data_6CBG # _model_server_result.job_id Rf0Jpv7JSLGgXHrXveB4rA _model_server_result.datetime_utc '2024-11-05 04:02:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":205}' # _entry.id 6CBG # _exptl.entry_id 6CBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CBG _cell.length_a 68.331 _cell.length_b 68.258 _cell.length_c 86.753 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 M N N ? 3 R N N ? 3 S N N ? 3 T N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 6CBG _atom_sites.fract_transf_matrix[1][1] 0.014635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 126 SO4 SO4 . E 3 GOL A 1 202 141 GOL GOL . F 3 GOL A 1 203 145 GOL GOL . G 3 GOL A 1 204 146 GOL GOL . H 3 GOL A 1 205 148 GOL GOL . I 3 GOL B 1 201 149 GOL GOL . J 2 SO4 B 1 202 121 SO4 SO4 . K 2 SO4 B 1 203 124 SO4 SO4 . L 4 EWG B 1 204 130 EWG MIF . M 3 GOL B 1 205 142 GOL GOL . N 2 SO4 C 1 201 122 SO4 SO4 . O 2 SO4 C 1 202 123 SO4 SO4 . P 2 SO4 C 1 203 129 SO4 SO4 . Q 4 EWG C 1 204 131 EWG MIF . R 3 GOL C 1 205 143 GOL GOL . S 3 GOL C 1 206 144 GOL GOL . T 3 GOL C 1 207 147 GOL GOL . U 5 HOH A 1 301 108 HOH HOH . U 5 HOH A 2 302 15 HOH HOH . U 5 HOH A 3 303 144 HOH HOH . U 5 HOH A 4 304 82 HOH HOH . U 5 HOH A 5 305 137 HOH HOH . U 5 HOH A 6 306 24 HOH HOH . U 5 HOH A 7 307 83 HOH HOH . U 5 HOH A 8 308 70 HOH HOH . U 5 HOH A 9 309 138 HOH HOH . U 5 HOH A 10 310 31 HOH HOH . U 5 HOH A 11 311 47 HOH HOH . U 5 HOH A 12 312 69 HOH HOH . U 5 HOH A 13 313 111 HOH HOH . U 5 HOH A 14 314 139 HOH HOH . U 5 HOH A 15 315 21 HOH HOH . U 5 HOH A 16 316 66 HOH HOH . U 5 HOH A 17 317 2 HOH HOH . U 5 HOH A 18 318 110 HOH HOH . U 5 HOH A 19 319 85 HOH HOH . U 5 HOH A 20 320 13 HOH HOH . U 5 HOH A 21 321 52 HOH HOH . U 5 HOH A 22 322 95 HOH HOH . U 5 HOH A 23 323 115 HOH HOH . U 5 HOH A 24 324 125 HOH HOH . U 5 HOH A 25 325 122 HOH HOH . U 5 HOH A 26 326 4 HOH HOH . U 5 HOH A 27 327 113 HOH HOH . U 5 HOH A 28 328 28 HOH HOH . U 5 HOH A 29 329 150 HOH HOH . U 5 HOH A 30 330 104 HOH HOH . U 5 HOH A 31 331 57 HOH HOH . U 5 HOH A 32 332 58 HOH HOH . U 5 HOH A 33 333 88 HOH HOH . U 5 HOH A 34 334 98 HOH HOH . U 5 HOH A 35 335 89 HOH HOH . U 5 HOH A 36 336 17 HOH HOH . U 5 HOH A 37 337 19 HOH HOH . U 5 HOH A 38 338 105 HOH HOH . U 5 HOH A 39 339 22 HOH HOH . U 5 HOH A 40 340 55 HOH HOH . U 5 HOH A 41 341 71 HOH HOH . U 5 HOH A 42 342 143 HOH HOH . U 5 HOH A 43 343 102 HOH HOH . U 5 HOH A 44 344 30 HOH HOH . U 5 HOH A 45 345 46 HOH HOH . U 5 HOH A 46 346 117 HOH HOH . U 5 HOH A 47 347 149 HOH HOH . U 5 HOH A 48 348 90 HOH HOH . U 5 HOH A 49 349 79 HOH HOH . U 5 HOH A 50 350 23 HOH HOH . U 5 HOH A 51 351 101 HOH HOH . U 5 HOH A 52 352 129 HOH HOH . V 5 HOH B 1 301 94 HOH HOH . V 5 HOH B 2 302 121 HOH HOH . V 5 HOH B 3 303 146 HOH HOH . V 5 HOH B 4 304 77 HOH HOH . V 5 HOH B 5 305 18 HOH HOH . V 5 HOH B 6 306 91 HOH HOH . V 5 HOH B 7 307 25 HOH HOH . V 5 HOH B 8 308 54 HOH HOH . V 5 HOH B 9 309 14 HOH HOH . V 5 HOH B 10 310 93 HOH HOH . V 5 HOH B 11 311 39 HOH HOH . V 5 HOH B 12 312 5 HOH HOH . V 5 HOH B 13 313 11 HOH HOH . V 5 HOH B 14 314 84 HOH HOH . V 5 HOH B 15 315 34 HOH HOH . V 5 HOH B 16 316 62 HOH HOH . V 5 HOH B 17 317 114 HOH HOH . V 5 HOH B 18 318 12 HOH HOH . V 5 HOH B 19 319 33 HOH HOH . V 5 HOH B 20 320 20 HOH HOH . V 5 HOH B 21 321 132 HOH HOH . V 5 HOH B 22 322 3 HOH HOH . V 5 HOH B 23 323 141 HOH HOH . V 5 HOH B 24 324 140 HOH HOH . V 5 HOH B 25 325 49 HOH HOH . V 5 HOH B 26 326 72 HOH HOH . V 5 HOH B 27 327 80 HOH HOH . V 5 HOH B 28 328 78 HOH HOH . V 5 HOH B 29 329 76 HOH HOH . V 5 HOH B 30 330 73 HOH HOH . V 5 HOH B 31 331 6 HOH HOH . V 5 HOH B 32 332 97 HOH HOH . V 5 HOH B 33 333 67 HOH HOH . V 5 HOH B 34 334 16 HOH HOH . V 5 HOH B 35 335 41 HOH HOH . V 5 HOH B 36 336 136 HOH HOH . V 5 HOH B 37 337 116 HOH HOH . V 5 HOH B 38 338 81 HOH HOH . V 5 HOH B 39 339 135 HOH HOH . V 5 HOH B 40 340 36 HOH HOH . V 5 HOH B 41 341 118 HOH HOH . V 5 HOH B 42 342 120 HOH HOH . V 5 HOH B 43 343 99 HOH HOH . V 5 HOH B 44 344 130 HOH HOH . V 5 HOH B 45 345 131 HOH HOH . V 5 HOH B 46 346 147 HOH HOH . V 5 HOH B 47 347 134 HOH HOH . V 5 HOH B 48 348 59 HOH HOH . W 5 HOH C 1 301 126 HOH HOH . W 5 HOH C 2 302 61 HOH HOH . W 5 HOH C 3 303 86 HOH HOH . W 5 HOH C 4 304 9 HOH HOH . W 5 HOH C 5 305 7 HOH HOH . W 5 HOH C 6 306 128 HOH HOH . W 5 HOH C 7 307 63 HOH HOH . W 5 HOH C 8 308 53 HOH HOH . W 5 HOH C 9 309 37 HOH HOH . W 5 HOH C 10 310 106 HOH HOH . W 5 HOH C 11 311 112 HOH HOH . W 5 HOH C 12 312 145 HOH HOH . W 5 HOH C 13 313 148 HOH HOH . W 5 HOH C 14 314 96 HOH HOH . W 5 HOH C 15 315 42 HOH HOH . W 5 HOH C 16 316 127 HOH HOH . W 5 HOH C 17 317 29 HOH HOH . W 5 HOH C 18 318 123 HOH HOH . W 5 HOH C 19 319 35 HOH HOH . W 5 HOH C 20 320 109 HOH HOH . W 5 HOH C 21 321 107 HOH HOH . W 5 HOH C 22 322 8 HOH HOH . W 5 HOH C 23 323 1 HOH HOH . W 5 HOH C 24 324 68 HOH HOH . W 5 HOH C 25 325 133 HOH HOH . W 5 HOH C 26 326 26 HOH HOH . W 5 HOH C 27 327 40 HOH HOH . W 5 HOH C 28 328 100 HOH HOH . W 5 HOH C 29 329 103 HOH HOH . W 5 HOH C 30 330 60 HOH HOH . W 5 HOH C 31 331 92 HOH HOH . W 5 HOH C 32 332 65 HOH HOH . W 5 HOH C 33 333 10 HOH HOH . W 5 HOH C 34 334 32 HOH HOH . W 5 HOH C 35 335 50 HOH HOH . W 5 HOH C 36 336 142 HOH HOH . W 5 HOH C 37 337 119 HOH HOH . W 5 HOH C 38 338 51 HOH HOH . W 5 HOH C 39 339 87 HOH HOH . W 5 HOH C 40 340 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . R 3 -31.458 11.285 17.367 1 28.6 ? C1 GOL 205 C 1 HETATM 2 O O1 GOL . . . R 3 -31.039 10.877 18.677 1 26.49 ? O1 GOL 205 C 1 HETATM 3 C C2 GOL . . . R 3 -31.355 12.804 17.193 1 29.04 ? C2 GOL 205 C 1 HETATM 4 O O2 GOL . . . R 3 -29.986 13.241 17.041 1 25.41 ? O2 GOL 205 C 1 HETATM 5 C C3 GOL . . . R 3 -32.213 13.228 16.001 1 30.53 ? C3 GOL 205 C 1 HETATM 6 O O3 GOL . . . R 3 -31.415 13.484 14.846 1 32.27 ? O3 GOL 205 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #