data_6CC0
#
_model_server_result.job_id            sIJX_lnrvdlD5fMatInXag 
_model_server_result.datetime_utc      '2024-11-15 01:51:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cc0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6CC0 
#
_exptl.entry_id    6CC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'C12-L-homoserine lactone' 
_entity.formula_weight              283.406 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3S)-2-oxooxolan-3-yl]dodecanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CC0 
_cell.length_a            57.591 
_cell.length_b            91.91 
_cell.length_c            93.999 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H29 N O3' 
_chem_comp.formula_weight    283.406 
_chem_comp.id                EWM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3S)-2-oxooxolan-3-yl]dodecanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C8 EWM doub 83 n n 
C14 C15 EWM sing 84 n n 
C14 C13 EWM sing 85 n n 
C16 C15 EWM sing 86 n n 
C16 C17 EWM sing 87 n n 
C11 C13 EWM sing 88 n n 
C11 C10 EWM sing 89 n n 
C8 C10 EWM sing 90 n n 
C8 N7 EWM sing 91 n n 
O6 C2 EWM doub 92 n n 
C17 C18 EWM sing 93 n n 
C18 C19 EWM sing 94 n n 
C2 C1 EWM sing 95 n n 
C2 OAP EWM sing 96 n n 
N7 C1 EWM sing 97 n n 
C1 C5 EWM sing 98 n n 
OAP C4 EWM sing 99 n n 
C19 C20 EWM sing 100 n n 
C20 C21 EWM sing 101 n n 
C4 C5 EWM sing 102 n n 
N7 H1 EWM sing 103 n n 
C1 H2 EWM sing 104 n n 
C5 H3 EWM sing 105 n n 
C5 H4 EWM sing 106 n n 
C4 H5 EWM sing 107 n n 
C4 H6 EWM sing 108 n n 
C10 H7 EWM sing 109 n n 
C10 H8 EWM sing 110 n n 
C11 H9 EWM sing 111 n n 
C11 H10 EWM sing 112 n n 
C13 H11 EWM sing 113 n n 
C13 H12 EWM sing 114 n n 
C14 H13 EWM sing 115 n n 
C14 H14 EWM sing 116 n n 
C15 H15 EWM sing 117 n n 
C15 H16 EWM sing 118 n n 
C16 H17 EWM sing 119 n n 
C16 H18 EWM sing 120 n n 
C17 H19 EWM sing 121 n n 
C17 H20 EWM sing 122 n n 
C18 H21 EWM sing 123 n n 
C18 H22 EWM sing 124 n n 
C19 H23 EWM sing 125 n n 
C19 H24 EWM sing 126 n n 
C20 H25 EWM sing 127 n n 
C20 H26 EWM sing 128 n n 
C21 H27 EWM sing 129 n n 
C21 H28 EWM sing 130 n n 
C21 H29 EWM sing 131 n n 
#
_atom_sites.entry_id                     6CC0 
_atom_sites.fract_transf_matrix[1][1]    0.017364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01088 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010638 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EWM A 1 301 2 EWM HL2 . 
D 2 EWM B 1 301 1 EWM HL2 . 
E 3 HOH A 1 401 4 HOH HOH . 
E 3 HOH A 2 402 21 HOH HOH . 
E 3 HOH A 3 403 35 HOH HOH . 
E 3 HOH A 4 404 49 HOH HOH . 
E 3 HOH A 5 405 1 HOH HOH . 
E 3 HOH A 6 406 48 HOH HOH . 
E 3 HOH A 7 407 50 HOH HOH . 
E 3 HOH A 8 408 20 HOH HOH . 
E 3 HOH A 9 409 5 HOH HOH . 
E 3 HOH A 10 410 37 HOH HOH . 
E 3 HOH A 11 411 22 HOH HOH . 
E 3 HOH A 12 412 6 HOH HOH . 
E 3 HOH A 13 413 13 HOH HOH . 
E 3 HOH A 14 414 44 HOH HOH . 
E 3 HOH A 15 415 29 HOH HOH . 
E 3 HOH A 16 416 25 HOH HOH . 
E 3 HOH A 17 417 14 HOH HOH . 
E 3 HOH A 18 418 38 HOH HOH . 
E 3 HOH A 19 419 28 HOH HOH . 
E 3 HOH A 20 420 16 HOH HOH . 
E 3 HOH A 21 421 18 HOH HOH . 
E 3 HOH A 22 422 19 HOH HOH . 
E 3 HOH A 23 423 42 HOH HOH . 
E 3 HOH A 24 424 43 HOH HOH . 
E 3 HOH A 25 425 34 HOH HOH . 
E 3 HOH A 26 426 41 HOH HOH . 
E 3 HOH A 27 427 17 HOH HOH . 
E 3 HOH A 28 428 40 HOH HOH . 
F 3 HOH B 1 401 36 HOH HOH . 
F 3 HOH B 2 402 23 HOH HOH . 
F 3 HOH B 3 403 30 HOH HOH . 
F 3 HOH B 4 404 10 HOH HOH . 
F 3 HOH B 5 405 47 HOH HOH . 
F 3 HOH B 6 406 11 HOH HOH . 
F 3 HOH B 7 407 46 HOH HOH . 
F 3 HOH B 8 408 2 HOH HOH . 
F 3 HOH B 9 409 32 HOH HOH . 
F 3 HOH B 10 410 31 HOH HOH . 
F 3 HOH B 11 411 26 HOH HOH . 
F 3 HOH B 12 412 27 HOH HOH . 
F 3 HOH B 13 413 39 HOH HOH . 
F 3 HOH B 14 414 8 HOH HOH . 
F 3 HOH B 15 415 3 HOH HOH . 
F 3 HOH B 16 416 9 HOH HOH . 
F 3 HOH B 17 417 51 HOH HOH . 
F 3 HOH B 18 418 33 HOH HOH . 
F 3 HOH B 19 419 24 HOH HOH . 
F 3 HOH B 20 420 7 HOH HOH . 
F 3 HOH B 21 421 12 HOH HOH . 
F 3 HOH B 22 422 45 HOH HOH . 
F 3 HOH B 23 423 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 EWM . . . D 2 -45.151 8.352 8.138 1 20.3 ? O9 EWM 301 B 1 
HETATM 2 C C8 EWM . . . D 2 -44.95 7.71 9.154 1 16.88 ? C8 EWM 301 B 1 
HETATM 3 N N7 EWM . . . D 2 -44.482 8.378 10.338 1 14.92 ? N7 EWM 301 B 1 
HETATM 4 C C1 EWM . . . D 2 -44.244 9.834 10.382 1 10.16 ? C1 EWM 301 B 1 
HETATM 5 C C5 EWM . . . D 2 -44.256 10.452 11.788 1 8.79 ? C5 EWM 301 B 1 
HETATM 6 C C4 EWM . . . D 2 -43.318 11.656 11.667 1 7.94 ? C4 EWM 301 B 1 
HETATM 7 O OAP EWM . . . D 2 -42.388 11.328 10.678 1 8.09 ? OAP EWM 301 B 1 
HETATM 8 C C2 EWM . . . D 2 -42.796 10.199 10.04 1 9.14 ? C2 EWM 301 B 1 
HETATM 9 O O6 EWM . . . D 2 -42.01 9.632 9.308 1 14.53 ? O6 EWM 301 B 1 
HETATM 10 C C10 EWM . . . D 2 -45.16 6.233 9.192 1 8.9 ? C10 EWM 301 B 1 
HETATM 11 C C11 EWM . . . D 2 -44.006 5.48 8.548 1 14.03 ? C11 EWM 301 B 1 
HETATM 12 C C13 EWM . . . D 2 -44.073 3.962 8.794 1 18.19 ? C13 EWM 301 B 1 
HETATM 13 C C14 EWM . . . D 2 -45.38 3.317 8.216 1 20.2 ? C14 EWM 301 B 1 
HETATM 14 C C15 EWM . . . D 2 -45.513 1.832 8.49 1 20.53 ? C15 EWM 301 B 1 
HETATM 15 C C16 EWM . . . D 2 -46.937 1.361 8.324 1 25.99 ? C16 EWM 301 B 1 
HETATM 16 C C17 EWM . . . D 2 -47.381 0.279 9.335 1 29.52 ? C17 EWM 301 B 1 
HETATM 17 C C18 EWM . . . D 2 -48.92 0.26 9.519 1 30.91 ? C18 EWM 301 B 1 
HETATM 18 C C19 EWM . . . D 2 -49.356 -0.13 10.943 1 29.63 ? C19 EWM 301 B 1 
HETATM 19 C C20 EWM . . . D 2 -50.613 0.601 11.38 1 25.34 ? C20 EWM 301 B 1 
HETATM 20 C C21 EWM . . . D 2 -50.296 1.429 12.582 1 25.12 ? C21 EWM 301 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#