data_6CCY # _model_server_result.job_id '_DLRaVEbW_N9y_qcxheCAw' _model_server_result.datetime_utc '2024-10-18 04:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ccy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6CCY # _exptl.entry_id 6CCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.612 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-4-(4-{4-[4-fluoro-3-(trifluoromethyl)phenyl]-1-[2-(pyrrolidin-1-yl)ethyl]-1H-imidazol-2-yl}piperidin-1-yl)-5-methyl-5,8-dihydropyrido[2,3-d]pyrimidin-7(6H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CCY _cell.length_a 49.664 _cell.length_b 66.961 _cell.length_c 109.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 167 A LYS 307 1_555 A N TPO 168 A TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C TPO 168 A TPO 308 1_555 A N PHE 169 A PHE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C29 H33 F4 N7 O' _chem_comp.formula_weight 571.612 _chem_comp.id EX4 _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-4-(4-{4-[4-fluoro-3-(trifluoromethyl)phenyl]-1-[2-(pyrrolidin-1-yl)ethyl]-1H-imidazol-2-yl}piperidin-1-yl)-5-methyl-5,8-dihydropyrido[2,3-d]pyrimidin-7(6H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CCY _atom_sites.fract_transf_matrix[1][1] 0.020135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EX4 A 1 501 1 EX4 SX1 . C 3 HOH A 1 601 23 HOH HOH . C 3 HOH A 2 602 60 HOH HOH . C 3 HOH A 3 603 65 HOH HOH . C 3 HOH A 4 604 21 HOH HOH . C 3 HOH A 5 605 49 HOH HOH . C 3 HOH A 6 606 19 HOH HOH . C 3 HOH A 7 607 32 HOH HOH . C 3 HOH A 8 608 55 HOH HOH . C 3 HOH A 9 609 66 HOH HOH . C 3 HOH A 10 610 61 HOH HOH . C 3 HOH A 11 611 17 HOH HOH . C 3 HOH A 12 612 10 HOH HOH . C 3 HOH A 13 613 58 HOH HOH . C 3 HOH A 14 614 42 HOH HOH . C 3 HOH A 15 615 62 HOH HOH . C 3 HOH A 16 616 57 HOH HOH . C 3 HOH A 17 617 16 HOH HOH . C 3 HOH A 18 618 33 HOH HOH . C 3 HOH A 19 619 47 HOH HOH . C 3 HOH A 20 620 41 HOH HOH . C 3 HOH A 21 621 9 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 63 HOH HOH . C 3 HOH A 24 624 8 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 43 HOH HOH . C 3 HOH A 27 627 7 HOH HOH . C 3 HOH A 28 628 45 HOH HOH . C 3 HOH A 29 629 25 HOH HOH . C 3 HOH A 30 630 18 HOH HOH . C 3 HOH A 31 631 59 HOH HOH . C 3 HOH A 32 632 13 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 20 HOH HOH . C 3 HOH A 35 635 14 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 44 HOH HOH . C 3 HOH A 38 638 27 HOH HOH . C 3 HOH A 39 639 30 HOH HOH . C 3 HOH A 40 640 12 HOH HOH . C 3 HOH A 41 641 56 HOH HOH . C 3 HOH A 42 642 28 HOH HOH . C 3 HOH A 43 643 38 HOH HOH . C 3 HOH A 44 644 24 HOH HOH . C 3 HOH A 45 645 64 HOH HOH . C 3 HOH A 46 646 39 HOH HOH . C 3 HOH A 47 647 46 HOH HOH . C 3 HOH A 48 648 40 HOH HOH . C 3 HOH A 49 649 53 HOH HOH . C 3 HOH A 50 650 54 HOH HOH . C 3 HOH A 51 651 11 HOH HOH . C 3 HOH A 52 652 6 HOH HOH . C 3 HOH A 53 653 35 HOH HOH . C 3 HOH A 54 654 29 HOH HOH . C 3 HOH A 55 655 52 HOH HOH . C 3 HOH A 56 656 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 EX4 . . . B 2 -8.64 19.377 -32.176 1 50.18 ? C7 EX4 501 A 1 HETATM 2 C C6 EX4 . . . B 2 -8.175 18.066 -32.213 1 51.54 ? C6 EX4 501 A 1 HETATM 3 C C1 EX4 . . . B 2 -13.522 16.78 -34.369 1 38.69 ? C1 EX4 501 A 1 HETATM 4 N N1 EX4 . . . B 2 -9.235 17.172 -32.323 1 48.29 ? N1 EX4 501 A 1 HETATM 5 C C5 EX4 . . . B 2 -10.356 17.911 -32.373 1 47.43 ? C5 EX4 501 A 1 HETATM 6 C C4 EX4 . . . B 2 -11.736 17.346 -32.6 1 43.43 ? C4 EX4 501 A 1 HETATM 7 C C3 EX4 . . . B 2 -11.895 15.914 -32.037 1 38.91 ? C3 EX4 501 A 1 HETATM 8 C C2 EX4 . . . B 2 -13.277 15.325 -32.342 1 37.34 ? C2 EX4 501 A 1 HETATM 9 O O EX4 . . . B 2 -15.039 9.064 -33.236 1 32.4 ? O EX4 501 A 1 HETATM 10 C C28 EX4 . . . B 2 -14.917 10.259 -33.371 1 35.49 ? C28 EX4 501 A 1 HETATM 11 N N6 EX4 . . . B 2 -15.77 10.933 -34.313 1 34.91 ? N6 EX4 501 A 1 HETATM 12 C C23 EX4 . . . B 2 -15.541 12.292 -34.66 1 32.05 ? C23 EX4 501 A 1 HETATM 13 N N5 EX4 . . . B 2 -16.553 12.879 -35.332 1 33.2 ? N5 EX4 501 A 1 HETATM 14 C C22 EX4 . . . B 2 -16.465 14.208 -35.557 1 32.56 ? C22 EX4 501 A 1 HETATM 15 N N4 EX4 . . . B 2 -15.469 15.012 -35.158 1 33.02 ? N4 EX4 501 A 1 HETATM 16 C C27 EX4 . . . B 2 -13.842 11.071 -32.648 1 34.85 ? C27 EX4 501 A 1 HETATM 17 C C25 EX4 . . . B 2 -13.274 12.206 -33.52 1 33.62 ? C25 EX4 501 A 1 HETATM 18 C C26 EX4 . . . B 2 -12.392 11.584 -34.631 1 34.5 ? C26 EX4 501 A 1 HETATM 19 C C24 EX4 . . . B 2 -14.402 13.002 -34.183 1 32.63 ? C24 EX4 501 A 1 HETATM 20 C C21 EX4 . . . B 2 -14.443 14.435 -34.441 1 31.58 ? C21 EX4 501 A 1 HETATM 21 N N EX4 . . . B 2 -13.465 15.346 -33.868 1 36.39 ? N EX4 501 A 1 HETATM 22 C C EX4 . . . B 2 -12.131 17.431 -34.095 1 40.02 ? C EX4 501 A 1 HETATM 23 N N2 EX4 . . . B 2 -10.038 19.286 -32.259 1 46.34 ? N2 EX4 501 A 1 HETATM 24 C C8 EX4 . . . B 2 -10.908 20.434 -32.131 1 43.06 ? C8 EX4 501 A 1 HETATM 25 C C9 EX4 . . . B 2 -10.591 21.228 -30.851 1 44.05 ? C9 EX4 501 A 1 HETATM 26 N N3 EX4 . . . B 2 -11.143 20.561 -29.635 1 44.59 ? N3 EX4 501 A 1 HETATM 27 C C13 EX4 . . . B 2 -10.344 19.405 -29.09 1 46.17 ? C13 EX4 501 A 1 HETATM 28 C C12 EX4 . . . B 2 -10.525 19.421 -27.566 1 46.24 ? C12 EX4 501 A 1 HETATM 29 C C11 EX4 . . . B 2 -10.687 20.909 -27.239 1 46.54 ? C11 EX4 501 A 1 HETATM 30 C C10 EX4 . . . B 2 -11.261 21.559 -28.524 1 44.6 ? C10 EX4 501 A 1 HETATM 31 C C14 EX4 . . . B 2 -6.813 17.594 -32.168 1 55.19 ? C14 EX4 501 A 1 HETATM 32 C C19 EX4 . . . B 2 -5.826 18.258 -31.398 1 57.39 ? C19 EX4 501 A 1 HETATM 33 C C18 EX4 . . . B 2 -4.542 17.713 -31.299 1 58.54 ? C18 EX4 501 A 1 HETATM 34 C C17 EX4 . . . B 2 -4.257 16.505 -31.973 1 61.08 ? C17 EX4 501 A 1 HETATM 35 F F EX4 . . . B 2 -3.048 15.98 -31.881 1 62.9 ? F EX4 501 A 1 HETATM 36 C C16 EX4 . . . B 2 -5.244 15.848 -32.739 1 60.7 ? C16 EX4 501 A 1 HETATM 37 C C15 EX4 . . . B 2 -6.514 16.415 -32.848 1 56.42 ? C15 EX4 501 A 1 HETATM 38 C C20 EX4 . . . B 2 -4.984 14.503 -33.374 1 65.09 ? C20 EX4 501 A 1 HETATM 39 F F1 EX4 . . . B 2 -3.728 14.314 -33.762 1 67.46 ? F1 EX4 501 A 1 HETATM 40 F F2 EX4 . . . B 2 -5.26 13.473 -32.535 1 66.56 ? F2 EX4 501 A 1 HETATM 41 F F3 EX4 . . . B 2 -5.705 14.263 -34.475 1 66.52 ? F3 EX4 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #