data_6CC9 # _model_server_result.job_id iB5TbzHRCJi5C51FcoUmTg _model_server_result.datetime_utc '2024-11-05 00:36:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":237}' # _entry.id 6CC9 # _exptl.entry_id 6CC9 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 522.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id YA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 312 n n PG O2G GNP sing 313 n n PG O3G GNP sing 314 n n PG N3B GNP sing 315 n n O2G HOG2 GNP sing 316 n n O3G HOG3 GNP sing 317 n n N3B PB GNP sing 318 n n N3B HNB3 GNP sing 319 n n PB O1B GNP doub 320 n n PB O2B GNP sing 321 n n PB O3A GNP sing 322 n n O2B HOB2 GNP sing 323 n n O3A PA GNP sing 324 n n PA O1A GNP doub 325 n n PA O2A GNP sing 326 n n PA O5' GNP sing 327 n n O2A HOA2 GNP sing 328 n n O5' C5' GNP sing 329 n n C5' C4' GNP sing 330 n n C5' "H5'2" GNP sing 331 n n C5' "H5'1" GNP sing 332 n n C4' O4' GNP sing 333 n n C4' C3' GNP sing 334 n n C4' H4' GNP sing 335 n n O4' C1' GNP sing 336 n n C3' O3' GNP sing 337 n n C3' C2' GNP sing 338 n n C3' H3' GNP sing 339 n n O3' HO3' GNP sing 340 n n C2' O2' GNP sing 341 n n C2' C1' GNP sing 342 n n C2' H2' GNP sing 343 n n O2' HO2' GNP sing 344 n n C1' N9 GNP sing 345 n n C1' H1' GNP sing 346 n n N9 C8 GNP sing 347 n y N9 C4 GNP sing 348 n y C8 N7 GNP doub 349 n y C8 H8 GNP sing 350 n n N7 C5 GNP sing 351 n y C5 C6 GNP sing 352 n y C5 C4 GNP doub 353 n y C6 O6 GNP doub 354 n n C6 N1 GNP sing 355 n y N1 C2 GNP sing 356 n y N1 HN1 GNP sing 357 n n C2 N2 GNP sing 358 n n C2 N3 GNP doub 359 n y N2 HN21 GNP sing 360 n n N2 HN22 GNP sing 361 n n N3 C4 GNP sing 362 n y # _atom_sites.entry_id 6CC9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PCW A 1 401 2 PCW DOC . E 3 PCW A 1 402 4 PCW DOC . F 3 PCW A 1 403 15 PCW DOC . G 3 PCW A 1 404 20 PCW DOC . H 3 PCW A 1 405 21 PCW DOC . I 3 PCW A 1 406 32 PCW DOC . J 4 17F A 1 407 33 17F DOS . K 3 PCW A 1 408 41 PCW DOC . L 3 PCW A 1 409 44 PCW DOC . M 3 PCW A 1 410 59 PCW DOC . N 3 PCW A 1 411 61 PCW DOC . O 3 PCW B 1 201 1 PCW DOC . P 3 PCW B 1 202 3 PCW DOC . Q 3 PCW B 1 203 5 PCW DOC . R 3 PCW B 1 204 6 PCW DOC . S 3 PCW B 1 205 7 PCW DOC . T 3 PCW B 1 206 9 PCW DOC . U 3 PCW B 1 207 10 PCW DOC . V 3 PCW B 1 208 11 PCW DOC . W 3 PCW B 1 209 12 PCW DOC . X 3 PCW B 1 210 13 PCW DOC . Y 3 PCW B 1 211 14 PCW DOC . Z 3 PCW B 1 212 16 PCW DOC . AA 3 PCW B 1 213 17 PCW DOC . BA 3 PCW B 1 214 18 PCW DOC . CA 3 PCW B 1 215 19 PCW DOC . DA 3 PCW B 1 216 22 PCW DOC . EA 3 PCW B 1 217 23 PCW DOC . FA 3 PCW B 1 218 24 PCW DOC . GA 3 PCW B 1 219 25 PCW DOC . HA 3 PCW B 1 220 26 PCW DOC . IA 3 PCW B 1 221 27 PCW DOC . JA 3 PCW B 1 222 28 PCW DOC . KA 3 PCW B 1 223 29 PCW DOC . LA 3 PCW B 1 224 30 PCW DOC . MA 3 PCW B 1 225 31 PCW DOC . NA 4 17F B 1 226 34 17F DOS . OA 4 17F B 1 227 35 17F DOS . PA 4 17F B 1 228 36 17F DOS . QA 4 17F B 1 229 37 17F DOS . RA 4 17F B 1 230 38 17F DOS . SA 4 17F B 1 231 39 17F DOS . TA 4 17F B 1 232 40 17F DOS . UA 3 PCW B 1 233 43 PCW DOC . VA 3 PCW B 1 234 63 PCW DOC . WA 3 PCW B 1 235 69 PCW DOC . XA 4 17F B 1 236 75 17F DOS . YA 5 GNP B 1 237 201 GNP GNP . ZA 6 MG B 1 238 202 MG MG2 . AB 7 EWS B 1 239 203 EWS DRG . BB 3 PCW C 1 601 8 PCW DOC . CB 3 PCW C 1 602 42 PCW DOC . DB 3 PCW C 1 603 45 PCW DOC . EB 3 PCW C 1 604 46 PCW DOC . FB 3 PCW C 1 605 47 PCW DOC . GB 3 PCW C 1 606 48 PCW DOC . HB 3 PCW C 1 607 49 PCW DOC . IB 3 PCW C 1 608 50 PCW DOC . JB 3 PCW C 1 609 51 PCW DOC . KB 3 PCW C 1 610 52 PCW DOC . LB 3 PCW C 1 611 53 PCW DOC . MB 3 PCW C 1 612 54 PCW DOC . NB 3 PCW C 1 613 55 PCW DOC . OB 3 PCW C 1 614 56 PCW DOC . PB 3 PCW C 1 615 57 PCW DOC . QB 3 PCW C 1 616 58 PCW DOC . RB 3 PCW C 1 617 60 PCW DOC . SB 3 PCW C 1 618 62 PCW DOC . TB 3 PCW C 1 619 64 PCW DOC . UB 3 PCW C 1 620 65 PCW DOC . VB 3 PCW C 1 621 66 PCW DOC . WB 3 PCW C 1 622 67 PCW DOC . XB 3 PCW C 1 623 68 PCW DOC . YB 3 PCW C 1 624 70 PCW DOC . ZB 3 PCW C 1 625 71 PCW DOC . AC 3 PCW C 1 626 72 PCW DOC . BC 4 17F C 1 627 73 17F DOS . CC 4 17F C 1 628 74 17F DOS . DC 4 17F C 1 629 76 17F DOS . EC 4 17F C 1 630 77 17F DOS . FC 4 17F C 1 631 78 17F DOS . GC 4 17F C 1 632 79 17F DOS . HC 4 17F C 1 633 80 17F DOS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . YA 5 43.032 -5.579 -23.473 1 10 0 PG GNP 237 B 1 HETATM 2 O O1G GNP . . . YA 5 42.094 -6.616 -24.08 1 10 0 O1G GNP 237 B 1 HETATM 3 O O2G GNP . . . YA 5 44.273 -6.193 -22.918 1 10 0 O2G GNP 237 B 1 HETATM 4 O O3G GNP . . . YA 5 42.454 -4.771 -22.383 1 10 0 O3G GNP 237 B 1 HETATM 5 N N3B GNP . . . YA 5 43.405 -4.495 -24.623 1 10 0 N3B GNP 237 B 1 HETATM 6 P PB GNP . . . YA 5 42.403 -3.72 -25.609 1 10 0 PB GNP 237 B 1 HETATM 7 O O1B GNP . . . YA 5 41.629 -4.736 -26.319 1 10 0 O1B GNP 237 B 1 HETATM 8 O O2B GNP . . . YA 5 41.547 -2.751 -24.897 1 10 0 O2B GNP 237 B 1 HETATM 9 O O3A GNP . . . YA 5 43.277 -2.971 -26.654 1 10 0 O3A GNP 237 B 1 HETATM 10 P PA GNP . . . YA 5 44.671 -2.238 -26.568 1 10 0 PA GNP 237 B 1 HETATM 11 O O1A GNP . . . YA 5 45.779 -3.168 -26.326 1 10 0 O1A GNP 237 B 1 HETATM 12 O O2A GNP . . . YA 5 44.572 -1.025 -25.724 1 10 0 O2A GNP 237 B 1 HETATM 13 O O5' GNP . . . YA 5 44.951 -1.71 -28.007 1 10 0 O5' GNP 237 B 1 HETATM 14 C C5' GNP . . . YA 5 45.099 -2.656 -29.092 1 10 0 C5' GNP 237 B 1 HETATM 15 C C4' GNP . . . YA 5 45.855 -2.006 -30.223 1 10 0 C4' GNP 237 B 1 HETATM 16 O O4' GNP . . . YA 5 44.901 -1.582 -31.244 1 10 0 O4' GNP 237 B 1 HETATM 17 C C3' GNP . . . YA 5 46.637 -0.748 -29.831 1 10 0 C3' GNP 237 B 1 HETATM 18 O O3' GNP . . . YA 5 47.932 -0.782 -30.409 1 10 0 O3' GNP 237 B 1 HETATM 19 C C2' GNP . . . YA 5 45.748 0.397 -30.317 1 10 0 C2' GNP 237 B 1 HETATM 20 O O2' GNP . . . YA 5 46.394 1.608 -30.636 1 10 0 O2' GNP 237 B 1 HETATM 21 C C1' GNP . . . YA 5 45.029 -0.187 -31.52 1 10 0 C1' GNP 237 B 1 HETATM 22 N N9 GNP . . . YA 5 43.67 0.368 -31.747 1 10 0 N9 GNP 237 B 1 HETATM 23 C C8 GNP . . . YA 5 42.727 0.585 -30.79 1 10 0 C8 GNP 237 B 1 HETATM 24 N N7 GNP . . . YA 5 41.617 1.077 -31.256 1 10 0 N7 GNP 237 B 1 HETATM 25 C C5 GNP . . . YA 5 41.835 1.2 -32.632 1 10 0 C5 GNP 237 B 1 HETATM 26 C C6 GNP . . . YA 5 40.985 1.684 -33.685 1 10 0 C6 GNP 237 B 1 HETATM 27 O O6 GNP . . . YA 5 39.85 2.113 -33.642 1 10 0 O6 GNP 237 B 1 HETATM 28 N N1 GNP . . . YA 5 41.584 1.634 -34.92 1 10 0 N1 GNP 237 B 1 HETATM 29 C C2 GNP . . . YA 5 42.859 1.189 -35.156 1 10 0 C2 GNP 237 B 1 HETATM 30 N N2 GNP . . . YA 5 43.24 1.231 -36.444 1 10 0 N2 GNP 237 B 1 HETATM 31 N N3 GNP . . . YA 5 43.661 0.736 -34.2 1 10 0 N3 GNP 237 B 1 HETATM 32 C C4 GNP . . . YA 5 43.093 0.764 -32.955 1 10 0 C4 GNP 237 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 119 _model_server_stats.query_time_ms 3130 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #