.246 57.277 -38.545 1 142.58 ? C5 IHP 902 C 1 HETATM 6 C C6 IHP . . . G 3 59.087 57.629 -37.134 1 142.26 ? C6 IHP 902 C 1 HETATM 7 O O11 IHP . . . G 3 57.36 57.226 -36.253 1 155.05 ? O11 IHP 902 C 1 HETATM 8 P P1 IHP . . . G 3 55.974 56.914 -35.451 1 165.24 ? P1 IHP 902 C 1 HETATM 9 O O21 IHP . . . G 3 56.04 55.639 -34.637 1 166.85 ? O21 IHP 902 C 1 HETATM 10 O O31 IHP . . . G 3 54.826 56.885 -36.439 1 164.82 ? O31 IHP 902 C 1 HETATM 11 O O41 IHP . . . G 3 55.86 58.125 -34.558 1 168.97 ? O41 IHP 902 C 1 HETATM 12 O O12 IHP . . . G 3 57.734 54.203 -36.217 1 163.98 ? O12 IHP 902 C 1 HETATM 13 P P2 IHP . . . G 3 57.452 52.574 -36.273 1 166.42 ? P2 IHP 902 C 1 HETATM 14 O O22 IHP . . . G 3 58.194 52.069 -35.056 1 168.52 ? O22 IHP 902 C 1 HETATM 15 O O32 IHP . . . G 3 55.979 52.264 -36.13 1 165.89 ? O32 IHP 902 C 1 HETATM 16 O O42 IHP . . . G 3 57.97 51.822 -37.473 1 167.53 ? O42 IHP 902 C 1 HETATM 17 O O13 IHP . . . G 3 59.032 53.579 -38.875 1 158.62 ? O13 IHP 902 C 1 HETATM 18 P P3 IHP . . . G 3 58.818 52.844 -40.361 1 159.21 ? P3 IHP 902 C 1 HETATM 19 O O23 IHP . . . G 3 59.884 51.775 -40.394 1 164.71 ? O23 IHP 902 C 1 HETATM 20 O O33 IHP . . . G 3 57.48 52.186 -40.65 1 157.75 ? O33 IHP 902 C 1 HETATM 21 O O43 IHP . . . G 3 59.058 53.807 -41.496 1 157.76 ? O43 IHP 902 C 1 HETATM 22 O O14 IHP . . . G 3 60.169 55.913 -40.441 1 156.37 ? O14 IHP 902 C 1 HETATM 23 P P4 IHP . . . G 3 61.715 55.427 -40.724 1 156.34 ? P4 IHP 902 C 1 HETATM 24 O O24 IHP . . . G 3 61.917 53.978 -40.377 1 160.57 ? O24 IHP 902 C 1 HETATM 25 O O34 IHP . . . G 3 61.83 55.492 -42.234 1 153.95 ? O34 IHP 902 C 1 HETATM 26 O O44 IHP . . . G 3 62.766 56.303 -40.068 1 155.2 ? O44 IHP 902 C 1 HETATM 27 O O15 IHP . . . G 3 58.475 58.252 -39.014 1 135.94 ? O15 IHP 902 C 1 HETATM 28 P P5 IHP . . . G 3 58.731 59.271 -40.237 1 102.64 ? P5 IHP 902 C 1 HETATM 29 O O25 IHP . . . G 3 60.194 59.396 -40.551 1 103.33 ? O25 IHP 902 C 1 HETATM 30 O O35 IHP . . . G 3 58.011 58.744 -41.442 1 109.38 ? O35 IHP 902 C 1 HETATM 31 O O45 IHP . . . G 3 58.106 60.553 -39.772 1 87.53 ? O45 IHP 902 C 1 HETATM 32 O O16 IHP . . . G 3 60.034 58.592 -36.689 1 129.93 ? O16 IHP 902 C 1 HETATM 33 P P6 IHP . . . G 3 60.291 59.22 -35.186 1 120.11 ? P6 IHP 902 C 1 HETATM 34 O O26 IHP . . . G 3 61.791 59.106 -35.102 1 123.82 ? O26 IHP 902 C 1 HETATM 35 O O36 IHP . . . G 3 59.885 60.659 -35.053 1 104.94 ? O36 IHP 902 C 1 HETATM 36 O O46 IHP . . . G 3 59.626 58.454 -34.068 1 126.9 ? O46 IHP 902 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #