data_6CDF # _model_server_result.job_id 7QqYHBX6rkm_dlOPl-qgMg _model_server_result.datetime_utc '2024-11-25 09:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6CDF # _exptl.entry_id 6CDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CDF _cell.length_a 88.657 _cell.length_b 88.657 _cell.length_c 163.914 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 A,B,C,D,E 1 4 A,B,C,D,E 2 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_875 -x+3,-y+2,z -1 0 0 0 -1 0 0 0 1 177.314 153.558428 0 3 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 153.558428 0 4 'crystal symmetry operation' 11_755 -x+y+2,y,-z -1 0 0 0 1 0 0 0 -1 177.314 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C CA CA . A CA 402 1_555 D O1 FMT . A FMT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc2 C CA CA . A CA 402 1_555 D O2 FMT . A FMT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc3 C CA CA . A CA 402 1_555 E O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 C CA CA . A CA 402 1_555 E O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc5 C CA CA . A CA 402 1_555 E O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 6CDF _atom_sites.fract_transf_matrix[1][1] 0.011279 _atom_sites.fract_transf_matrix[1][2] 0.006512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 401 401 NAI NAI . C 3 CA A 1 402 1 CA CA . D 4 FMT A 1 403 2 FMT FMT . E 5 HOH A 1 501 108 HOH HOH . E 5 HOH A 2 502 7 HOH HOH . E 5 HOH A 3 503 136 HOH HOH . E 5 HOH A 4 504 133 HOH HOH . E 5 HOH A 5 505 65 HOH HOH . E 5 HOH A 6 506 64 HOH HOH . E 5 HOH A 7 507 23 HOH HOH . E 5 HOH A 8 508 80 HOH HOH . E 5 HOH A 9 509 113 HOH HOH . E 5 HOH A 10 510 71 HOH HOH . E 5 HOH A 11 511 69 HOH HOH . E 5 HOH A 12 512 30 HOH HOH . E 5 HOH A 13 513 11 HOH HOH . E 5 HOH A 14 514 128 HOH HOH . E 5 HOH A 15 515 139 HOH HOH . E 5 HOH A 16 516 36 HOH HOH . E 5 HOH A 17 517 137 HOH HOH . E 5 HOH A 18 518 60 HOH HOH . E 5 HOH A 19 519 135 HOH HOH . E 5 HOH A 20 520 40 HOH HOH . E 5 HOH A 21 521 15 HOH HOH . E 5 HOH A 22 522 42 HOH HOH . E 5 HOH A 23 523 61 HOH HOH . E 5 HOH A 24 524 39 HOH HOH . E 5 HOH A 25 525 46 HOH HOH . E 5 HOH A 26 526 58 HOH HOH . E 5 HOH A 27 527 26 HOH HOH . E 5 HOH A 28 528 118 HOH HOH . E 5 HOH A 29 529 45 HOH HOH . E 5 HOH A 30 530 13 HOH HOH . E 5 HOH A 31 531 28 HOH HOH . E 5 HOH A 32 532 12 HOH HOH . E 5 HOH A 33 533 50 HOH HOH . E 5 HOH A 34 534 77 HOH HOH . E 5 HOH A 35 535 48 HOH HOH . E 5 HOH A 36 536 79 HOH HOH . E 5 HOH A 37 537 16 HOH HOH . E 5 HOH A 38 538 32 HOH HOH . E 5 HOH A 39 539 37 HOH HOH . E 5 HOH A 40 540 126 HOH HOH . E 5 HOH A 41 541 125 HOH HOH . E 5 HOH A 42 542 17 HOH HOH . E 5 HOH A 43 543 98 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 90 HOH HOH . E 5 HOH A 46 546 74 HOH HOH . E 5 HOH A 47 547 103 HOH HOH . E 5 HOH A 48 548 31 HOH HOH . E 5 HOH A 49 549 19 HOH HOH . E 5 HOH A 50 550 121 HOH HOH . E 5 HOH A 51 551 138 HOH HOH . E 5 HOH A 52 552 56 HOH HOH . E 5 HOH A 53 553 33 HOH HOH . E 5 HOH A 54 554 127 HOH HOH . E 5 HOH A 55 555 38 HOH HOH . E 5 HOH A 56 556 100 HOH HOH . E 5 HOH A 57 557 27 HOH HOH . E 5 HOH A 58 558 85 HOH HOH . E 5 HOH A 59 559 107 HOH HOH . E 5 HOH A 60 560 6 HOH HOH . E 5 HOH A 61 561 99 HOH HOH . E 5 HOH A 62 562 47 HOH HOH . E 5 HOH A 63 563 34 HOH HOH . E 5 HOH A 64 564 14 HOH HOH . E 5 HOH A 65 565 120 HOH HOH . E 5 HOH A 66 566 105 HOH HOH . E 5 HOH A 67 567 20 HOH HOH . E 5 HOH A 68 568 57 HOH HOH . E 5 HOH A 69 569 92 HOH HOH . E 5 HOH A 70 570 78 HOH HOH . E 5 HOH A 71 571 8 HOH HOH . E 5 HOH A 72 572 86 HOH HOH . E 5 HOH A 73 573 72 HOH HOH . E 5 HOH A 74 574 114 HOH HOH . E 5 HOH A 75 575 87 HOH HOH . E 5 HOH A 76 576 88 HOH HOH . E 5 HOH A 77 577 63 HOH HOH . E 5 HOH A 78 578 91 HOH HOH . E 5 HOH A 79 579 116 HOH HOH . E 5 HOH A 80 580 66 HOH HOH . E 5 HOH A 81 581 95 HOH HOH . E 5 HOH A 82 582 130 HOH HOH . E 5 HOH A 83 583 10 HOH HOH . E 5 HOH A 84 584 3 HOH HOH . E 5 HOH A 85 585 115 HOH HOH . E 5 HOH A 86 586 96 HOH HOH . E 5 HOH A 87 587 81 HOH HOH . E 5 HOH A 88 588 109 HOH HOH . E 5 HOH A 89 589 24 HOH HOH . E 5 HOH A 90 590 97 HOH HOH . E 5 HOH A 91 591 62 HOH HOH . E 5 HOH A 92 592 112 HOH HOH . E 5 HOH A 93 593 76 HOH HOH . E 5 HOH A 94 594 122 HOH HOH . E 5 HOH A 95 595 43 HOH HOH . E 5 HOH A 96 596 73 HOH HOH . E 5 HOH A 97 597 141 HOH HOH . E 5 HOH A 98 598 52 HOH HOH . E 5 HOH A 99 599 75 HOH HOH . E 5 HOH A 100 600 119 HOH HOH . E 5 HOH A 101 601 84 HOH HOH . E 5 HOH A 102 602 110 HOH HOH . E 5 HOH A 103 603 94 HOH HOH . E 5 HOH A 104 604 93 HOH HOH . E 5 HOH A 105 605 129 HOH HOH . E 5 HOH A 106 606 106 HOH HOH . E 5 HOH A 107 607 111 HOH HOH . E 5 HOH A 108 608 131 HOH HOH . E 5 HOH A 109 609 132 HOH HOH . E 5 HOH A 110 610 123 HOH HOH . E 5 HOH A 111 611 82 HOH HOH . E 5 HOH A 112 612 83 HOH HOH . E 5 HOH A 113 613 70 HOH HOH . E 5 HOH A 114 614 124 HOH HOH . E 5 HOH A 115 615 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 87.16 58.285 -15.664 1 46.97 ? C FMT 403 A 1 HETATM 2 O O1 FMT . . . D 4 87.189 59.507 -15.819 1 45.36 ? O1 FMT 403 A 1 HETATM 3 O O2 FMT . . . D 4 86.953 57.518 -16.605 1 49.26 ? O2 FMT 403 A 1 HETATM 4 H H FMT . . . D 4 87.317 57.846 -14.679 1 56.36 ? H FMT 403 A 1 HETATM 5 H HO2 FMT . . . D 4 86.807 57.875 -17.506 1 59.11 ? HO2 FMT 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #