data_6CGC # _model_server_result.job_id lKqGCEfAqLpT9t4NwaObow _model_server_result.datetime_utc '2024-11-18 00:39:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6CGC # _exptl.entry_id 6CGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.555 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[(9beta,14beta,16alpha,17alpha)-3,17-dihydroxy-2-methoxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CGC _cell.length_a 41.75 _cell.length_b 107.98 _cell.length_c 115.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C27 H33 N O4' _chem_comp.formula_weight 435.555 _chem_comp.id F0A _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[(9beta,14beta,16alpha,17alpha)-3,17-dihydroxy-2-methoxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C3 F0A sing 83 n n C5 C3 F0A doub 84 n y C5 C6 F0A sing 85 n y C7 C8 F0A sing 86 n n C7 C6 F0A sing 87 n n C3 C2 F0A sing 88 n y C8 C9 F0A sing 89 n n C6 C11 F0A doub 90 n y C2 O31 F0A sing 91 n n C2 C1 F0A doub 92 n y C11 C1 F0A sing 93 n y C11 C10 F0A sing 94 n n O31 C32 F0A sing 95 n n C26 C25 F0A doub 96 n y C26 C27 F0A sing 97 n y C9 C10 F0A sing 98 n n C9 C15 F0A sing 99 n n C25 C24 F0A sing 100 n y C10 C12 F0A sing 101 n n C16 C15 F0A sing 102 n n C16 C17 F0A sing 103 n n C15 C14 F0A sing 104 n n C27 C22 F0A doub 105 n y C24 C28 F0A sing 106 n n C24 C23 F0A doub 107 n y O29 C28 F0A doub 108 n n C28 N30 F0A sing 109 n n C22 C23 F0A sing 110 n y C22 C21 F0A sing 111 n n C17 C21 F0A sing 112 n n C17 C18 F0A sing 113 n n C12 C13 F0A sing 114 n n C14 C13 F0A sing 115 n n C14 C18 F0A sing 116 n n C14 C20 F0A sing 117 n n C18 O19 F0A sing 118 n n N30 H1 F0A sing 119 n n N30 H2 F0A sing 120 n n C25 H3 F0A sing 121 n n C26 H4 F0A sing 122 n n C27 H5 F0A sing 123 n n C23 H6 F0A sing 124 n n C21 H7 F0A sing 125 n n C21 H8 F0A sing 126 n n C17 H9 F0A sing 127 n n C18 H10 F0A sing 128 n n O19 H11 F0A sing 129 n n C20 H12 F0A sing 130 n n C20 H13 F0A sing 131 n n C20 H14 F0A sing 132 n n C15 H15 F0A sing 133 n n C16 H16 F0A sing 134 n n C16 H17 F0A sing 135 n n C13 H18 F0A sing 136 n n C13 H19 F0A sing 137 n n C12 H20 F0A sing 138 n n C12 H21 F0A sing 139 n n C10 H22 F0A sing 140 n n C7 H23 F0A sing 141 n n C7 H24 F0A sing 142 n n C8 H25 F0A sing 143 n n C8 H26 F0A sing 144 n n C9 H27 F0A sing 145 n n C5 H28 F0A sing 146 n n O4 H29 F0A sing 147 n n C1 H30 F0A sing 148 n n C32 H31 F0A sing 149 n n C32 H32 F0A sing 150 n n C32 H33 F0A sing 151 n n # _atom_sites.entry_id 6CGC _atom_sites.fract_transf_matrix[1][1] 0.023952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 2 NAP NAP . D 3 F0A A 1 402 1 F0A E3B . E 2 NAP B 1 401 1 NAP NAP . F 3 F0A B 1 402 2 F0A E3B . G 4 HOH A 1 501 19 HOH HOH . G 4 HOH A 2 502 7 HOH HOH . G 4 HOH A 3 503 12 HOH HOH . G 4 HOH A 4 504 10 HOH HOH . G 4 HOH A 5 505 2 HOH HOH . G 4 HOH A 6 506 29 HOH HOH . G 4 HOH A 7 507 31 HOH HOH . G 4 HOH A 8 508 20 HOH HOH . G 4 HOH A 9 509 4 HOH HOH . G 4 HOH A 10 510 28 HOH HOH . G 4 HOH A 11 511 27 HOH HOH . G 4 HOH A 12 512 11 HOH HOH . G 4 HOH A 13 513 14 HOH HOH . G 4 HOH A 14 514 8 HOH HOH . G 4 HOH A 15 515 24 HOH HOH . G 4 HOH A 16 516 1 HOH HOH . G 4 HOH A 17 517 9 HOH HOH . G 4 HOH A 18 518 30 HOH HOH . G 4 HOH A 19 519 21 HOH HOH . G 4 HOH A 20 520 13 HOH HOH . G 4 HOH A 21 521 22 HOH HOH . G 4 HOH A 22 522 16 HOH HOH . G 4 HOH A 23 523 15 HOH HOH . H 4 HOH B 1 501 26 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . H 4 HOH B 3 503 18 HOH HOH . H 4 HOH B 4 504 33 HOH HOH . H 4 HOH B 5 505 32 HOH HOH . H 4 HOH B 6 506 17 HOH HOH . H 4 HOH B 7 507 23 HOH HOH . H 4 HOH B 8 508 6 HOH HOH . H 4 HOH B 9 509 25 HOH HOH . H 4 HOH B 10 510 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O29 F0A . . . D 3 5.439 3.256 -0.248 1 50.62 ? O29 F0A 402 A 1 HETATM 2 C C28 F0A . . . D 3 4.251 3.074 -0.19 1 51.43 ? C28 F0A 402 A 1 HETATM 3 N N30 F0A . . . D 3 3.806 1.829 -0.037 1 49 ? N30 F0A 402 A 1 HETATM 4 C C24 F0A . . . D 3 3.341 4.294 -0.28 1 58.92 ? C24 F0A 402 A 1 HETATM 5 C C25 F0A . . . D 3 3.726 5.387 -1.076 1 59.69 ? C25 F0A 402 A 1 HETATM 6 C C26 F0A . . . D 3 2.903 6.526 -1.15 1 61.36 ? C26 F0A 402 A 1 HETATM 7 C C27 F0A . . . D 3 1.695 6.59 -0.437 1 57.55 ? C27 F0A 402 A 1 HETATM 8 C C22 F0A . . . D 3 1.3 5.511 0.343 1 50.99 ? C22 F0A 402 A 1 HETATM 9 C C23 F0A . . . D 3 2.125 4.38 0.43 1 52.32 ? C23 F0A 402 A 1 HETATM 10 C C21 F0A . . . D 3 0.024 5.568 1.147 1 46.2 ? C21 F0A 402 A 1 HETATM 11 C C17 F0A . . . D 3 -1.245 5.89 0.368 1 43.35 ? C17 F0A 402 A 1 HETATM 12 C C18 F0A . . . D 3 -2.461 6.04 1.291 1 41.26 ? C18 F0A 402 A 1 HETATM 13 O O19 F0A . . . D 3 -2.12 6.175 2.676 1 44.79 ? O19 F0A 402 A 1 HETATM 14 C C14 F0A . . . D 3 -3.357 4.849 0.968 1 40.5 ? C14 F0A 402 A 1 HETATM 15 C C20 F0A . . . D 3 -2.89 3.564 1.711 1 43.72 ? C20 F0A 402 A 1 HETATM 16 C C15 F0A . . . D 3 -3.175 4.815 -0.533 1 37.59 ? C15 F0A 402 A 1 HETATM 17 C C16 F0A . . . D 3 -1.652 4.857 -0.699 1 40.7 ? C16 F0A 402 A 1 HETATM 18 C C13 F0A . . . D 3 -4.857 5.066 1.278 1 39.1 ? C13 F0A 402 A 1 HETATM 19 C C12 F0A . . . D 3 -5.864 4.194 0.549 1 37.01 ? C12 F0A 402 A 1 HETATM 20 C C10 F0A . . . D 3 -5.518 4.039 -0.918 1 37.92 ? C10 F0A 402 A 1 HETATM 21 C C11 F0A . . . D 3 -6.404 3.041 -1.558 1 41.04 ? C11 F0A 402 A 1 HETATM 22 C C6 F0A . . . D 3 -5.898 2.198 -2.586 1 39.65 ? C6 F0A 402 A 1 HETATM 23 C C7 F0A . . . D 3 -4.447 2.195 -3.062 1 38.42 ? C7 F0A 402 A 1 HETATM 24 C C8 F0A . . . D 3 -3.633 3.39 -2.591 1 38.08 ? C8 F0A 402 A 1 HETATM 25 C C9 F0A . . . D 3 -4.009 3.694 -1.13 1 39.55 ? C9 F0A 402 A 1 HETATM 26 C C5 F0A . . . D 3 -6.748 1.275 -3.184 1 42.88 ? C5 F0A 402 A 1 HETATM 27 C C3 F0A . . . D 3 -8.103 1.193 -2.8 1 46.81 ? C3 F0A 402 A 1 HETATM 28 O O4 F0A . . . D 3 -8.983 0.321 -3.373 1 48.83 ? O4 F0A 402 A 1 HETATM 29 C C2 F0A . . . D 3 -8.605 2.025 -1.818 1 46.81 ? C2 F0A 402 A 1 HETATM 30 C C1 F0A . . . D 3 -7.762 2.956 -1.186 1 42.65 ? C1 F0A 402 A 1 HETATM 31 O O31 F0A . . . D 3 -9.938 1.909 -1.482 1 48.64 ? O31 F0A 402 A 1 HETATM 32 C C32 F0A . . . D 3 -10.254 1.789 -0.096 1 56.74 ? C32 F0A 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #