data_6CBY # _model_server_result.job_id SJ0cB_aUHSF0ycfviy6WVA _model_server_result.datetime_utc '2024-11-14 06:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1004}' # _entry.id 6CBY # _exptl.entry_id 6CBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.666 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.42 _cell.angle_gamma 90 _cell.entry_id 6CBY _cell.length_a 57.819 _cell.length_b 117.579 _cell.length_c 65.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 53 A CYS 52 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A SG CYS 56 A CYS 55 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc3 A SG CYS 66 A CYS 65 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 A SG CYS 69 A CYS 68 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc5 A SG CYS 75 A CYS 74 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 A SG CYS 79 A CYS 78 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc7 A NE2 HIS 87 A HIS 86 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc8 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 A SG CYS 210 A CYS 209 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc10 A SG CYS 263 A CYS 262 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc11 A SG CYS 265 A CYS 264 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc12 A SG CYS 268 A CYS 267 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc13 B SG CYS 53 B CYS 52 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc14 B SG CYS 56 B CYS 55 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc15 B SG CYS 66 B CYS 65 1_555 H ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc16 B SG CYS 69 B CYS 68 1_555 H ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc17 B SG CYS 75 B CYS 74 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc18 B SG CYS 79 B CYS 78 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc19 B NE2 HIS 87 B HIS 86 1_555 H ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc20 B SG CYS 91 B CYS 90 1_555 H ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc21 B SG CYS 210 B CYS 209 1_555 I ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc22 B SG CYS 263 B CYS 262 1_555 I ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc23 B SG CYS 265 B CYS 264 1_555 I ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc24 B SG CYS 268 B CYS 267 1_555 I ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C29 H39 N7 O' _chem_comp.formula_weight 501.666 _chem_comp.id EW4 _chem_comp.mon_nstd_flag . _chem_comp.name '[3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTF9975 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 EW4 sing 83 n n N5 C26 EW4 doub 84 n y N5 C28 EW4 sing 85 n y N6 C28 EW4 sing 86 n n C26 C25 EW4 sing 87 n y C28 C23 EW4 doub 88 n y C25 C24 EW4 doub 89 n y C23 C24 EW4 sing 90 n y C23 N4 EW4 sing 91 n y C24 N3 EW4 sing 92 n y N4 C22 EW4 doub 93 n y N3 C22 EW4 sing 94 n y N3 C1 EW4 sing 95 n n C2 C1 EW4 sing 96 n n C2 N EW4 sing 97 n n O C3 EW4 doub 98 n n C1 C EW4 sing 99 n n C1 C21 EW4 sing 100 n n C13 C12 EW4 sing 101 n n C13 C14 EW4 sing 102 n n N C3 EW4 sing 103 n n N C21 EW4 sing 104 n n C3 C4 EW4 sing 105 n n C12 C11 EW4 doub 106 n n C11 C10 EW4 sing 107 n n C17 C18 EW4 sing 108 n n C17 N2 EW4 sing 109 n n C14 C15 EW4 sing 110 n n C15 C16 EW4 sing 111 n n C4 C20 EW4 sing 112 n y C4 C5 EW4 doub 113 n y C10 C16 EW4 sing 114 n n C10 N2 EW4 sing 115 n n C20 C19 EW4 doub 116 n y C18 C7 EW4 sing 117 n n C5 N1 EW4 sing 118 n y N2 C9 EW4 sing 119 n n C19 N1 EW4 sing 120 n y N1 C6 EW4 sing 121 n n C7 C6 EW4 sing 122 n n C7 C8 EW4 sing 123 n n C9 C8 EW4 sing 124 n n C5 H1 EW4 sing 125 n n C6 H2 EW4 sing 126 n n C6 H3 EW4 sing 127 n n C7 H4 EW4 sing 128 n n C8 H5 EW4 sing 129 n n C8 H6 EW4 sing 130 n n C9 H8 EW4 sing 131 n n C9 H9 EW4 sing 132 n n C10 H10 EW4 sing 133 n n C11 H11 EW4 sing 134 n n C12 H12 EW4 sing 135 n n C13 H13 EW4 sing 136 n n C13 H14 EW4 sing 137 n n C14 H15 EW4 sing 138 n n C14 H16 EW4 sing 139 n n C15 H17 EW4 sing 140 n n C15 H18 EW4 sing 141 n n C2 H19 EW4 sing 142 n n C2 H20 EW4 sing 143 n n C21 H21 EW4 sing 144 n n C21 H22 EW4 sing 145 n n C25 H23 EW4 sing 146 n n C27 H24 EW4 sing 147 n n C27 H25 EW4 sing 148 n n C27 H26 EW4 sing 149 n n N6 H27 EW4 sing 150 n n N6 H28 EW4 sing 151 n n C22 H29 EW4 sing 152 n n C H30 EW4 sing 153 n n C H31 EW4 sing 154 n n C H32 EW4 sing 155 n n C20 H33 EW4 sing 156 n n C19 H34 EW4 sing 157 n n C18 H35 EW4 sing 158 n n C18 H36 EW4 sing 159 n n C17 H37 EW4 sing 160 n n C17 H38 EW4 sing 161 n n C16 H39 EW4 sing 162 n n C16 H40 EW4 sing 163 n n # _atom_sites.entry_id 6CBY _atom_sites.fract_transf_matrix[1][1] 0.017295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 2 ZN A 1 1003 1003 ZN ZN . F 3 EW4 A 1 1004 2000 EW4 XXX . G 2 ZN B 1 1001 1001 ZN ZN . H 2 ZN B 1 1002 1002 ZN ZN . I 2 ZN B 1 1003 1003 ZN ZN . J 3 EW4 B 1 1004 2000 EW4 XXX . K 4 HOH A 1 1101 2 HOH HOH . K 4 HOH A 2 1102 40 HOH HOH . K 4 HOH A 3 1103 22 HOH HOH . K 4 HOH A 4 1104 1 HOH HOH . K 4 HOH A 5 1105 27 HOH HOH . K 4 HOH A 6 1106 6 HOH HOH . K 4 HOH A 7 1107 10 HOH HOH . K 4 HOH A 8 1108 43 HOH HOH . K 4 HOH A 9 1109 46 HOH HOH . K 4 HOH A 10 1110 28 HOH HOH . K 4 HOH A 11 1111 30 HOH HOH . K 4 HOH A 12 1112 3 HOH HOH . K 4 HOH A 13 1113 12 HOH HOH . K 4 HOH A 14 1114 14 HOH HOH . K 4 HOH A 15 1115 42 HOH HOH . K 4 HOH A 16 1116 23 HOH HOH . K 4 HOH A 17 1117 25 HOH HOH . K 4 HOH A 18 1118 41 HOH HOH . K 4 HOH A 19 1119 21 HOH HOH . K 4 HOH A 20 1120 13 HOH HOH . K 4 HOH A 21 1121 39 HOH HOH . K 4 HOH A 22 1122 26 HOH HOH . K 4 HOH A 23 1123 20 HOH HOH . K 4 HOH A 24 1124 45 HOH HOH . K 4 HOH A 25 1125 7 HOH HOH . K 4 HOH A 26 1126 11 HOH HOH . K 4 HOH A 27 1127 44 HOH HOH . K 4 HOH A 28 1128 24 HOH HOH . K 4 HOH A 29 1129 29 HOH HOH . K 4 HOH A 30 1130 4 HOH HOH . K 4 HOH A 31 1131 5 HOH HOH . L 4 HOH B 1 1101 18 HOH HOH . L 4 HOH B 2 1102 53 HOH HOH . L 4 HOH B 3 1103 52 HOH HOH . L 4 HOH B 4 1104 34 HOH HOH . L 4 HOH B 5 1105 17 HOH HOH . L 4 HOH B 6 1106 49 HOH HOH . L 4 HOH B 7 1107 16 HOH HOH . L 4 HOH B 8 1108 51 HOH HOH . L 4 HOH B 9 1109 48 HOH HOH . L 4 HOH B 10 1110 35 HOH HOH . L 4 HOH B 11 1111 50 HOH HOH . L 4 HOH B 12 1112 37 HOH HOH . L 4 HOH B 13 1113 19 HOH HOH . L 4 HOH B 14 1114 9 HOH HOH . L 4 HOH B 15 1115 32 HOH HOH . L 4 HOH B 16 1116 31 HOH HOH . L 4 HOH B 17 1117 47 HOH HOH . L 4 HOH B 18 1118 38 HOH HOH . L 4 HOH B 19 1119 33 HOH HOH . L 4 HOH B 20 1120 15 HOH HOH . L 4 HOH B 21 1121 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EW4 . . . J 3 39.941 -25.051 17.853 1 36.42 ? C4 EW4 1004 B 1 HETATM 2 C C5 EW4 . . . J 3 39.823 -26.194 17.08 1 37.18 ? C5 EW4 1004 B 1 HETATM 3 C C6 EW4 . . . J 3 38.445 -28.311 17.124 1 38.32 ? C6 EW4 1004 B 1 HETATM 4 N N1 EW4 . . . J 3 38.807 -26.962 17.581 1 37.59 ? N1 EW4 1004 B 1 HETATM 5 C C7 EW4 . . . J 3 37.279 -28.317 16.151 1 38.01 ? C7 EW4 1004 B 1 HETATM 6 C C8 EW4 . . . J 3 36.608 -29.674 15.982 1 37.93 ? C8 EW4 1004 B 1 HETATM 7 N N2 EW4 . . . J 3 35.762 -28.995 13.737 1 41.3 ? N2 EW4 1004 B 1 HETATM 8 C C9 EW4 . . . J 3 35.401 -29.576 15.044 1 39.51 ? C9 EW4 1004 B 1 HETATM 9 C C10 EW4 . . . J 3 34.653 -28.904 12.766 1 40.72 ? C10 EW4 1004 B 1 HETATM 10 C C11 EW4 . . . J 3 35.094 -29.576 11.497 1 40.26 ? C11 EW4 1004 B 1 HETATM 11 C C12 EW4 . . . J 3 34.436 -29.704 10.352 1 39.54 ? C12 EW4 1004 B 1 HETATM 12 N N3 EW4 . . . J 3 44.333 -24.323 14.868 1 38.53 ? N3 EW4 1004 B 1 HETATM 13 C C13 EW4 . . . J 3 33.049 -29.272 9.967 1 39.55 ? C13 EW4 1004 B 1 HETATM 14 C C14 EW4 . . . J 3 31.951 -29.47 11.014 1 41.75 ? C14 EW4 1004 B 1 HETATM 15 C C15 EW4 . . . J 3 32.141 -28.566 12.242 1 41.1 ? C15 EW4 1004 B 1 HETATM 16 N N4 EW4 . . . J 3 44.372 -25.054 12.742 1 33.34 ? N4 EW4 1004 B 1 HETATM 17 O O EW4 . . . J 3 40.699 -22.875 18.237 1 38.42 ? O EW4 1004 B 1 HETATM 18 C C3 EW4 . . . J 3 40.934 -23.956 17.702 1 39.07 ? C3 EW4 1004 B 1 HETATM 19 N N EW4 . . . J 3 42.07 -24.177 16.997 1 40.68 ? N EW4 1004 B 1 HETATM 20 C C2 EW4 . . . J 3 43.172 -23.219 16.826 1 38.54 ? C2 EW4 1004 B 1 HETATM 21 C C21 EW4 . . . J 3 42.908 -25.362 16.764 1 41.52 ? C21 EW4 1004 B 1 HETATM 22 C C1 EW4 . . . J 3 44.053 -24.401 16.334 1 40.31 ? C1 EW4 1004 B 1 HETATM 23 C C24 EW4 . . . J 3 44.984 -23.345 14.136 1 39.03 ? C24 EW4 1004 B 1 HETATM 24 C C25 EW4 . . . J 3 45.516 -22.114 14.483 1 39 ? C25 EW4 1004 B 1 HETATM 25 C C26 EW4 . . . J 3 46.103 -21.372 13.467 1 39.2 ? C26 EW4 1004 B 1 HETATM 26 C C27 EW4 . . . J 3 46.629 -19.987 13.705 1 35.87 ? C27 EW4 1004 B 1 HETATM 27 N N5 EW4 . . . J 3 46.179 -21.836 12.201 1 38.64 ? N5 EW4 1004 B 1 HETATM 28 C C28 EW4 . . . J 3 45.638 -23.024 11.848 1 36.83 ? C28 EW4 1004 B 1 HETATM 29 N N6 EW4 . . . J 3 45.661 -23.335 10.546 1 34.82 ? N6 EW4 1004 B 1 HETATM 30 C C23 EW4 . . . J 3 45.012 -23.826 12.827 1 37.13 ? C23 EW4 1004 B 1 HETATM 31 C C22 EW4 . . . J 3 43.995 -25.304 13.972 1 33.75 ? C22 EW4 1004 B 1 HETATM 32 C C EW4 . . . J 3 45.336 -24.652 17.116 1 43.23 ? C EW4 1004 B 1 HETATM 33 C C20 EW4 . . . J 3 38.927 -25.132 18.844 1 36.58 ? C20 EW4 1004 B 1 HETATM 34 C C19 EW4 . . . J 3 38.254 -26.296 18.643 1 37.84 ? C19 EW4 1004 B 1 HETATM 35 C C18 EW4 . . . J 3 37.657 -27.784 14.782 1 37.39 ? C18 EW4 1004 B 1 HETATM 36 C C17 EW4 . . . J 3 36.439 -27.696 13.882 1 39.2 ? C17 EW4 1004 B 1 HETATM 37 C C16 EW4 . . . J 3 33.199 -29.033 13.247 1 41.03 ? C16 EW4 1004 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #