data_6CDR # _model_server_result.job_id rfC66DJZIZHxg2Q6_N6SmA _model_server_result.datetime_utc '2024-11-25 11:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6CDR # _exptl.entry_id 6CDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CDR _cell.length_a 89.218 _cell.length_b 89.218 _cell.length_c 164.233 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 1 2 A,B,C,D,E,F,G,H,I,J 1 3 A,B,C,D,E,F,G,H,I,J 1 4 A,B,C,D,E,F,G,H,I,J 2 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_875 -x+3,-y+2,z -1 0 0 0 -1 0 0 0 1 178.436 154.530109 0 3 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 154.530109 0 4 'crystal symmetry operation' 11_755 -x+y+2,y,-z -1 0 0 0 1 0 0 0 -1 178.436 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6CDR _atom_sites.fract_transf_matrix[1][1] 0.011209 _atom_sites.fract_transf_matrix[1][2] 0.006471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 401 401 NAI NAI . C 3 CL A 1 402 1 CL CL . D 3 CL A 1 403 2 CL CL . E 4 EDO A 1 404 1 EDO EDO . F 4 EDO A 1 405 4 EDO EDO . G 4 EDO A 1 406 6 EDO EDO . H 4 EDO A 1 407 7 EDO EDO . I 5 FMT A 1 408 2 FMT FMT . J 6 HOH A 1 501 129 HOH HOH . J 6 HOH A 2 502 90 HOH HOH . J 6 HOH A 3 503 127 HOH HOH . J 6 HOH A 4 504 93 HOH HOH . J 6 HOH A 5 505 19 HOH HOH . J 6 HOH A 6 506 96 HOH HOH . J 6 HOH A 7 507 36 HOH HOH . J 6 HOH A 8 508 77 HOH HOH . J 6 HOH A 9 509 112 HOH HOH . J 6 HOH A 10 510 94 HOH HOH . J 6 HOH A 11 511 3 HOH HOH . J 6 HOH A 12 512 123 HOH HOH . J 6 HOH A 13 513 25 HOH HOH . J 6 HOH A 14 514 32 HOH HOH . J 6 HOH A 15 515 41 HOH HOH . J 6 HOH A 16 516 12 HOH HOH . J 6 HOH A 17 517 52 HOH HOH . J 6 HOH A 18 518 18 HOH HOH . J 6 HOH A 19 519 106 HOH HOH . J 6 HOH A 20 520 4 HOH HOH . J 6 HOH A 21 521 53 HOH HOH . J 6 HOH A 22 522 2 HOH HOH . J 6 HOH A 23 523 98 HOH HOH . J 6 HOH A 24 524 26 HOH HOH . J 6 HOH A 25 525 75 HOH HOH . J 6 HOH A 26 526 79 HOH HOH . J 6 HOH A 27 527 11 HOH HOH . J 6 HOH A 28 528 121 HOH HOH . J 6 HOH A 29 529 37 HOH HOH . J 6 HOH A 30 530 115 HOH HOH . J 6 HOH A 31 531 48 HOH HOH . J 6 HOH A 32 532 87 HOH HOH . J 6 HOH A 33 533 54 HOH HOH . J 6 HOH A 34 534 89 HOH HOH . J 6 HOH A 35 535 49 HOH HOH . J 6 HOH A 36 536 29 HOH HOH . J 6 HOH A 37 537 6 HOH HOH . J 6 HOH A 38 538 105 HOH HOH . J 6 HOH A 39 539 16 HOH HOH . J 6 HOH A 40 540 65 HOH HOH . J 6 HOH A 41 541 63 HOH HOH . J 6 HOH A 42 542 109 HOH HOH . J 6 HOH A 43 543 13 HOH HOH . J 6 HOH A 44 544 111 HOH HOH . J 6 HOH A 45 545 20 HOH HOH . J 6 HOH A 46 546 101 HOH HOH . J 6 HOH A 47 547 92 HOH HOH . J 6 HOH A 48 548 100 HOH HOH . J 6 HOH A 49 549 97 HOH HOH . J 6 HOH A 50 550 71 HOH HOH . J 6 HOH A 51 551 68 HOH HOH . J 6 HOH A 52 552 91 HOH HOH . J 6 HOH A 53 553 122 HOH HOH . J 6 HOH A 54 554 8 HOH HOH . J 6 HOH A 55 555 86 HOH HOH . J 6 HOH A 56 556 102 HOH HOH . J 6 HOH A 57 557 17 HOH HOH . J 6 HOH A 58 558 46 HOH HOH . J 6 HOH A 59 559 103 HOH HOH . J 6 HOH A 60 560 113 HOH HOH . J 6 HOH A 61 561 44 HOH HOH . J 6 HOH A 62 562 99 HOH HOH . J 6 HOH A 63 563 73 HOH HOH . J 6 HOH A 64 564 39 HOH HOH . J 6 HOH A 65 565 35 HOH HOH . J 6 HOH A 66 566 117 HOH HOH . J 6 HOH A 67 567 21 HOH HOH . J 6 HOH A 68 568 9 HOH HOH . J 6 HOH A 69 569 45 HOH HOH . J 6 HOH A 70 570 116 HOH HOH . J 6 HOH A 71 571 40 HOH HOH . J 6 HOH A 72 572 130 HOH HOH . J 6 HOH A 73 573 108 HOH HOH . J 6 HOH A 74 574 7 HOH HOH . J 6 HOH A 75 575 55 HOH HOH . J 6 HOH A 76 576 22 HOH HOH . J 6 HOH A 77 577 23 HOH HOH . J 6 HOH A 78 578 5 HOH HOH . J 6 HOH A 79 579 57 HOH HOH . J 6 HOH A 80 580 74 HOH HOH . J 6 HOH A 81 581 83 HOH HOH . J 6 HOH A 82 582 69 HOH HOH . J 6 HOH A 83 583 33 HOH HOH . J 6 HOH A 84 584 114 HOH HOH . J 6 HOH A 85 585 119 HOH HOH . J 6 HOH A 86 586 34 HOH HOH . J 6 HOH A 87 587 70 HOH HOH . J 6 HOH A 88 588 118 HOH HOH . J 6 HOH A 89 589 125 HOH HOH . J 6 HOH A 90 590 95 HOH HOH . J 6 HOH A 91 591 85 HOH HOH . J 6 HOH A 92 592 24 HOH HOH . J 6 HOH A 93 593 81 HOH HOH . J 6 HOH A 94 594 128 HOH HOH . J 6 HOH A 95 595 124 HOH HOH . J 6 HOH A 96 596 80 HOH HOH . J 6 HOH A 97 597 66 HOH HOH . J 6 HOH A 98 598 110 HOH HOH . J 6 HOH A 99 599 126 HOH HOH . J 6 HOH A 100 600 107 HOH HOH . J 6 HOH A 101 601 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 70.501 56.38 10.456 1 36.77 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 4 70.474 57.627 9.751 1 42.51 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 4 70.051 55.267 9.522 1 34.87 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 4 68.796 55.645 8.946 1 40.58 ? O2 EDO 404 A 1 HETATM 5 H H11 EDO . . . E 4 71.514 56.178 10.812 1 44.12 ? H11 EDO 404 A 1 HETATM 6 H H12 EDO . . . E 4 69.837 56.429 11.321 1 44.12 ? H12 EDO 404 A 1 HETATM 7 H HO1 EDO . . . E 4 70.76 58.337 10.341 1 51.01 ? HO1 EDO 404 A 1 HETATM 8 H H21 EDO . . . E 4 70.793 55.116 8.735 1 41.84 ? H21 EDO 404 A 1 HETATM 9 H H22 EDO . . . E 4 69.941 54.334 10.078 1 41.84 ? H22 EDO 404 A 1 HETATM 10 H HO2 EDO . . . E 4 68.493 54.949 8.348 1 48.7 ? HO2 EDO 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #