data_6CA6 # _model_server_result.job_id 4HxD2lp51MTPeNf-U1Gerw _model_server_result.datetime_utc '2025-07-15 12:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ca6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 6CA6 # _exptl.entry_id 6CA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CA6 _cell.length_a 96.776 _cell.length_b 98.132 _cell.length_c 100.563 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,J,K 1 1 C,D,E,F,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf4 B SG CYS 161 H CYS 140 1_555 B SG CYS 217 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 23 A CYS 23 1_555 C SG CYS 89 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 134 A CYS 134 1_555 C SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf8 D SG CYS 161 B CYS 140 1_555 D SG CYS 217 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 B C ASP 111 H ASP 100 1_555 B N TYS 112 H TYS 100 1_555 E ? ? F ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C TYS 112 H TYS 100 1_555 B N SER 113 H SER 100 1_555 F ? ? G ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 D C ASP 111 B ASP 100 1_555 D N TYS 112 B TYS 100 1_555 E ? ? F ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C TYS 112 B TYS 100 1_555 D N SER 113 B SER 100 1_555 F ? ? G ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6CA6 _atom_sites.fract_transf_matrix[1][1] 0.010333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PEG A 1 301 181 PEG PEG . F 4 GOL A 1 302 182 GOL GOL . G 4 GOL B 1 301 183 GOL GOL . H 4 GOL B 1 302 184 GOL GOL . I 4 GOL B 1 303 185 GOL GOL . J 5 HOH L 1 301 176 HOH HOH . J 5 HOH L 2 302 125 HOH HOH . J 5 HOH L 3 303 154 HOH HOH . J 5 HOH L 4 304 131 HOH HOH . J 5 HOH L 5 305 10 HOH HOH . J 5 HOH L 6 306 34 HOH HOH . J 5 HOH L 7 307 29 HOH HOH . J 5 HOH L 8 308 25 HOH HOH . J 5 HOH L 9 309 143 HOH HOH . J 5 HOH L 10 310 20 HOH HOH . J 5 HOH L 11 311 13 HOH HOH . J 5 HOH L 12 312 43 HOH HOH . J 5 HOH L 13 313 132 HOH HOH . J 5 HOH L 14 314 84 HOH HOH . J 5 HOH L 15 315 50 HOH HOH . J 5 HOH L 16 316 15 HOH HOH . J 5 HOH L 17 317 5 HOH HOH . J 5 HOH L 18 318 151 HOH HOH . J 5 HOH L 19 319 66 HOH HOH . J 5 HOH L 20 320 91 HOH HOH . J 5 HOH L 21 321 93 HOH HOH . J 5 HOH L 22 322 97 HOH HOH . J 5 HOH L 23 323 127 HOH HOH . J 5 HOH L 24 324 174 HOH HOH . J 5 HOH L 25 325 70 HOH HOH . J 5 HOH L 26 326 109 HOH HOH . J 5 HOH L 27 327 65 HOH HOH . J 5 HOH L 28 328 77 HOH HOH . J 5 HOH L 29 329 107 HOH HOH . J 5 HOH L 30 330 6 HOH HOH . J 5 HOH L 31 331 33 HOH HOH . J 5 HOH L 32 332 44 HOH HOH . J 5 HOH L 33 333 4 HOH HOH . J 5 HOH L 34 334 148 HOH HOH . J 5 HOH L 35 335 19 HOH HOH . J 5 HOH L 36 336 113 HOH HOH . J 5 HOH L 37 337 36 HOH HOH . J 5 HOH L 38 338 121 HOH HOH . J 5 HOH L 39 339 103 HOH HOH . J 5 HOH L 40 340 160 HOH HOH . J 5 HOH L 41 341 9 HOH HOH . J 5 HOH L 42 342 158 HOH HOH . J 5 HOH L 43 343 124 HOH HOH . J 5 HOH L 44 344 152 HOH HOH . J 5 HOH L 45 345 157 HOH HOH . J 5 HOH L 46 346 142 HOH HOH . J 5 HOH L 47 347 166 HOH HOH . K 5 HOH H 1 301 140 HOH HOH . K 5 HOH H 2 302 120 HOH HOH . K 5 HOH H 3 303 37 HOH HOH . K 5 HOH H 4 304 88 HOH HOH . K 5 HOH H 5 305 126 HOH HOH . K 5 HOH H 6 306 63 HOH HOH . K 5 HOH H 7 307 3 HOH HOH . K 5 HOH H 8 308 23 HOH HOH . K 5 HOH H 9 309 145 HOH HOH . K 5 HOH H 10 310 167 HOH HOH . K 5 HOH H 11 311 164 HOH HOH . K 5 HOH H 12 312 170 HOH HOH . K 5 HOH H 13 313 57 HOH HOH . K 5 HOH H 14 314 96 HOH HOH . K 5 HOH H 15 315 82 HOH HOH . K 5 HOH H 16 316 108 HOH HOH . K 5 HOH H 17 317 163 HOH HOH . K 5 HOH H 18 318 139 HOH HOH . K 5 HOH H 19 319 114 HOH HOH . K 5 HOH H 20 320 112 HOH HOH . K 5 HOH H 21 321 177 HOH HOH . K 5 HOH H 22 322 179 HOH HOH . K 5 HOH H 23 323 135 HOH HOH . K 5 HOH H 24 324 116 HOH HOH . K 5 HOH H 25 325 2 HOH HOH . K 5 HOH H 26 326 67 HOH HOH . K 5 HOH H 27 327 7 HOH HOH . K 5 HOH H 28 328 40 HOH HOH . K 5 HOH H 29 329 90 HOH HOH . K 5 HOH H 30 330 159 HOH HOH . K 5 HOH H 31 331 56 HOH HOH . K 5 HOH H 32 332 35 HOH HOH . K 5 HOH H 33 333 175 HOH HOH . K 5 HOH H 34 334 16 HOH HOH . K 5 HOH H 35 335 94 HOH HOH . K 5 HOH H 36 336 79 HOH HOH . K 5 HOH H 37 337 130 HOH HOH . K 5 HOH H 38 338 52 HOH HOH . K 5 HOH H 39 339 161 HOH HOH . K 5 HOH H 40 340 162 HOH HOH . K 5 HOH H 41 341 171 HOH HOH . K 5 HOH H 42 342 27 HOH HOH . K 5 HOH H 43 343 14 HOH HOH . K 5 HOH H 44 344 74 HOH HOH . K 5 HOH H 45 345 1 HOH HOH . K 5 HOH H 46 346 111 HOH HOH . K 5 HOH H 47 347 39 HOH HOH . K 5 HOH H 48 348 173 HOH HOH . K 5 HOH H 49 349 85 HOH HOH . K 5 HOH H 50 350 133 HOH HOH . K 5 HOH H 51 351 53 HOH HOH . K 5 HOH H 52 352 18 HOH HOH . K 5 HOH H 53 353 115 HOH HOH . K 5 HOH H 54 354 24 HOH HOH . K 5 HOH H 55 355 68 HOH HOH . K 5 HOH H 56 356 110 HOH HOH . K 5 HOH H 57 357 78 HOH HOH . K 5 HOH H 58 358 144 HOH HOH . K 5 HOH H 59 359 92 HOH HOH . K 5 HOH H 60 360 156 HOH HOH . K 5 HOH H 61 361 168 HOH HOH . K 5 HOH H 62 362 136 HOH HOH . K 5 HOH H 63 363 141 HOH HOH . K 5 HOH H 64 364 178 HOH HOH . K 5 HOH H 65 365 165 HOH HOH . K 5 HOH H 66 366 155 HOH HOH . K 5 HOH H 67 367 169 HOH HOH . K 5 HOH H 68 368 137 HOH HOH . L 5 HOH A 1 401 128 HOH HOH . L 5 HOH A 2 402 129 HOH HOH . L 5 HOH A 3 403 28 HOH HOH . L 5 HOH A 4 404 87 HOH HOH . L 5 HOH A 5 405 11 HOH HOH . L 5 HOH A 6 406 22 HOH HOH . L 5 HOH A 7 407 98 HOH HOH . L 5 HOH A 8 408 71 HOH HOH . L 5 HOH A 9 409 104 HOH HOH . L 5 HOH A 10 410 31 HOH HOH . L 5 HOH A 11 411 75 HOH HOH . L 5 HOH A 12 412 102 HOH HOH . L 5 HOH A 13 413 99 HOH HOH . L 5 HOH A 14 414 117 HOH HOH . L 5 HOH A 15 415 105 HOH HOH . L 5 HOH A 16 416 46 HOH HOH . L 5 HOH A 17 417 180 HOH HOH . L 5 HOH A 18 418 153 HOH HOH . M 5 HOH B 1 401 48 HOH HOH . M 5 HOH B 2 402 146 HOH HOH . M 5 HOH B 3 403 41 HOH HOH . M 5 HOH B 4 404 134 HOH HOH . M 5 HOH B 5 405 54 HOH HOH . M 5 HOH B 6 406 59 HOH HOH . M 5 HOH B 7 407 58 HOH HOH . M 5 HOH B 8 408 118 HOH HOH . M 5 HOH B 9 409 150 HOH HOH . M 5 HOH B 10 410 149 HOH HOH . M 5 HOH B 11 411 147 HOH HOH . M 5 HOH B 12 412 83 HOH HOH . M 5 HOH B 13 413 21 HOH HOH . M 5 HOH B 14 414 17 HOH HOH . M 5 HOH B 15 415 76 HOH HOH . M 5 HOH B 16 416 42 HOH HOH . M 5 HOH B 17 417 26 HOH HOH . M 5 HOH B 18 418 60 HOH HOH . M 5 HOH B 19 419 100 HOH HOH . M 5 HOH B 20 420 80 HOH HOH . M 5 HOH B 21 421 61 HOH HOH . M 5 HOH B 22 422 119 HOH HOH . M 5 HOH B 23 423 172 HOH HOH . M 5 HOH B 24 424 32 HOH HOH . M 5 HOH B 25 425 81 HOH HOH . M 5 HOH B 26 426 55 HOH HOH . M 5 HOH B 27 427 12 HOH HOH . M 5 HOH B 28 428 64 HOH HOH . M 5 HOH B 29 429 95 HOH HOH . M 5 HOH B 30 430 69 HOH HOH . M 5 HOH B 31 431 73 HOH HOH . M 5 HOH B 32 432 8 HOH HOH . M 5 HOH B 33 433 89 HOH HOH . M 5 HOH B 34 434 38 HOH HOH . M 5 HOH B 35 435 138 HOH HOH . M 5 HOH B 36 436 86 HOH HOH . M 5 HOH B 37 437 30 HOH HOH . M 5 HOH B 38 438 106 HOH HOH . M 5 HOH B 39 439 72 HOH HOH . M 5 HOH B 40 440 51 HOH HOH . M 5 HOH B 41 441 47 HOH HOH . M 5 HOH B 42 442 101 HOH HOH . M 5 HOH B 43 443 62 HOH HOH . M 5 HOH B 44 444 49 HOH HOH . M 5 HOH B 45 445 45 HOH HOH . M 5 HOH B 46 446 122 HOH HOH . M 5 HOH B 47 447 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 127.445 138.822 80.581 1 53.1 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . H 4 128.741 138.492 80.968 1 53.1 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . H 4 126.464 138.115 81.534 1 52.62 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . H 4 126.274 136.779 81.183 1 52.35 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . H 4 125.144 138.949 81.455 1 52.06 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . H 4 125.455 140.254 81.05 1 51.28 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #