data_6C9W # _model_server_result.job_id Sryo0BOcEjx8mXWy0D1nuA _model_server_result.datetime_utc '2024-12-11 22:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6C9W # _exptl.entry_id 6C9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.249 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl alpha-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C9W _cell.length_a 153.55 _cell.length_b 153.55 _cell.length_c 193.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 95 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H15 N O8' _chem_comp.formula_weight 301.249 _chem_comp.id 9PG _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl alpha-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '4-nitrophenyl alpha-D-galactoside;4-nitrophenyl D-galactoside;4-nitrophenyl galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 9PG sing 1 n n O2 C2 9PG sing 2 n n C3 C2 9PG sing 3 n n C3 C4 9PG sing 4 n n C2 C1 9PG sing 5 n n C4 O4 9PG sing 6 n n C4 C5 9PG sing 7 n n O1 C1 9PG sing 8 n n O1 C12 9PG sing 9 n n C1 O5 9PG sing 10 n n C11 C12 9PG doub 11 n y C11 C10 9PG sing 12 n y C5 O5 9PG sing 13 n n C5 C6 9PG sing 14 n n C12 C13 9PG sing 15 n y C10 C9 9PG doub 16 n y C13 C14 9PG doub 17 n y O6 C6 9PG sing 18 n n C9 C14 9PG sing 19 n y C9 N 9PG sing 20 n n N O7 9PG doub 21 n n N O8 9PG sing 22 n n C6 H61 9PG sing 23 n n C6 H62 9PG sing 24 n n C5 H5 9PG sing 25 n n C4 H4 9PG sing 26 n n C3 H3 9PG sing 27 n n C2 H2 9PG sing 28 n n C1 H1 9PG sing 29 n n C14 H8 9PG sing 30 n n C13 H9 9PG sing 31 n n C11 H10 9PG sing 32 n n C10 H11 9PG sing 33 n n O2 HO2 9PG sing 34 n n O3 HO3 9PG sing 35 n n O4 HO4 9PG sing 36 n n O6 HO6 9PG sing 37 n n # _atom_sites.entry_id 6C9W _atom_sites.fract_transf_matrix[1][1] 0.006513 _atom_sites.fract_transf_matrix[1][2] 0.00376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9PG A 1 501 501 9PG 9PG . D 4 BNG A 1 502 502 BNG BNG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 9PG . . . C 3 -19.733 -61.79 -15.121 1 115.62 ? C6 9PG 501 A 1 HETATM 2 C C5 9PG . . . C 3 -18.425 -61.137 -14.672 1 102.03 ? C5 9PG 501 A 1 HETATM 3 C C4 9PG . . . C 3 -17.435 -62.176 -14.131 1 108.36 ? C4 9PG 501 A 1 HETATM 4 C C3 9PG . . . C 3 -16.243 -61.501 -13.477 1 109.73 ? C3 9PG 501 A 1 HETATM 5 C C2 9PG . . . C 3 -16.772 -60.592 -12.388 1 121 ? C2 9PG 501 A 1 HETATM 6 C C1 9PG . . . C 3 -17.673 -59.53 -12.991 1 122.28 ? C1 9PG 501 A 1 HETATM 7 O O8 9PG . . . C 3 -16.694 -52.814 -15.878 1 136.89 ? O8 9PG 501 A 1 HETATM 8 N N 9PG . . . C 3 -17.309 -53.287 -14.936 1 135.91 ? N 9PG 501 A 1 HETATM 9 O O7 9PG . . . C 3 -18.012 -52.575 -14.237 1 134.85 ? O7 9PG 501 A 1 HETATM 10 C C9 9PG . . . C 3 -17.208 -54.651 -14.654 1 119.09 ? C9 9PG 501 A 1 HETATM 11 C C14 9PG . . . C 3 -17.832 -55.171 -13.529 1 128.09 ? C14 9PG 501 A 1 HETATM 12 C C13 9PG . . . C 3 -17.734 -56.525 -13.241 1 139.34 ? C13 9PG 501 A 1 HETATM 13 C C12 9PG . . . C 3 -17.021 -57.369 -14.093 1 125.22 ? C12 9PG 501 A 1 HETATM 14 C C11 9PG . . . C 3 -16.389 -56.84 -15.216 1 111.66 ? C11 9PG 501 A 1 HETATM 15 C C10 9PG . . . C 3 -16.485 -55.486 -15.497 1 109.35 ? C10 9PG 501 A 1 HETATM 16 O O1 9PG . . . C 3 -16.872 -58.715 -13.849 1 111.74 ? O1 9PG 501 A 1 HETATM 17 O O2 9PG . . . C 3 -15.683 -59.966 -11.702 1 108.37 ? O2 9PG 501 A 1 HETATM 18 O O3 9PG . . . C 3 -15.359 -62.465 -12.898 1 121.51 ? O3 9PG 501 A 1 HETATM 19 O O4 9PG . . . C 3 -18.046 -63.042 -13.155 1 129.67 ? O4 9PG 501 A 1 HETATM 20 O O5 9PG . . . C 3 -18.753 -60.12 -13.722 1 120.87 ? O5 9PG 501 A 1 HETATM 21 O O6 9PG . . . C 3 -20.59 -62.1 -14.013 1 128.02 ? O6 9PG 501 A 1 HETATM 22 H H61 9PG . . . C 3 -20.202 -61.187 -15.718 1 110.92 ? H61 9PG 501 A 1 HETATM 23 H H62 9PG . . . C 3 -19.529 -62.612 -15.591 1 110.92 ? H62 9PG 501 A 1 HETATM 24 H H5 9PG . . . C 3 -18.018 -60.708 -15.441 1 97.33 ? H5 9PG 501 A 1 HETATM 25 H H4 9PG . . . C 3 -17.116 -62.713 -14.873 1 103.66 ? H4 9PG 501 A 1 HETATM 26 H H3 9PG . . . C 3 -15.767 -60.972 -14.136 1 105.03 ? H3 9PG 501 A 1 HETATM 27 H H2 9PG . . . C 3 -17.286 -61.121 -11.758 1 116.3 ? H2 9PG 501 A 1 HETATM 28 H H1 9PG . . . C 3 -18.039 -58.991 -12.273 1 117.58 ? H1 9PG 501 A 1 HETATM 29 H H8 9PG . . . C 3 -18.314 -54.61 -12.966 1 123.39 ? H8 9PG 501 A 1 HETATM 30 H H9 9PG . . . C 3 -18.153 -56.871 -12.487 1 134.64 ? H9 9PG 501 A 1 HETATM 31 H H10 9PG . . . C 3 -15.904 -57.397 -15.781 1 106.96 ? H10 9PG 501 A 1 HETATM 32 H H11 9PG . . . C 3 -16.069 -55.137 -16.252 1 104.65 ? H11 9PG 501 A 1 HETATM 33 H HO2 9PG . . . C 3 -15.808 -60.017 -10.863 1 103.67 ? HO2 9PG 501 A 1 HETATM 34 H HO3 9PG . . . C 3 -14.782 -62.703 -13.475 1 116.81 ? HO3 9PG 501 A 1 HETATM 35 H HO4 9PG . . . C 3 -17.848 -63.85 -13.328 1 124.97 ? HO4 9PG 501 A 1 HETATM 36 H HO6 9PG . . . C 3 -21.12 -62.727 -14.232 1 123.32 ? HO6 9PG 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 578 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 36 #