data_6C9O
#
_model_server_result.job_id            Ru0WodbCLFHofOBxI8p25g 
_model_server_result.datetime_utc      '2024-12-26 23:12:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c9o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    6C9O 
#
_exptl.entry_id    6C9O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.24 
_cell.angle_gamma         90 
_cell.entry_id            6C9O 
_cell.length_a            27.506 
_cell.length_b            36.497 
_cell.length_c            48.843 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C9O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 28 A LYS 28 1_555 A N MSE 29 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 29 A MSE 29 1_555 A N PHE 30 A PHE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 B C LYS 28 B LYS 28 1_555 B N MSE 29 B MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C MSE 29 B MSE 29 1_555 B N PHE 30 B PHE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 158 n n 
C1 H11 MPD sing 159 n n 
C1 H12 MPD sing 160 n n 
C1 H13 MPD sing 161 n n 
C2 O2 MPD sing 162 n n 
C2 CM MPD sing 163 n n 
C2 C3 MPD sing 164 n n 
O2 HO2 MPD sing 165 n n 
CM HM1 MPD sing 166 n n 
CM HM2 MPD sing 167 n n 
CM HM3 MPD sing 168 n n 
C3 C4 MPD sing 169 n n 
C3 H31 MPD sing 170 n n 
C3 H32 MPD sing 171 n n 
C4 O4 MPD sing 172 n n 
C4 C5 MPD sing 173 n n 
C4 H4 MPD sing 174 n n 
O4 HO4 MPD sing 175 n n 
C5 H51 MPD sing 176 n n 
C5 H52 MPD sing 177 n n 
C5 H53 MPD sing 178 n n 
#
_atom_sites.entry_id                     6C9O 
_atom_sites.fract_transf_matrix[1][1]    0.036356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005914 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020743 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 101 3 MPD MPD . 
D 2 MPD A 1 102 5 MPD MPD . 
E 2 MPD B 1 101 2 MPD MPD . 
F 2 MPD B 1 103 6 MPD MPD . 
G 3 HOH A 1 201 106 HOH HOH . 
G 3 HOH A 2 202 154 HOH HOH . 
G 3 HOH A 3 203 130 HOH HOH . 
G 3 HOH A 4 204 92 HOH HOH . 
G 3 HOH A 5 205 145 HOH HOH . 
G 3 HOH A 6 206 69 HOH HOH . 
G 3 HOH A 7 207 90 HOH HOH . 
G 3 HOH A 8 208 73 HOH HOH . 
G 3 HOH A 9 209 133 HOH HOH . 
G 3 HOH A 10 210 62 HOH HOH . 
G 3 HOH A 11 211 29 HOH HOH . 
G 3 HOH A 12 212 150 HOH HOH . 
G 3 HOH A 13 213 105 HOH HOH . 
G 3 HOH A 14 214 51 HOH HOH . 
G 3 HOH A 15 215 101 HOH HOH . 
G 3 HOH A 16 216 26 HOH HOH . 
G 3 HOH A 17 217 125 HOH HOH . 
G 3 HOH A 18 218 86 HOH HOH . 
G 3 HOH A 19 219 122 HOH HOH . 
G 3 HOH A 20 220 6 HOH HOH . 
G 3 HOH A 21 221 64 HOH HOH . 
G 3 HOH A 22 222 121 HOH HOH . 
G 3 HOH A 23 223 49 HOH HOH . 
G 3 HOH A 24 224 4 HOH HOH . 
G 3 HOH A 25 225 11 HOH HOH . 
G 3 HOH A 26 226 18 HOH HOH . 
G 3 HOH A 27 227 134 HOH HOH . 
G 3 HOH A 28 228 120 HOH HOH . 
G 3 HOH A 29 229 46 HOH HOH . 
G 3 HOH A 30 230 43 HOH HOH . 
G 3 HOH A 31 231 48 HOH HOH . 
G 3 HOH A 32 232 87 HOH HOH . 
G 3 HOH A 33 233 53 HOH HOH . 
G 3 HOH A 34 234 20 HOH HOH . 
G 3 HOH A 35 235 128 HOH HOH . 
G 3 HOH A 36 236 67 HOH HOH . 
G 3 HOH A 37 237 21 HOH HOH . 
G 3 HOH A 38 238 5 HOH HOH . 
G 3 HOH A 39 239 16 HOH HOH . 
G 3 HOH A 40 240 116 HOH HOH . 
G 3 HOH A 41 241 15 HOH HOH . 
G 3 HOH A 42 242 98 HOH HOH . 
G 3 HOH A 43 243 58 HOH HOH . 
G 3 HOH A 44 244 152 HOH HOH . 
G 3 HOH A 45 245 12 HOH HOH . 
G 3 HOH A 46 246 140 HOH HOH . 
G 3 HOH A 47 247 99 HOH HOH . 
G 3 HOH A 48 248 132 HOH HOH . 
G 3 HOH A 49 249 75 HOH HOH . 
G 3 HOH A 50 250 22 HOH HOH . 
G 3 HOH A 51 251 61 HOH HOH . 
G 3 HOH A 52 252 139 HOH HOH . 
G 3 HOH A 53 253 97 HOH HOH . 
G 3 HOH A 54 254 137 HOH HOH . 
G 3 HOH A 55 255 148 HOH HOH . 
G 3 HOH A 56 256 37 HOH HOH . 
G 3 HOH A 57 257 131 HOH HOH . 
G 3 HOH A 58 258 166 HOH HOH . 
G 3 HOH A 59 259 8 HOH HOH . 
G 3 HOH A 60 260 89 HOH HOH . 
G 3 HOH A 61 261 117 HOH HOH . 
G 3 HOH A 62 262 102 HOH HOH . 
G 3 HOH A 63 263 163 HOH HOH . 
G 3 HOH A 64 264 124 HOH HOH . 
G 3 HOH A 65 265 156 HOH HOH . 
G 3 HOH A 66 266 113 HOH HOH . 
G 3 HOH A 67 267 162 HOH HOH . 
G 3 HOH A 68 268 83 HOH HOH . 
G 3 HOH A 69 269 103 HOH HOH . 
G 3 HOH A 70 270 42 HOH HOH . 
G 3 HOH A 71 271 153 HOH HOH . 
G 3 HOH A 72 272 36 HOH HOH . 
G 3 HOH A 73 273 108 HOH HOH . 
G 3 HOH A 74 274 167 HOH HOH . 
G 3 HOH A 75 275 66 HOH HOH . 
G 3 HOH A 76 276 82 HOH HOH . 
G 3 HOH A 77 277 84 HOH HOH . 
H 3 HOH B 1 201 123 HOH HOH . 
H 3 HOH B 2 202 146 HOH HOH . 
H 3 HOH B 3 203 129 HOH HOH . 
H 3 HOH B 4 204 78 HOH HOH . 
H 3 HOH B 5 205 96 HOH HOH . 
H 3 HOH B 6 206 109 HOH HOH . 
H 3 HOH B 7 207 81 HOH HOH . 
H 3 HOH B 8 208 161 HOH HOH . 
H 3 HOH B 9 209 28 HOH HOH . 
H 3 HOH B 10 210 52 HOH HOH . 
H 3 HOH B 11 211 107 HOH HOH . 
H 3 HOH B 12 212 47 HOH HOH . 
H 3 HOH B 13 213 76 HOH HOH . 
H 3 HOH B 14 214 85 HOH HOH . 
H 3 HOH B 15 215 40 HOH HOH . 
H 3 HOH B 16 216 144 HOH HOH . 
H 3 HOH B 17 217 27 HOH HOH . 
H 3 HOH B 18 218 30 HOH HOH . 
H 3 HOH B 19 219 9 HOH HOH . 
H 3 HOH B 20 220 35 HOH HOH . 
H 3 HOH B 21 221 3 HOH HOH . 
H 3 HOH B 22 222 127 HOH HOH . 
H 3 HOH B 23 223 1 HOH HOH . 
H 3 HOH B 24 224 141 HOH HOH . 
H 3 HOH B 25 225 31 HOH HOH . 
H 3 HOH B 26 226 88 HOH HOH . 
H 3 HOH B 27 227 39 HOH HOH . 
H 3 HOH B 28 228 13 HOH HOH . 
H 3 HOH B 29 229 10 HOH HOH . 
H 3 HOH B 30 230 71 HOH HOH . 
H 3 HOH B 31 231 119 HOH HOH . 
H 3 HOH B 32 232 65 HOH HOH . 
H 3 HOH B 33 233 115 HOH HOH . 
H 3 HOH B 34 234 160 HOH HOH . 
H 3 HOH B 35 235 38 HOH HOH . 
H 3 HOH B 36 236 94 HOH HOH . 
H 3 HOH B 37 237 63 HOH HOH . 
H 3 HOH B 38 238 72 HOH HOH . 
H 3 HOH B 39 239 164 HOH HOH . 
H 3 HOH B 40 240 136 HOH HOH . 
H 3 HOH B 41 241 7 HOH HOH . 
H 3 HOH B 42 242 45 HOH HOH . 
H 3 HOH B 43 243 79 HOH HOH . 
H 3 HOH B 44 244 110 HOH HOH . 
H 3 HOH B 45 245 14 HOH HOH . 
H 3 HOH B 46 246 126 HOH HOH . 
H 3 HOH B 47 247 50 HOH HOH . 
H 3 HOH B 48 248 24 HOH HOH . 
H 3 HOH B 49 249 23 HOH HOH . 
H 3 HOH B 50 250 17 HOH HOH . 
H 3 HOH B 51 251 41 HOH HOH . 
H 3 HOH B 52 252 2 HOH HOH . 
H 3 HOH B 53 253 143 HOH HOH . 
H 3 HOH B 54 254 25 HOH HOH . 
H 3 HOH B 55 255 19 HOH HOH . 
H 3 HOH B 56 256 70 HOH HOH . 
H 3 HOH B 57 257 157 HOH HOH . 
H 3 HOH B 58 258 59 HOH HOH . 
H 3 HOH B 59 259 112 HOH HOH . 
H 3 HOH B 60 260 104 HOH HOH . 
H 3 HOH B 61 261 34 HOH HOH . 
H 3 HOH B 62 262 147 HOH HOH . 
H 3 HOH B 63 263 100 HOH HOH . 
H 3 HOH B 64 264 74 HOH HOH . 
H 3 HOH B 65 265 151 HOH HOH . 
H 3 HOH B 66 266 165 HOH HOH . 
H 3 HOH B 67 267 155 HOH HOH . 
H 3 HOH B 68 268 54 HOH HOH . 
H 3 HOH B 69 269 159 HOH HOH . 
H 3 HOH B 70 270 68 HOH HOH . 
H 3 HOH B 71 271 91 HOH HOH . 
H 3 HOH B 72 272 44 HOH HOH . 
H 3 HOH B 73 273 33 HOH HOH . 
H 3 HOH B 74 274 118 HOH HOH . 
H 3 HOH B 75 275 93 HOH HOH . 
H 3 HOH B 76 276 80 HOH HOH . 
H 3 HOH B 77 277 158 HOH HOH . 
H 3 HOH B 78 278 142 HOH HOH . 
H 3 HOH B 79 279 111 HOH HOH . 
H 3 HOH B 80 280 32 HOH HOH . 
H 3 HOH B 81 281 56 HOH HOH . 
H 3 HOH B 82 282 114 HOH HOH . 
H 3 HOH B 83 283 95 HOH HOH . 
H 3 HOH B 84 284 138 HOH HOH . 
H 3 HOH B 85 285 55 HOH HOH . 
H 3 HOH B 86 286 60 HOH HOH . 
H 3 HOH B 87 287 77 HOH HOH . 
H 3 HOH B 88 288 57 HOH HOH . 
H 3 HOH B 89 289 135 HOH HOH . 
H 3 HOH B 90 290 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 2 -10.796 -14.163 3.561 1 32.78 ? C1 MPD 101 B 1 
HETATM 2 C C2 MPD . . . E 2 -10.376 -15.055 4.726 1 28.84 ? C2 MPD 101 B 1 
HETATM 3 O O2 MPD . . . E 2 -10.757 -16.368 4.407 1 27.66 ? O2 MPD 101 B 1 
HETATM 4 C CM MPD . . . E 2 -8.858 -14.976 4.928 1 24.74 ? CM MPD 101 B 1 
HETATM 5 C C3 MPD . . . E 2 -11.107 -14.568 5.97 1 32.11 ? C3 MPD 101 B 1 
HETATM 6 C C4 MPD . . . E 2 -12.625 -14.615 5.772 1 33.34 ? C4 MPD 101 B 1 
HETATM 7 O O4 MPD . . . E 2 -13.001 -15.837 5.203 1 34.45 ? O4 MPD 101 B 1 
HETATM 8 C C5 MPD . . . E 2 -13.307 -14.443 7.131 1 33.75 ? C5 MPD 101 B 1 
HETATM 9 H H11 MPD . . . E 2 -11.71 -14.369 3.31 1 39.34 ? H11 MPD 101 B 1 
HETATM 10 H H12 MPD . . . E 2 -10.209 -14.321 2.805 1 39.34 ? H12 MPD 101 B 1 
HETATM 11 H H13 MPD . . . E 2 -10.736 -13.233 3.828 1 39.34 ? H13 MPD 101 B 1 
HETATM 12 H HO2 MPD . . . E 2 -11.204 -16.698 5.051 1 33.19 ? HO2 MPD 101 B 1 
HETATM 13 H HM1 MPD . . . E 2 -8.624 -14.104 5.283 1 29.69 ? HM1 MPD 101 B 1 
HETATM 14 H HM2 MPD . . . E 2 -8.412 -15.108 4.077 1 29.69 ? HM2 MPD 101 B 1 
HETATM 15 H HM3 MPD . . . E 2 -8.578 -15.665 5.551 1 29.69 ? HM3 MPD 101 B 1 
HETATM 16 H H31 MPD . . . E 2 -10.868 -15.135 6.72 1 38.53 ? H31 MPD 101 B 1 
HETATM 17 H H32 MPD . . . E 2 -10.84 -13.655 6.157 1 38.53 ? H32 MPD 101 B 1 
HETATM 18 H H4 MPD . . . E 2 -12.895 -13.901 5.174 1 40.02 ? H4 MPD 101 B 1 
HETATM 19 H HO4 MPD . . . E 2 -13.779 -16.048 5.473 1 41.34 ? HO4 MPD 101 B 1 
HETATM 20 H H51 MPD . . . E 2 -13.625 -15.304 7.445 1 40.5 ? H51 MPD 101 B 1 
HETATM 21 H H52 MPD . . . E 2 -14.057 -13.834 7.042 1 40.5 ? H52 MPD 101 B 1 
HETATM 22 H H53 MPD . . . E 2 -12.671 -14.081 7.768 1 40.5 ? H53 MPD 101 B 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#