data_6CDA # _model_server_result.job_id 8HXx1ffqnCMgkVAs-mJVIw _model_server_result.datetime_utc '2024-12-26 22:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6CDA # _exptl.entry_id 6CDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CDA _cell.length_a 31.987 _cell.length_b 31.987 _cell.length_c 183.392 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 84 A ASP 84 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 A ND1 HIS 86 A HIS 86 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A ND1 HIS 97 A HIS 97 1_555 B ZN ZN . A ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A NE2 HIS 100 A HIS 100 1_555 B ZN ZN . A ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 6CDA _atom_sites.fract_transf_matrix[1][1] 0.031263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 PG4 A 1 204 1 PG4 PG4 . F 5 GOL A 1 205 1 GOL GOL . G 5 GOL A 1 206 2 GOL GOL . H 6 HOH A 1 301 29 HOH HOH . H 6 HOH A 2 302 14 HOH HOH . H 6 HOH A 3 303 47 HOH HOH . H 6 HOH A 4 304 11 HOH HOH . H 6 HOH A 5 305 37 HOH HOH . H 6 HOH A 6 306 9 HOH HOH . H 6 HOH A 7 307 2 HOH HOH . H 6 HOH A 8 308 6 HOH HOH . H 6 HOH A 9 309 20 HOH HOH . H 6 HOH A 10 310 10 HOH HOH . H 6 HOH A 11 311 12 HOH HOH . H 6 HOH A 12 312 4 HOH HOH . H 6 HOH A 13 313 1 HOH HOH . H 6 HOH A 14 314 19 HOH HOH . H 6 HOH A 15 315 36 HOH HOH . H 6 HOH A 16 316 5 HOH HOH . H 6 HOH A 17 317 3 HOH HOH . H 6 HOH A 18 318 13 HOH HOH . H 6 HOH A 19 319 46 HOH HOH . H 6 HOH A 20 320 31 HOH HOH . H 6 HOH A 21 321 7 HOH HOH . H 6 HOH A 22 322 16 HOH HOH . H 6 HOH A 23 323 40 HOH HOH . H 6 HOH A 24 324 30 HOH HOH . H 6 HOH A 25 325 27 HOH HOH . H 6 HOH A 26 326 21 HOH HOH . H 6 HOH A 27 327 17 HOH HOH . H 6 HOH A 28 328 8 HOH HOH . H 6 HOH A 29 329 43 HOH HOH . H 6 HOH A 30 330 15 HOH HOH . H 6 HOH A 31 331 23 HOH HOH . H 6 HOH A 32 332 34 HOH HOH . H 6 HOH A 33 333 44 HOH HOH . H 6 HOH A 34 334 26 HOH HOH . H 6 HOH A 35 335 18 HOH HOH . H 6 HOH A 36 336 45 HOH HOH . H 6 HOH A 37 337 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 4 5.721 -5.44 -5.033 1 63.24 ? O1 PG4 204 A 1 HETATM 2 C C1 PG4 . . . E 4 6.092 -6.129 -6.202 1 50.7 ? C1 PG4 204 A 1 HETATM 3 C C2 PG4 . . . E 4 7.42 -5.569 -6.713 1 54.56 ? C2 PG4 204 A 1 HETATM 4 O O2 PG4 . . . E 4 7.241 -4.845 -7.904 1 59.18 ? O2 PG4 204 A 1 HETATM 5 C C3 PG4 . . . E 4 7.979 -5.281 -9.001 1 51.59 ? C3 PG4 204 A 1 HETATM 6 C C4 PG4 . . . E 4 9.479 -5.17 -8.711 1 46.14 ? C4 PG4 204 A 1 HETATM 7 O O3 PG4 . . . E 4 10.163 -6.129 -9.488 1 58.9 ? O3 PG4 204 A 1 HETATM 8 C C5 PG4 . . . E 4 11.256 -5.647 -10.234 1 59.81 ? C5 PG4 204 A 1 HETATM 9 C C6 PG4 . . . E 4 12.514 -5.589 -9.369 1 56.91 ? C6 PG4 204 A 1 HETATM 10 O O4 PG4 . . . E 4 13.009 -6.872 -9.057 1 58.96 ? O4 PG4 204 A 1 HETATM 11 C C7 PG4 . . . E 4 14.08 -7.301 -9.879 1 61.12 ? C7 PG4 204 A 1 HETATM 12 C C8 PG4 . . . E 4 13.746 -8.622 -10.583 1 58.39 ? C8 PG4 204 A 1 HETATM 13 O O5 PG4 . . . E 4 13.322 -9.642 -9.703 1 50.83 ? O5 PG4 204 A 1 HETATM 14 H HO1 PG4 . . . E 4 4.878 -5.333 -5.024 1 75.89 ? HO1 PG4 204 A 1 HETATM 15 H H11 PG4 . . . E 4 5.408 -6.011 -6.88 1 60.85 ? H11 PG4 204 A 1 HETATM 16 H H12 PG4 . . . E 4 6.193 -7.073 -6.004 1 60.85 ? H12 PG4 204 A 1 HETATM 17 H H21 PG4 . . . E 4 7.799 -4.983 -6.039 1 65.47 ? H21 PG4 204 A 1 HETATM 18 H H22 PG4 . . . E 4 8.033 -6.303 -6.876 1 65.47 ? H22 PG4 204 A 1 HETATM 19 H H31 PG4 . . . E 4 7.761 -4.734 -9.772 1 61.9 ? H31 PG4 204 A 1 HETATM 20 H H32 PG4 . . . E 4 7.756 -6.206 -9.19 1 61.9 ? H32 PG4 204 A 1 HETATM 21 H H41 PG4 . . . E 4 9.641 -5.338 -7.77 1 55.37 ? H41 PG4 204 A 1 HETATM 22 H H42 PG4 . . . E 4 9.79 -4.281 -8.942 1 55.37 ? H42 PG4 204 A 1 HETATM 23 H H51 PG4 . . . E 4 11.413 -6.237 -10.988 1 71.78 ? H51 PG4 204 A 1 HETATM 24 H H52 PG4 . . . E 4 11.051 -4.757 -10.562 1 71.78 ? H52 PG4 204 A 1 HETATM 25 H H61 PG4 . . . E 4 12.306 -5.123 -8.544 1 68.29 ? H61 PG4 204 A 1 HETATM 26 H H62 PG4 . . . E 4 13.2 -5.095 -9.845 1 68.29 ? H62 PG4 204 A 1 HETATM 27 H H71 PG4 . . . E 4 14.259 -6.622 -10.548 1 73.34 ? H71 PG4 204 A 1 HETATM 28 H H72 PG4 . . . E 4 14.871 -7.424 -9.332 1 73.34 ? H72 PG4 204 A 1 HETATM 29 H H81 PG4 . . . E 4 14.535 -8.93 -11.055 1 70.07 ? H81 PG4 204 A 1 HETATM 30 H H82 PG4 . . . E 4 13.041 -8.459 -11.229 1 70.07 ? H82 PG4 204 A 1 HETATM 31 H HO5 PG4 . . . E 4 13.775 -10.347 -9.847 1 60.99 ? HO5 PG4 204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #