data_6CCN # _model_server_result.job_id yLAGA5ExbNGQ0UyrnuMMzA _model_server_result.datetime_utc '2025-09-17 07:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ccn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6CCN # _exptl.entry_id 6CCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.345 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,4-dihydroxy-N-[2-(7-hydroxy-1H-benzimidazol-2-yl)ethyl]-3,3-dimethylbutanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CCN _cell.length_a 135.06 _cell.length_b 135.06 _cell.length_c 135.06 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA 24-meric 24 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,6,12 A,C,D,E,F,K 2 1,2,3,4,5,6,7,8,9,10,11,12 B,G,H,I,J,L 2 13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_454 x-1/2,y+1/2,z-1/2 1 0 0 0 1 0 0 0 1 -67.53 67.53 -67.53 14 'crystal symmetry operation' 14_544 -x+1/2,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 67.53 -67.53 -67.53 15 'crystal symmetry operation' 15_555 -x+1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 67.53 67.53 67.53 16 'crystal symmetry operation' 16_445 x-1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -67.53 -67.53 67.53 17 'crystal symmetry operation' 17_445 z-1/2,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 -67.53 -67.53 67.53 18 'crystal symmetry operation' 18_454 z-1/2,-x+1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 -67.53 67.53 -67.53 19 'crystal symmetry operation' 19_555 -z+1/2,-x+1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 67.53 67.53 67.53 20 'crystal symmetry operation' 20_544 -z+1/2,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 67.53 -67.53 -67.53 21 'crystal symmetry operation' 21_544 y+1/2,z-1/2,x-1/2 0 1 0 0 0 1 1 0 0 67.53 -67.53 -67.53 22 'crystal symmetry operation' 22_445 -y-1/2,z-1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 -67.53 -67.53 67.53 23 'crystal symmetry operation' 23_555 y+1/2,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 67.53 67.53 67.53 24 'crystal symmetry operation' 24_454 -y-1/2,-z+1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 -67.53 67.53 -67.53 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C15 H21 N3 O4' _chem_comp.formula_weight 307.345 _chem_comp.id EXS _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,4-dihydroxy-N-[2-(7-hydroxy-1H-benzimidazol-2-yl)ethyl]-3,3-dimethylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C8 EXS sing 70 n y N12 C1 EXS doub 71 n y C7 C8 EXS doub 72 n y C7 C6 EXS sing 73 n y C8 C9 EXS sing 74 n y C2 C1 EXS sing 75 n n C2 C3 EXS sing 76 n n C1 N11 EXS sing 77 n y O17 C16 EXS sing 78 n n C6 C5 EXS doub 79 n y C9 N11 EXS sing 80 n y C9 C10 EXS doub 81 n y N4 C3 EXS sing 82 n n N4 C14 EXS sing 83 n n C5 C10 EXS sing 84 n y C10 O13 EXS sing 85 n n C16 C14 EXS sing 86 n n C16 C18 EXS sing 87 n n C14 O15 EXS doub 88 n n O22 C20 EXS sing 89 n n C20 C18 EXS sing 90 n n C18 C19 EXS sing 91 n n C18 C21 EXS sing 92 n n C2 H1 EXS sing 93 n n C2 H2 EXS sing 94 n n C3 H3 EXS sing 95 n n C3 H4 EXS sing 96 n n C16 H5 EXS sing 97 n n C19 H6 EXS sing 98 n n C19 H7 EXS sing 99 n n C19 H8 EXS sing 100 n n C20 H9 EXS sing 101 n n C20 H10 EXS sing 102 n n C21 H11 EXS sing 103 n n C21 H12 EXS sing 104 n n C21 H13 EXS sing 105 n n N4 H14 EXS sing 106 n n C5 H15 EXS sing 107 n n C6 H16 EXS sing 108 n n C7 H17 EXS sing 109 n n N11 H18 EXS sing 110 n n O13 H20 EXS sing 111 n n O17 H21 EXS sing 112 n n O22 H22 EXS sing 113 n n # _atom_sites.entry_id 6CCN _atom_sites.fract_transf_matrix[1][1] 0.007404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EXS A 1 201 1 EXS LI1 . D 3 SO4 A 1 202 1 SO4 SO4 . E 3 SO4 A 1 203 3 SO4 SO4 . F 3 SO4 A 1 204 4 SO4 SO4 . G 2 EXS B 1 201 1 EXS LI1 . H 3 SO4 B 1 202 2 SO4 SO4 . I 3 SO4 B 1 203 5 SO4 SO4 . J 3 SO4 B 1 204 6 SO4 SO4 . K 4 HOH A 1 301 140 HOH HOH . K 4 HOH A 2 302 48 HOH HOH . K 4 HOH A 3 303 122 HOH HOH . K 4 HOH A 4 304 153 HOH HOH . K 4 HOH A 5 305 135 HOH HOH . K 4 HOH A 6 306 116 HOH HOH . K 4 HOH A 7 307 70 HOH HOH . K 4 HOH A 8 308 118 HOH HOH . K 4 HOH A 9 309 87 HOH HOH . K 4 HOH A 10 310 148 HOH HOH . K 4 HOH A 11 311 124 HOH HOH . K 4 HOH A 12 312 45 HOH HOH . K 4 HOH A 13 313 33 HOH HOH . K 4 HOH A 14 314 60 HOH HOH . K 4 HOH A 15 315 167 HOH HOH . K 4 HOH A 16 316 150 HOH HOH . K 4 HOH A 17 317 152 HOH HOH . K 4 HOH A 18 318 38 HOH HOH . K 4 HOH A 19 319 141 HOH HOH . K 4 HOH A 20 320 5 HOH HOH . K 4 HOH A 21 321 88 HOH HOH . K 4 HOH A 22 322 136 HOH HOH . K 4 HOH A 23 323 10 HOH HOH . K 4 HOH A 24 324 47 HOH HOH . K 4 HOH A 25 325 69 HOH HOH . K 4 HOH A 26 326 104 HOH HOH . K 4 HOH A 27 327 80 HOH HOH . K 4 HOH A 28 328 28 HOH HOH . K 4 HOH A 29 329 56 HOH HOH . K 4 HOH A 30 330 51 HOH HOH . K 4 HOH A 31 331 146 HOH HOH . K 4 HOH A 32 332 58 HOH HOH . K 4 HOH A 33 333 50 HOH HOH . K 4 HOH A 34 334 55 HOH HOH . K 4 HOH A 35 335 14 HOH HOH . K 4 HOH A 36 336 57 HOH HOH . K 4 HOH A 37 337 52 HOH HOH . K 4 HOH A 38 338 81 HOH HOH . K 4 HOH A 39 339 169 HOH HOH . K 4 HOH A 40 340 37 HOH HOH . K 4 HOH A 41 341 13 HOH HOH . K 4 HOH A 42 342 97 HOH HOH . K 4 HOH A 43 343 130 HOH HOH . K 4 HOH A 44 344 78 HOH HOH . K 4 HOH A 45 345 129 HOH HOH . K 4 HOH A 46 346 138 HOH HOH . K 4 HOH A 47 347 76 HOH HOH . K 4 HOH A 48 348 73 HOH HOH . K 4 HOH A 49 349 27 HOH HOH . K 4 HOH A 50 350 26 HOH HOH . K 4 HOH A 51 351 62 HOH HOH . K 4 HOH A 52 352 25 HOH HOH . K 4 HOH A 53 353 99 HOH HOH . K 4 HOH A 54 354 119 HOH HOH . K 4 HOH A 55 355 2 HOH HOH . K 4 HOH A 56 356 131 HOH HOH . K 4 HOH A 57 357 168 HOH HOH . K 4 HOH A 58 358 163 HOH HOH . K 4 HOH A 59 359 74 HOH HOH . K 4 HOH A 60 360 93 HOH HOH . K 4 HOH A 61 361 43 HOH HOH . K 4 HOH A 62 362 90 HOH HOH . K 4 HOH A 63 363 4 HOH HOH . K 4 HOH A 64 364 8 HOH HOH . K 4 HOH A 65 365 96 HOH HOH . K 4 HOH A 66 366 145 HOH HOH . K 4 HOH A 67 367 17 HOH HOH . K 4 HOH A 68 368 79 HOH HOH . K 4 HOH A 69 369 66 HOH HOH . K 4 HOH A 70 370 94 HOH HOH . K 4 HOH A 71 371 173 HOH HOH . K 4 HOH A 72 372 40 HOH HOH . K 4 HOH A 73 373 89 HOH HOH . K 4 HOH A 74 374 158 HOH HOH . K 4 HOH A 75 375 31 HOH HOH . K 4 HOH A 76 376 15 HOH HOH . K 4 HOH A 77 377 154 HOH HOH . K 4 HOH A 78 378 162 HOH HOH . K 4 HOH A 79 379 175 HOH HOH . K 4 HOH A 80 380 67 HOH HOH . K 4 HOH A 81 381 126 HOH HOH . K 4 HOH A 82 382 24 HOH HOH . K 4 HOH A 83 383 134 HOH HOH . K 4 HOH A 84 384 110 HOH HOH . K 4 HOH A 85 385 164 HOH HOH . K 4 HOH A 86 386 34 HOH HOH . K 4 HOH A 87 387 170 HOH HOH . K 4 HOH A 88 388 115 HOH HOH . K 4 HOH A 89 389 132 HOH HOH . K 4 HOH A 90 390 174 HOH HOH . K 4 HOH A 91 391 105 HOH HOH . L 4 HOH B 1 301 1 HOH HOH . L 4 HOH B 2 302 139 HOH HOH . L 4 HOH B 3 303 144 HOH HOH . L 4 HOH B 4 304 123 HOH HOH . L 4 HOH B 5 305 109 HOH HOH . L 4 HOH B 6 306 149 HOH HOH . L 4 HOH B 7 307 143 HOH HOH . L 4 HOH B 8 308 113 HOH HOH . L 4 HOH B 9 309 42 HOH HOH . L 4 HOH B 10 310 22 HOH HOH . L 4 HOH B 11 311 36 HOH HOH . L 4 HOH B 12 312 59 HOH HOH . L 4 HOH B 13 313 125 HOH HOH . L 4 HOH B 14 314 171 HOH HOH . L 4 HOH B 15 315 61 HOH HOH . L 4 HOH B 16 316 41 HOH HOH . L 4 HOH B 17 317 11 HOH HOH . L 4 HOH B 18 318 151 HOH HOH . L 4 HOH B 19 319 39 HOH HOH . L 4 HOH B 20 320 23 HOH HOH . L 4 HOH B 21 321 20 HOH HOH . L 4 HOH B 22 322 156 HOH HOH . L 4 HOH B 23 323 98 HOH HOH . L 4 HOH B 24 324 65 HOH HOH . L 4 HOH B 25 325 6 HOH HOH . L 4 HOH B 26 326 29 HOH HOH . L 4 HOH B 27 327 18 HOH HOH . L 4 HOH B 28 328 108 HOH HOH . L 4 HOH B 29 329 68 HOH HOH . L 4 HOH B 30 330 112 HOH HOH . L 4 HOH B 31 331 46 HOH HOH . L 4 HOH B 32 332 121 HOH HOH . L 4 HOH B 33 333 77 HOH HOH . L 4 HOH B 34 334 101 HOH HOH . L 4 HOH B 35 335 64 HOH HOH . L 4 HOH B 36 336 137 HOH HOH . L 4 HOH B 37 337 32 HOH HOH . L 4 HOH B 38 338 155 HOH HOH . L 4 HOH B 39 339 160 HOH HOH . L 4 HOH B 40 340 103 HOH HOH . L 4 HOH B 41 341 16 HOH HOH . L 4 HOH B 42 342 53 HOH HOH . L 4 HOH B 43 343 44 HOH HOH . L 4 HOH B 44 344 92 HOH HOH . L 4 HOH B 45 345 54 HOH HOH . L 4 HOH B 46 346 157 HOH HOH . L 4 HOH B 47 347 165 HOH HOH . L 4 HOH B 48 348 147 HOH HOH . L 4 HOH B 49 349 84 HOH HOH . L 4 HOH B 50 350 95 HOH HOH . L 4 HOH B 51 351 9 HOH HOH . L 4 HOH B 52 352 107 HOH HOH . L 4 HOH B 53 353 12 HOH HOH . L 4 HOH B 54 354 100 HOH HOH . L 4 HOH B 55 355 19 HOH HOH . L 4 HOH B 56 356 117 HOH HOH . L 4 HOH B 57 357 35 HOH HOH . L 4 HOH B 58 358 86 HOH HOH . L 4 HOH B 59 359 83 HOH HOH . L 4 HOH B 60 360 82 HOH HOH . L 4 HOH B 61 361 91 HOH HOH . L 4 HOH B 62 362 102 HOH HOH . L 4 HOH B 63 363 71 HOH HOH . L 4 HOH B 64 364 49 HOH HOH . L 4 HOH B 65 365 7 HOH HOH . L 4 HOH B 66 366 63 HOH HOH . L 4 HOH B 67 367 75 HOH HOH . L 4 HOH B 68 368 3 HOH HOH . L 4 HOH B 69 369 106 HOH HOH . L 4 HOH B 70 370 142 HOH HOH . L 4 HOH B 71 371 172 HOH HOH . L 4 HOH B 72 372 30 HOH HOH . L 4 HOH B 73 373 161 HOH HOH . L 4 HOH B 74 374 21 HOH HOH . L 4 HOH B 75 375 127 HOH HOH . L 4 HOH B 76 376 114 HOH HOH . L 4 HOH B 77 377 111 HOH HOH . L 4 HOH B 78 378 159 HOH HOH . L 4 HOH B 79 379 128 HOH HOH . L 4 HOH B 80 380 72 HOH HOH . L 4 HOH B 81 381 133 HOH HOH . L 4 HOH B 82 382 166 HOH HOH . L 4 HOH B 83 383 85 HOH HOH . L 4 HOH B 84 384 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EXS . . . G 2 36.888 -35.407 57.087 1 54.39 ? C1 EXS 201 B 1 HETATM 2 C C2 EXS . . . G 2 38.232 -35.494 57.745 1 55.66 ? C2 EXS 201 B 1 HETATM 3 C C3 EXS . . . G 2 39.019 -34.198 57.411 1 57.35 ? C3 EXS 201 B 1 HETATM 4 C C14 EXS . . . G 2 38.396 -33.324 55.138 1 65.15 ? C14 EXS 201 B 1 HETATM 5 C C16 EXS . . . G 2 38.704 -33.168 53.662 1 67.33 ? C16 EXS 201 B 1 HETATM 6 C C18 EXS . . . G 2 39.791 -32.072 53.318 1 68.05 ? C18 EXS 201 B 1 HETATM 7 C C19 EXS . . . G 2 41.209 -32.384 53.896 1 67.12 ? C19 EXS 201 B 1 HETATM 8 C C20 EXS . . . G 2 39.931 -31.852 51.769 1 68.41 ? C20 EXS 201 B 1 HETATM 9 C C21 EXS . . . G 2 39.351 -30.703 53.929 1 67.49 ? C21 EXS 201 B 1 HETATM 10 N N4 EXS . . . G 2 39.236 -34.016 55.972 1 60.77 ? N4 EXS 201 B 1 HETATM 11 C C5 EXS . . . G 2 32.844 -34.375 55.54 1 44.7 ? C5 EXS 201 B 1 HETATM 12 C C6 EXS . . . G 2 33.206 -35.353 54.584 1 44.57 ? C6 EXS 201 B 1 HETATM 13 C C7 EXS . . . G 2 34.439 -36.038 54.65 1 46.01 ? C7 EXS 201 B 1 HETATM 14 C C8 EXS . . . G 2 35.305 -35.653 55.678 1 49.66 ? C8 EXS 201 B 1 HETATM 15 C C9 EXS . . . G 2 34.972 -34.633 56.577 1 48.8 ? C9 EXS 201 B 1 HETATM 16 C C10 EXS . . . G 2 33.735 -33.986 56.576 1 44.3 ? C10 EXS 201 B 1 HETATM 17 N N11 EXS . . . G 2 36.011 -34.546 57.418 1 52.45 ? N11 EXS 201 B 1 HETATM 18 N N12 EXS . . . G 2 36.534 -36.106 56.03 1 53.65 ? N12 EXS 201 B 1 HETATM 19 O O13 EXS . . . G 2 33.463 -32.993 57.529 1 33.36 ? O13 EXS 201 B 1 HETATM 20 O O15 EXS . . . G 2 37.362 -32.775 55.49 1 66.09 ? O15 EXS 201 B 1 HETATM 21 O O17 EXS . . . G 2 38.987 -34.463 53.1 1 68.42 ? O17 EXS 201 B 1 HETATM 22 O O22 EXS . . . G 2 38.87 -32.444 50.992 1 68.07 ? O22 EXS 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #