data_6C9N
#
_model_server_result.job_id            nsc28VFYuap8BJ9NSNICEQ 
_model_server_result.datetime_utc      '2024-11-07 15:34:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c9n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    6C9N 
#
_exptl.entry_id    6C9N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C9N 
_cell.length_a            48.91 
_cell.length_b            48.91 
_cell.length_c            262.059 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C9N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 251 A ASP 251 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc2 A O THR 253 A THR 253 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc3 A O VAL 287 A VAL 287 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc4 A O SER 290 A SER 290 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc5 A O THR 291 A THR 291 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc6 B O ASP 251 B ASP 251 1_555 K NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc7 B O THR 253 B THR 253 1_555 K NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc8 B O VAL 287 B VAL 287 1_555 K NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc9 B O SER 290 B SER 290 1_555 K NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc10 B O THR 291 B THR 291 1_555 K NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6C9N 
_atom_sites.fract_transf_matrix[1][1]    0.020446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SGV A 1 401 3 SGV LIG . 
D 2 SGV A 1 402 5 SGV LIG . 
E 3 GOL A 1 403 1 GOL GOL . 
F 4 SO4 A 1 404 1 SO4 SO4 . 
G 5 NA A 1 405 1 NA NA . 
H 2 SGV B 1 401 4 SGV LIG . 
I 2 SGV B 1 402 6 SGV LIG . 
J 4 SO4 B 1 403 2 SO4 SO4 . 
K 5 NA B 1 404 2 NA NA . 
L 6 HOH A 1 501 75 HOH HOH . 
L 6 HOH A 2 502 141 HOH HOH . 
L 6 HOH A 3 503 90 HOH HOH . 
L 6 HOH A 4 504 164 HOH HOH . 
L 6 HOH A 5 505 17 HOH HOH . 
L 6 HOH A 6 506 92 HOH HOH . 
L 6 HOH A 7 507 21 HOH HOH . 
L 6 HOH A 8 508 215 HOH HOH . 
L 6 HOH A 9 509 76 HOH HOH . 
L 6 HOH A 10 510 93 HOH HOH . 
L 6 HOH A 11 511 38 HOH HOH . 
L 6 HOH A 12 512 67 HOH HOH . 
L 6 HOH A 13 513 58 HOH HOH . 
L 6 HOH A 14 514 33 HOH HOH . 
L 6 HOH A 15 515 152 HOH HOH . 
L 6 HOH A 16 516 24 HOH HOH . 
L 6 HOH A 17 517 193 HOH HOH . 
L 6 HOH A 18 518 197 HOH HOH . 
L 6 HOH A 19 519 50 HOH HOH . 
L 6 HOH A 20 520 45 HOH HOH . 
L 6 HOH A 21 521 42 HOH HOH . 
L 6 HOH A 22 522 12 HOH HOH . 
L 6 HOH A 23 523 167 HOH HOH . 
L 6 HOH A 24 524 73 HOH HOH . 
L 6 HOH A 25 525 223 HOH HOH . 
L 6 HOH A 26 526 245 HOH HOH . 
L 6 HOH A 27 527 9 HOH HOH . 
L 6 HOH A 28 528 29 HOH HOH . 
L 6 HOH A 29 529 113 HOH HOH . 
L 6 HOH A 30 530 139 HOH HOH . 
L 6 HOH A 31 531 10 HOH HOH . 
L 6 HOH A 32 532 155 HOH HOH . 
L 6 HOH A 33 533 2 HOH HOH . 
L 6 HOH A 34 534 107 HOH HOH . 
L 6 HOH A 35 535 180 HOH HOH . 
L 6 HOH A 36 536 199 HOH HOH . 
L 6 HOH A 37 537 195 HOH HOH . 
L 6 HOH A 38 538 202 HOH HOH . 
L 6 HOH A 39 539 49 HOH HOH . 
L 6 HOH A 40 540 178 HOH HOH . 
L 6 HOH A 41 541 211 HOH HOH . 
L 6 HOH A 42 542 123 HOH HOH . 
L 6 HOH A 43 543 187 HOH HOH . 
L 6 HOH A 44 544 153 HOH HOH . 
L 6 HOH A 45 545 91 HOH HOH . 
L 6 HOH A 46 546 104 HOH HOH . 
L 6 HOH A 47 547 8 HOH HOH . 
L 6 HOH A 48 548 110 HOH HOH . 
L 6 HOH A 49 549 166 HOH HOH . 
L 6 HOH A 50 550 169 HOH HOH . 
L 6 HOH A 51 551 81 HOH HOH . 
L 6 HOH A 52 552 138 HOH HOH . 
L 6 HOH A 53 553 22 HOH HOH . 
L 6 HOH A 54 554 11 HOH HOH . 
L 6 HOH A 55 555 61 HOH HOH . 
L 6 HOH A 56 556 207 HOH HOH . 
L 6 HOH A 57 557 225 HOH HOH . 
L 6 HOH A 58 558 46 HOH HOH . 
L 6 HOH A 59 559 103 HOH HOH . 
L 6 HOH A 60 560 70 HOH HOH . 
L 6 HOH A 61 561 149 HOH HOH . 
L 6 HOH A 62 562 20 HOH HOH . 
L 6 HOH A 63 563 142 HOH HOH . 
L 6 HOH A 64 564 69 HOH HOH . 
L 6 HOH A 65 565 19 HOH HOH . 
L 6 HOH A 66 566 148 HOH HOH . 
L 6 HOH A 67 567 116 HOH HOH . 
L 6 HOH A 68 568 59 HOH HOH . 
L 6 HOH A 69 569 117 HOH HOH . 
L 6 HOH A 70 570 130 HOH HOH . 
L 6 HOH A 71 571 175 HOH HOH . 
L 6 HOH A 72 572 95 HOH HOH . 
L 6 HOH A 73 573 7 HOH HOH . 
L 6 HOH A 74 574 137 HOH HOH . 
L 6 HOH A 75 575 32 HOH HOH . 
L 6 HOH A 76 576 163 HOH HOH . 
L 6 HOH A 77 577 26 HOH HOH . 
L 6 HOH A 78 578 48 HOH HOH . 
L 6 HOH A 79 579 84 HOH HOH . 
L 6 HOH A 80 580 237 HOH HOH . 
L 6 HOH A 81 581 129 HOH HOH . 
L 6 HOH A 82 582 240 HOH HOH . 
L 6 HOH A 83 583 5 HOH HOH . 
L 6 HOH A 84 584 200 HOH HOH . 
L 6 HOH A 85 585 235 HOH HOH . 
L 6 HOH A 86 586 78 HOH HOH . 
L 6 HOH A 87 587 217 HOH HOH . 
L 6 HOH A 88 588 87 HOH HOH . 
L 6 HOH A 89 589 196 HOH HOH . 
L 6 HOH A 90 590 212 HOH HOH . 
L 6 HOH A 91 591 190 HOH HOH . 
L 6 HOH A 92 592 108 HOH HOH . 
L 6 HOH A 93 593 83 HOH HOH . 
L 6 HOH A 94 594 198 HOH HOH . 
L 6 HOH A 95 595 184 HOH HOH . 
L 6 HOH A 96 596 40 HOH HOH . 
L 6 HOH A 97 597 161 HOH HOH . 
L 6 HOH A 98 598 242 HOH HOH . 
L 6 HOH A 99 599 205 HOH HOH . 
L 6 HOH A 100 600 106 HOH HOH . 
L 6 HOH A 101 601 182 HOH HOH . 
L 6 HOH A 102 602 174 HOH HOH . 
L 6 HOH A 103 603 250 HOH HOH . 
L 6 HOH A 104 604 160 HOH HOH . 
L 6 HOH A 105 605 158 HOH HOH . 
L 6 HOH A 106 606 228 HOH HOH . 
L 6 HOH A 107 607 249 HOH HOH . 
L 6 HOH A 108 608 171 HOH HOH . 
L 6 HOH A 109 609 143 HOH HOH . 
L 6 HOH A 110 610 165 HOH HOH . 
L 6 HOH A 111 611 57 HOH HOH . 
L 6 HOH A 112 612 244 HOH HOH . 
L 6 HOH A 113 613 145 HOH HOH . 
L 6 HOH A 114 614 111 HOH HOH . 
L 6 HOH A 115 615 216 HOH HOH . 
L 6 HOH A 116 616 214 HOH HOH . 
L 6 HOH A 117 617 126 HOH HOH . 
L 6 HOH A 118 618 135 HOH HOH . 
L 6 HOH A 119 619 232 HOH HOH . 
L 6 HOH A 120 620 219 HOH HOH . 
L 6 HOH A 121 621 208 HOH HOH . 
L 6 HOH A 122 622 121 HOH HOH . 
L 6 HOH A 123 623 231 HOH HOH . 
M 6 HOH B 1 501 233 HOH HOH . 
M 6 HOH B 2 502 100 HOH HOH . 
M 6 HOH B 3 503 96 HOH HOH . 
M 6 HOH B 4 504 65 HOH HOH . 
M 6 HOH B 5 505 97 HOH HOH . 
M 6 HOH B 6 506 35 HOH HOH . 
M 6 HOH B 7 507 140 HOH HOH . 
M 6 HOH B 8 508 44 HOH HOH . 
M 6 HOH B 9 509 101 HOH HOH . 
M 6 HOH B 10 510 203 HOH HOH . 
M 6 HOH B 11 511 236 HOH HOH . 
M 6 HOH B 12 512 62 HOH HOH . 
M 6 HOH B 13 513 99 HOH HOH . 
M 6 HOH B 14 514 234 HOH HOH . 
M 6 HOH B 15 515 168 HOH HOH . 
M 6 HOH B 16 516 85 HOH HOH . 
M 6 HOH B 17 517 102 HOH HOH . 
M 6 HOH B 18 518 27 HOH HOH . 
M 6 HOH B 19 519 53 HOH HOH . 
M 6 HOH B 20 520 79 HOH HOH . 
M 6 HOH B 21 521 132 HOH HOH . 
M 6 HOH B 22 522 43 HOH HOH . 
M 6 HOH B 23 523 125 HOH HOH . 
M 6 HOH B 24 524 209 HOH HOH . 
M 6 HOH B 25 525 37 HOH HOH . 
M 6 HOH B 26 526 60 HOH HOH . 
M 6 HOH B 27 527 112 HOH HOH . 
M 6 HOH B 28 528 80 HOH HOH . 
M 6 HOH B 29 529 134 HOH HOH . 
M 6 HOH B 30 530 51 HOH HOH . 
M 6 HOH B 31 531 6 HOH HOH . 
M 6 HOH B 32 532 230 HOH HOH . 
M 6 HOH B 33 533 82 HOH HOH . 
M 6 HOH B 34 534 18 HOH HOH . 
M 6 HOH B 35 535 31 HOH HOH . 
M 6 HOH B 36 536 66 HOH HOH . 
M 6 HOH B 37 537 124 HOH HOH . 
M 6 HOH B 38 538 201 HOH HOH . 
M 6 HOH B 39 539 47 HOH HOH . 
M 6 HOH B 40 540 246 HOH HOH . 
M 6 HOH B 41 541 133 HOH HOH . 
M 6 HOH B 42 542 16 HOH HOH . 
M 6 HOH B 43 543 52 HOH HOH . 
M 6 HOH B 44 544 120 HOH HOH . 
M 6 HOH B 45 545 159 HOH HOH . 
M 6 HOH B 46 546 206 HOH HOH . 
M 6 HOH B 47 547 25 HOH HOH . 
M 6 HOH B 48 548 105 HOH HOH . 
M 6 HOH B 49 549 218 HOH HOH . 
M 6 HOH B 50 550 15 HOH HOH . 
M 6 HOH B 51 551 146 HOH HOH . 
M 6 HOH B 52 552 74 HOH HOH . 
M 6 HOH B 53 553 28 HOH HOH . 
M 6 HOH B 54 554 39 HOH HOH . 
M 6 HOH B 55 555 13 HOH HOH . 
M 6 HOH B 56 556 243 HOH HOH . 
M 6 HOH B 57 557 1 HOH HOH . 
M 6 HOH B 58 558 154 HOH HOH . 
M 6 HOH B 59 559 72 HOH HOH . 
M 6 HOH B 60 560 86 HOH HOH . 
M 6 HOH B 61 561 220 HOH HOH . 
M 6 HOH B 62 562 131 HOH HOH . 
M 6 HOH B 63 563 150 HOH HOH . 
M 6 HOH B 64 564 157 HOH HOH . 
M 6 HOH B 65 565 109 HOH HOH . 
M 6 HOH B 66 566 4 HOH HOH . 
M 6 HOH B 67 567 94 HOH HOH . 
M 6 HOH B 68 568 98 HOH HOH . 
M 6 HOH B 69 569 119 HOH HOH . 
M 6 HOH B 70 570 115 HOH HOH . 
M 6 HOH B 71 571 194 HOH HOH . 
M 6 HOH B 72 572 177 HOH HOH . 
M 6 HOH B 73 573 55 HOH HOH . 
M 6 HOH B 74 574 89 HOH HOH . 
M 6 HOH B 75 575 77 HOH HOH . 
M 6 HOH B 76 576 23 HOH HOH . 
M 6 HOH B 77 577 14 HOH HOH . 
M 6 HOH B 78 578 34 HOH HOH . 
M 6 HOH B 79 579 41 HOH HOH . 
M 6 HOH B 80 580 127 HOH HOH . 
M 6 HOH B 81 581 63 HOH HOH . 
M 6 HOH B 82 582 172 HOH HOH . 
M 6 HOH B 83 583 64 HOH HOH . 
M 6 HOH B 84 584 30 HOH HOH . 
M 6 HOH B 85 585 3 HOH HOH . 
M 6 HOH B 86 586 88 HOH HOH . 
M 6 HOH B 87 587 71 HOH HOH . 
M 6 HOH B 88 588 114 HOH HOH . 
M 6 HOH B 89 589 173 HOH HOH . 
M 6 HOH B 90 590 56 HOH HOH . 
M 6 HOH B 91 591 136 HOH HOH . 
M 6 HOH B 92 592 248 HOH HOH . 
M 6 HOH B 93 593 128 HOH HOH . 
M 6 HOH B 94 594 144 HOH HOH . 
M 6 HOH B 95 595 251 HOH HOH . 
M 6 HOH B 96 596 170 HOH HOH . 
M 6 HOH B 97 597 213 HOH HOH . 
M 6 HOH B 98 598 151 HOH HOH . 
M 6 HOH B 99 599 147 HOH HOH . 
M 6 HOH B 100 600 191 HOH HOH . 
M 6 HOH B 101 601 181 HOH HOH . 
M 6 HOH B 102 602 179 HOH HOH . 
M 6 HOH B 103 603 204 HOH HOH . 
M 6 HOH B 104 604 210 HOH HOH . 
M 6 HOH B 105 605 54 HOH HOH . 
M 6 HOH B 106 606 122 HOH HOH . 
M 6 HOH B 107 607 224 HOH HOH . 
M 6 HOH B 108 608 238 HOH HOH . 
M 6 HOH B 109 609 239 HOH HOH . 
M 6 HOH B 110 610 188 HOH HOH . 
M 6 HOH B 111 611 185 HOH HOH . 
M 6 HOH B 112 612 247 HOH HOH . 
M 6 HOH B 113 613 176 HOH HOH . 
M 6 HOH B 114 614 156 HOH HOH . 
M 6 HOH B 115 615 229 HOH HOH . 
M 6 HOH B 116 616 118 HOH HOH . 
M 6 HOH B 117 617 189 HOH HOH . 
M 6 HOH B 118 618 186 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               15.202 
_atom_site.Cartn_y               8.539 
_atom_site.Cartn_z               16.3 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           405 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#