data_6CDU # _model_server_result.job_id pNNG5MXQc6t5TZEYzqtPNw _model_server_result.datetime_utc '2024-10-19 09:29:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":500}' # _entry.id 6CDU # _exptl.entry_id 6CDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3a,5a)-3-Hydroxypregnane-11,20-dione _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.91 _cell.angle_gamma 90 _cell.entry_id 6CDU _cell.length_a 108.202 _cell.length_b 263.529 _cell.length_c 109.16 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O 1 1 F,G,H,I,J,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H32 O3' _chem_comp.formula_weight 332.477 _chem_comp.id EY4 _chem_comp.mon_nstd_flag . _chem_comp.name (3a,5a)-3-Hydroxypregnane-11,20-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms alphaxalone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 EY4 sing 83 n n C2 C1 EY4 sing 84 n n C3 C4 EY4 sing 85 n n C3 O3 EY4 sing 86 n n C4 C5 EY4 sing 87 n n C1 C10 EY4 sing 88 n n C19 C10 EY4 sing 89 n n C5 C10 EY4 sing 90 n n C5 C6 EY4 sing 91 n n C10 C9 EY4 sing 92 n n C6 C7 EY4 sing 93 n n O11 C11 EY4 doub 94 n n C9 C11 EY4 sing 95 n n C9 C8 EY4 sing 96 n n C11 C12 EY4 sing 97 n n C7 C8 EY4 sing 98 n n C8 C14 EY4 sing 99 n n C18 C13 EY4 sing 100 n n C12 C13 EY4 sing 101 n n C14 C13 EY4 sing 102 n n C14 C15 EY4 sing 103 n n C13 C17 EY4 sing 104 n n C15 C16 EY4 sing 105 n n C17 C16 EY4 sing 106 n n C17 C20 EY4 sing 107 n n C20 O20 EY4 doub 108 n n C20 C21 EY4 sing 109 n n C12 H1 EY4 sing 110 n n C12 H2 EY4 sing 111 n n C14 H3 EY4 sing 112 n n C15 H4 EY4 sing 113 n n C15 H5 EY4 sing 114 n n C1 H6 EY4 sing 115 n n C1 H7 EY4 sing 116 n n C16 H8 EY4 sing 117 n n C16 H9 EY4 sing 118 n n C17 H10 EY4 sing 119 n n C18 H11 EY4 sing 120 n n C18 H12 EY4 sing 121 n n C18 H13 EY4 sing 122 n n C19 H14 EY4 sing 123 n n C19 H15 EY4 sing 124 n n C19 H16 EY4 sing 125 n n C2 H17 EY4 sing 126 n n C2 H18 EY4 sing 127 n n C21 H19 EY4 sing 128 n n C21 H20 EY4 sing 129 n n C21 H21 EY4 sing 130 n n C3 H22 EY4 sing 131 n n C4 H23 EY4 sing 132 n n C4 H24 EY4 sing 133 n n C5 H25 EY4 sing 134 n n C6 H26 EY4 sing 135 n n C6 H27 EY4 sing 136 n n C7 H28 EY4 sing 137 n n C7 H29 EY4 sing 138 n n C8 H30 EY4 sing 139 n n C9 H31 EY4 sing 140 n n O3 H32 EY4 sing 141 n n # _atom_sites.entry_id 6CDU _atom_sites.fract_transf_matrix[1][1] 0.009242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 EY4 A 1 501 500 EY4 XLO . L 2 EY4 A 1 502 500 EY4 XLO . M 2 EY4 B 1 500 500 EY4 XLO . N 2 EY4 D 1 500 500 EY4 XLO . O 2 EY4 E 1 500 500 EY4 XLO . P 2 EY4 F 1 500 500 EY4 XLO . Q 2 EY4 G 1 501 500 EY4 XLO . R 2 EY4 G 1 502 500 EY4 XLO . S 2 EY4 H 1 500 500 EY4 XLO . T 2 EY4 I 1 500 500 EY4 XLO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EY4 . . . N 2 -11.759 24.043 50.079 1 98.78 ? C10 EY4 500 D 1 HETATM 2 C C11 EY4 . . . N 2 -10.437 24.288 52.381 1 122.26 ? C11 EY4 500 D 1 HETATM 3 C C12 EY4 . . . N 2 -10.38 24.953 53.753 1 115.06 ? C12 EY4 500 D 1 HETATM 4 C C13 EY4 . . . N 2 -10.367 26.483 53.625 1 128.08 ? C13 EY4 500 D 1 HETATM 5 C C14 EY4 . . . N 2 -11.551 26.905 52.738 1 126.47 ? C14 EY4 500 D 1 HETATM 6 C C15 EY4 . . . N 2 -11.652 28.424 52.937 1 116.87 ? C15 EY4 500 D 1 HETATM 7 C C1 EY4 . . . N 2 -12.219 22.568 50.32 1 104.52 ? C1 EY4 500 D 1 HETATM 8 C C16 EY4 . . . N 2 -11.279 28.616 54.421 1 108.88 ? C16 EY4 500 D 1 HETATM 9 C C17 EY4 . . . N 2 -10.733 27.252 54.914 1 130.15 ? C17 EY4 500 D 1 HETATM 10 C C18 EY4 . . . N 2 -8.988 26.929 53.073 1 136.39 ? C18 EY4 500 D 1 HETATM 11 C C19 EY4 . . . N 2 -10.468 24.058 49.214 1 84.92 ? C19 EY4 500 D 1 HETATM 12 C C2 EY4 . . . N 2 -12.8 21.865 49.089 1 101.48 ? C2 EY4 500 D 1 HETATM 13 C C20 EY4 . . . N 2 -9.614 27.426 55.896 1 153.68 ? C20 EY4 500 D 1 HETATM 14 C C21 EY4 . . . N 2 -9.552 26.425 57.016 1 157.99 ? C21 EY4 500 D 1 HETATM 15 C C3 EY4 . . . N 2 -13.912 22.683 48.432 1 99.79 ? C3 EY4 500 D 1 HETATM 16 C C4 EY4 . . . N 2 -13.385 24.065 48.059 1 103.12 ? C4 EY4 500 D 1 HETATM 17 C C5 EY4 . . . N 2 -12.931 24.779 49.344 1 110.05 ? C5 EY4 500 D 1 HETATM 18 C C6 EY4 . . . N 2 -12.625 26.249 49.071 1 106.48 ? C6 EY4 500 D 1 HETATM 19 C C7 EY4 . . . N 2 -12.444 26.999 50.389 1 124.03 ? C7 EY4 500 D 1 HETATM 20 C C8 EY4 . . . N 2 -11.422 26.343 51.322 1 139.67 ? C8 EY4 500 D 1 HETATM 21 C C9 EY4 . . . N 2 -11.556 24.789 51.449 1 123.97 ? C9 EY4 500 D 1 HETATM 22 O O11 EY4 . . . N 2 -9.78 23.263 52.183 1 133.86 ? O11 EY4 500 D 1 HETATM 23 O O20 EY4 . . . N 2 -8.992 28.483 55.964 1 153.58 ? O20 EY4 500 D 1 HETATM 24 O O3 EY4 . . . N 2 -14.976 22.863 49.368 1 105.18 ? O3 EY4 500 D 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #