data_6CDN # _model_server_result.job_id 0fm9amwodXtrUYRa7x8Z8A _model_server_result.datetime_utc '2025-01-07 15:15:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6CDN # _exptl.entry_id 6CDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CDN _cell.length_a 131.326 _cell.length_b 131.326 _cell.length_c 34.188 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 93 1_555 A CE1 3CT 157 A 3CT 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 A C LEU 156 A LEU 156 1_555 A N 3CT 157 A 3CT 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C 3CT 157 A 3CT 157 1_555 A N SER 158 A SER 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A NE2 HIS 140 A HIS 140 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 B N CYS . A CYS 301 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 B SG CYS . A CYS 301 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc6 C FE FE2 . A FE2 302 1_555 I O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 94 n n N H CYS sing 95 n n N H2 CYS sing 96 n n CA C CYS sing 97 n n CA CB CYS sing 98 n n CA HA CYS sing 99 n n C O CYS doub 100 n n C OXT CYS sing 101 n n CB SG CYS sing 102 n n CB HB2 CYS sing 103 n n CB HB3 CYS sing 104 n n SG HG CYS sing 105 n n OXT HXT CYS sing 106 n n # _atom_sites.entry_id 6CDN _atom_sites.fract_transf_matrix[1][1] 0.007615 _atom_sites.fract_transf_matrix[1][2] 0.004396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYS A 1 301 192 CYS CYS . C 3 FE2 A 1 302 201 FE2 FE2 . D 4 SO4 A 1 303 201 SO4 SO4 . E 4 SO4 A 1 304 202 SO4 SO4 . F 4 SO4 A 1 305 203 SO4 SO4 . G 5 GOL A 1 306 301 GOL GOL . H 5 GOL A 1 307 302 GOL GOL . I 6 HOH A 1 401 74 HOH HOH . I 6 HOH A 2 402 96 HOH HOH . I 6 HOH A 3 403 36 HOH HOH . I 6 HOH A 4 404 34 HOH HOH . I 6 HOH A 5 405 75 HOH HOH . I 6 HOH A 6 406 50 HOH HOH . I 6 HOH A 7 407 18 HOH HOH . I 6 HOH A 8 408 1 HOH HOH . I 6 HOH A 9 409 78 HOH HOH . I 6 HOH A 10 410 39 HOH HOH . I 6 HOH A 11 411 56 HOH HOH . I 6 HOH A 12 412 58 HOH HOH . I 6 HOH A 13 413 10 HOH HOH . I 6 HOH A 14 414 28 HOH HOH . I 6 HOH A 15 415 47 HOH HOH . I 6 HOH A 16 416 27 HOH HOH . I 6 HOH A 17 417 95 HOH HOH . I 6 HOH A 18 418 66 HOH HOH . I 6 HOH A 19 419 59 HOH HOH . I 6 HOH A 20 420 86 HOH HOH . I 6 HOH A 21 421 35 HOH HOH . I 6 HOH A 22 422 7 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 4 HOH HOH . I 6 HOH A 25 425 33 HOH HOH . I 6 HOH A 26 426 17 HOH HOH . I 6 HOH A 27 427 8 HOH HOH . I 6 HOH A 28 428 44 HOH HOH . I 6 HOH A 29 429 22 HOH HOH . I 6 HOH A 30 430 24 HOH HOH . I 6 HOH A 31 431 71 HOH HOH . I 6 HOH A 32 432 89 HOH HOH . I 6 HOH A 33 433 30 HOH HOH . I 6 HOH A 34 434 16 HOH HOH . I 6 HOH A 35 435 6 HOH HOH . I 6 HOH A 36 436 63 HOH HOH . I 6 HOH A 37 437 51 HOH HOH . I 6 HOH A 38 438 54 HOH HOH . I 6 HOH A 39 439 97 HOH HOH . I 6 HOH A 40 440 49 HOH HOH . I 6 HOH A 41 441 19 HOH HOH . I 6 HOH A 42 442 5 HOH HOH . I 6 HOH A 43 443 11 HOH HOH . I 6 HOH A 44 444 52 HOH HOH . I 6 HOH A 45 445 105 HOH HOH . I 6 HOH A 46 446 65 HOH HOH . I 6 HOH A 47 447 53 HOH HOH . I 6 HOH A 48 448 21 HOH HOH . I 6 HOH A 49 449 80 HOH HOH . I 6 HOH A 50 450 40 HOH HOH . I 6 HOH A 51 451 31 HOH HOH . I 6 HOH A 52 452 37 HOH HOH . I 6 HOH A 53 453 111 HOH HOH . I 6 HOH A 54 454 46 HOH HOH . I 6 HOH A 55 455 103 HOH HOH . I 6 HOH A 56 456 60 HOH HOH . I 6 HOH A 57 457 9 HOH HOH . I 6 HOH A 58 458 104 HOH HOH . I 6 HOH A 59 459 69 HOH HOH . I 6 HOH A 60 460 79 HOH HOH . I 6 HOH A 61 461 68 HOH HOH . I 6 HOH A 62 462 29 HOH HOH . I 6 HOH A 63 463 45 HOH HOH . I 6 HOH A 64 464 20 HOH HOH . I 6 HOH A 65 465 2 HOH HOH . I 6 HOH A 66 466 73 HOH HOH . I 6 HOH A 67 467 77 HOH HOH . I 6 HOH A 68 468 14 HOH HOH . I 6 HOH A 69 469 3 HOH HOH . I 6 HOH A 70 470 115 HOH HOH . I 6 HOH A 71 471 25 HOH HOH . I 6 HOH A 72 472 70 HOH HOH . I 6 HOH A 73 473 12 HOH HOH . I 6 HOH A 74 474 42 HOH HOH . I 6 HOH A 75 475 102 HOH HOH . I 6 HOH A 76 476 57 HOH HOH . I 6 HOH A 77 477 38 HOH HOH . I 6 HOH A 78 478 98 HOH HOH . I 6 HOH A 79 479 83 HOH HOH . I 6 HOH A 80 480 93 HOH HOH . I 6 HOH A 81 481 13 HOH HOH . I 6 HOH A 82 482 94 HOH HOH . I 6 HOH A 83 483 116 HOH HOH . I 6 HOH A 84 484 48 HOH HOH . I 6 HOH A 85 485 108 HOH HOH . I 6 HOH A 86 486 91 HOH HOH . I 6 HOH A 87 487 26 HOH HOH . I 6 HOH A 88 488 90 HOH HOH . I 6 HOH A 89 489 41 HOH HOH . I 6 HOH A 90 490 32 HOH HOH . I 6 HOH A 91 491 113 HOH HOH . I 6 HOH A 92 492 82 HOH HOH . I 6 HOH A 93 493 55 HOH HOH . I 6 HOH A 94 494 61 HOH HOH . I 6 HOH A 95 495 107 HOH HOH . I 6 HOH A 96 496 88 HOH HOH . I 6 HOH A 97 497 62 HOH HOH . I 6 HOH A 98 498 112 HOH HOH . I 6 HOH A 99 499 84 HOH HOH . I 6 HOH A 100 500 101 HOH HOH . I 6 HOH A 101 501 76 HOH HOH . I 6 HOH A 102 502 110 HOH HOH . I 6 HOH A 103 503 85 HOH HOH . I 6 HOH A 104 504 117 HOH HOH . I 6 HOH A 105 505 114 HOH HOH . I 6 HOH A 106 506 92 HOH HOH . I 6 HOH A 107 507 109 HOH HOH . I 6 HOH A 108 508 100 HOH HOH . I 6 HOH A 109 509 81 HOH HOH . I 6 HOH A 110 510 72 HOH HOH . I 6 HOH A 111 511 106 HOH HOH . I 6 HOH A 112 512 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . B 2 41.315 42.093 33.96 1 37.85 ? N CYS 301 A 1 HETATM 2 C CA CYS . . . B 2 40.529 41.847 32.76 1 42.6 ? CA CYS 301 A 1 HETATM 3 C C CYS . . . B 2 41.019 40.572 32.094 1 46.28 ? C CYS 301 A 1 HETATM 4 O O CYS . . . B 2 40.43 40.069 31.134 1 47.06 ? O CYS 301 A 1 HETATM 5 C CB CYS . . . B 2 40.623 43.023 31.783 1 35.66 ? CB CYS 301 A 1 HETATM 6 S SG CYS . . . B 2 40.123 44.634 32.469 1 42.89 ? SG CYS 301 A 1 HETATM 7 O OXT CYS . . . B 2 42.021 40.012 32.525 1 59 ? OXT CYS 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #