data_6CDA
#
_model_server_result.job_id            G_BJzhmCfrjjMg4lCuLWTw 
_model_server_result.datetime_utc      '2024-12-26 21:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    6CDA 
#
_exptl.entry_id    6CDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CDA 
_cell.length_a            31.987 
_cell.length_b            31.987 
_cell.length_c            183.392 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 84 A ASP 84 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc2 A ND1 HIS 86 A HIS 86 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc3 A ND1 HIS 97 A HIS 97 1_555 B ZN ZN . A ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc4 A NE2 HIS 100 A HIS 100 1_555 B ZN ZN . A ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6CDA 
_atom_sites.fract_transf_matrix[1][1]    0.031263 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 201 1 ZN ZN . 
C 3 CL A 1 202 1 CL CL . 
D 3 CL A 1 203 2 CL CL . 
E 4 PG4 A 1 204 1 PG4 PG4 . 
F 5 GOL A 1 205 1 GOL GOL . 
G 5 GOL A 1 206 2 GOL GOL . 
H 6 HOH A 1 301 29 HOH HOH . 
H 6 HOH A 2 302 14 HOH HOH . 
H 6 HOH A 3 303 47 HOH HOH . 
H 6 HOH A 4 304 11 HOH HOH . 
H 6 HOH A 5 305 37 HOH HOH . 
H 6 HOH A 6 306 9 HOH HOH . 
H 6 HOH A 7 307 2 HOH HOH . 
H 6 HOH A 8 308 6 HOH HOH . 
H 6 HOH A 9 309 20 HOH HOH . 
H 6 HOH A 10 310 10 HOH HOH . 
H 6 HOH A 11 311 12 HOH HOH . 
H 6 HOH A 12 312 4 HOH HOH . 
H 6 HOH A 13 313 1 HOH HOH . 
H 6 HOH A 14 314 19 HOH HOH . 
H 6 HOH A 15 315 36 HOH HOH . 
H 6 HOH A 16 316 5 HOH HOH . 
H 6 HOH A 17 317 3 HOH HOH . 
H 6 HOH A 18 318 13 HOH HOH . 
H 6 HOH A 19 319 46 HOH HOH . 
H 6 HOH A 20 320 31 HOH HOH . 
H 6 HOH A 21 321 7 HOH HOH . 
H 6 HOH A 22 322 16 HOH HOH . 
H 6 HOH A 23 323 40 HOH HOH . 
H 6 HOH A 24 324 30 HOH HOH . 
H 6 HOH A 25 325 27 HOH HOH . 
H 6 HOH A 26 326 21 HOH HOH . 
H 6 HOH A 27 327 17 HOH HOH . 
H 6 HOH A 28 328 8 HOH HOH . 
H 6 HOH A 29 329 43 HOH HOH . 
H 6 HOH A 30 330 15 HOH HOH . 
H 6 HOH A 31 331 23 HOH HOH . 
H 6 HOH A 32 332 34 HOH HOH . 
H 6 HOH A 33 333 44 HOH HOH . 
H 6 HOH A 34 334 26 HOH HOH . 
H 6 HOH A 35 335 18 HOH HOH . 
H 6 HOH A 36 336 45 HOH HOH . 
H 6 HOH A 37 337 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 2.504 0.035 -21.789 1 49.98 ? C1 GOL 206 A 1 
HETATM 2 O O1 GOL . . . G 5 3.726 -0.349 -21.203 1 51.16 ? O1 GOL 206 A 1 
HETATM 3 C C2 GOL . . . G 5 1.335 -0.328 -20.871 1 59.03 ? C2 GOL 206 A 1 
HETATM 4 O O2 GOL . . . G 5 1.781 -0.784 -19.608 1 59.87 ? O2 GOL 206 A 1 
HETATM 5 C C3 GOL . . . G 5 0.396 0.873 -20.702 1 59.54 ? C3 GOL 206 A 1 
HETATM 6 O O3 GOL . . . G 5 1.054 2.009 -20.163 1 60.47 ? O3 GOL 206 A 1 
HETATM 7 H H11 GOL . . . G 5 2.507 1.11 -21.969 1 59.98 ? H11 GOL 206 A 1 
HETATM 8 H H12 GOL . . . G 5 2.384 -0.467 -22.749 1 59.98 ? H12 GOL 206 A 1 
HETATM 9 H HO1 GOL . . . G 5 4.459 -0.171 -21.829 1 61.39 ? HO1 GOL 206 A 1 
HETATM 10 H H2 GOL . . . G 5 0.77 -1.125 -21.354 1 70.84 ? H2 GOL 206 A 1 
HETATM 11 H HO2 GOL . . . G 5 2.253 -0.059 -19.147 1 71.84 ? HO2 GOL 206 A 1 
HETATM 12 H H31 GOL . . . G 5 -0.029 1.133 -21.671 1 71.44 ? H31 GOL 206 A 1 
HETATM 13 H H32 GOL . . . G 5 -0.427 0.593 -20.045 1 71.44 ? H32 GOL 206 A 1 
HETATM 14 H HO3 GOL . . . G 5 1.065 2.727 -20.831 1 72.56 ? HO3 GOL 206 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#