data_6CGE
#
_model_server_result.job_id            A7GCoZVE-zr5bMOsDx65eQ 
_model_server_result.datetime_utc      '2024-11-18 00:39:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6CGE 
#
_exptl.entry_id    6CGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CGE 
_cell.length_a            42.82 
_cell.length_b            108.94 
_cell.length_c            116.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 222 A HIS 221 1_555 D C31 F0D . A F0D 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale2 B NE2 HIS 222 B HIS 221 1_555 F C31 F0D . B F0D 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 307 n n 
PA O2A NAP sing 308 n n 
PA O5B NAP sing 309 n n 
PA O3 NAP sing 310 n n 
O2A HOA2 NAP sing 311 n n 
O5B C5B NAP sing 312 n n 
C5B C4B NAP sing 313 n n 
C5B H51A NAP sing 314 n n 
C5B H52A NAP sing 315 n n 
C4B O4B NAP sing 316 n n 
C4B C3B NAP sing 317 n n 
C4B H4B NAP sing 318 n n 
O4B C1B NAP sing 319 n n 
C3B O3B NAP sing 320 n n 
C3B C2B NAP sing 321 n n 
C3B H3B NAP sing 322 n n 
O3B HO3A NAP sing 323 n n 
C2B O2B NAP sing 324 n n 
C2B C1B NAP sing 325 n n 
C2B H2B NAP sing 326 n n 
O2B P2B NAP sing 327 n n 
C1B N9A NAP sing 328 n n 
C1B H1B NAP sing 329 n n 
N9A C8A NAP sing 330 n y 
N9A C4A NAP sing 331 n y 
C8A N7A NAP doub 332 n y 
C8A H8A NAP sing 333 n n 
N7A C5A NAP sing 334 n y 
C5A C6A NAP sing 335 n y 
C5A C4A NAP doub 336 n y 
C6A N6A NAP sing 337 n n 
C6A N1A NAP doub 338 n y 
N6A H61A NAP sing 339 n n 
N6A H62A NAP sing 340 n n 
N1A C2A NAP sing 341 n y 
C2A N3A NAP doub 342 n y 
C2A H2A NAP sing 343 n n 
N3A C4A NAP sing 344 n y 
O3 PN NAP sing 345 n n 
PN O1N NAP doub 346 n n 
PN O2N NAP sing 347 n n 
PN O5D NAP sing 348 n n 
O5D C5D NAP sing 349 n n 
C5D C4D NAP sing 350 n n 
C5D H51N NAP sing 351 n n 
C5D H52N NAP sing 352 n n 
C4D O4D NAP sing 353 n n 
C4D C3D NAP sing 354 n n 
C4D H4D NAP sing 355 n n 
O4D C1D NAP sing 356 n n 
C3D O3D NAP sing 357 n n 
C3D C2D NAP sing 358 n n 
C3D H3D NAP sing 359 n n 
O3D HO3N NAP sing 360 n n 
C2D O2D NAP sing 361 n n 
C2D C1D NAP sing 362 n n 
C2D H2D NAP sing 363 n n 
O2D HO2N NAP sing 364 n n 
C1D N1N NAP sing 365 n n 
C1D H1D NAP sing 366 n n 
N1N C2N NAP sing 367 n y 
N1N C6N NAP doub 368 n y 
C2N C3N NAP doub 369 n y 
C2N H2N NAP sing 370 n n 
C3N C7N NAP sing 371 n n 
C3N C4N NAP sing 372 n y 
C7N O7N NAP doub 373 n n 
C7N N7N NAP sing 374 n n 
N7N H71N NAP sing 375 n n 
N7N H72N NAP sing 376 n n 
C4N C5N NAP doub 377 n y 
C4N H4N NAP sing 378 n n 
C5N C6N NAP sing 379 n y 
C5N H5N NAP sing 380 n n 
C6N H6N NAP sing 381 n n 
P2B O1X NAP doub 382 n n 
P2B O2X NAP sing 383 n n 
P2B O3X NAP sing 384 n n 
O2X HOP2 NAP sing 385 n n 
O3X HOP3 NAP sing 386 n n 
#
_atom_sites.entry_id                     6CGE 
_atom_sites.fract_transf_matrix[1][1]    0.023354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 401 2 NAP NAP . 
D 3 F0D A 1 402 2 F0D BRM . 
E 2 NAP B 1 401 1 NAP NAP . 
F 3 F0D B 1 402 1 F0D BRM . 
G 4 HOH A 1 501 6 HOH HOH . 
G 4 HOH A 2 502 11 HOH HOH . 
G 4 HOH A 3 503 12 HOH HOH . 
G 4 HOH A 4 504 7 HOH HOH . 
G 4 HOH A 5 505 1 HOH HOH . 
G 4 HOH A 6 506 4 HOH HOH . 
G 4 HOH A 7 507 5 HOH HOH . 
G 4 HOH A 8 508 25 HOH HOH . 
G 4 HOH A 9 509 9 HOH HOH . 
G 4 HOH A 10 510 10 HOH HOH . 
G 4 HOH A 11 511 27 HOH HOH . 
G 4 HOH A 12 512 2 HOH HOH . 
H 4 HOH B 1 501 8 HOH HOH . 
H 4 HOH B 2 502 17 HOH HOH . 
H 4 HOH B 3 503 23 HOH HOH . 
H 4 HOH B 4 504 20 HOH HOH . 
H 4 HOH B 5 505 16 HOH HOH . 
H 4 HOH B 6 506 22 HOH HOH . 
H 4 HOH B 7 507 13 HOH HOH . 
H 4 HOH B 8 508 14 HOH HOH . 
H 4 HOH B 9 509 18 HOH HOH . 
H 4 HOH B 10 510 21 HOH HOH . 
H 4 HOH B 11 511 19 HOH HOH . 
H 4 HOH B 12 512 3 HOH HOH . 
H 4 HOH B 13 513 24 HOH HOH . 
H 4 HOH B 14 514 26 HOH HOH . 
H 4 HOH B 15 515 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 -13.023 -13.239 0.184 1 91.4 ? PA NAP 401 A 1 
HETATM 2 O O1A NAP . . . C 2 -13.319 -11.758 0.27 1 94.23 ? O1A NAP 401 A 1 
HETATM 3 O O2A NAP . . . C 2 -13.172 -14.112 1.422 1 91.38 ? O2A NAP 401 A 1 
HETATM 4 O O5B NAP . . . C 2 -11.534 -13.404 -0.457 1 92.02 ? O5B NAP 401 A 1 
HETATM 5 C C5B NAP . . . C 2 -11.11 -12.796 -1.701 1 79.33 ? C5B NAP 401 A 1 
HETATM 6 C C4B NAP . . . C 2 -10.2 -13.688 -2.566 1 69.49 ? C4B NAP 401 A 1 
HETATM 7 O O4B NAP . . . C 2 -9.615 -12.893 -3.628 1 61.72 ? O4B NAP 401 A 1 
HETATM 8 C C3B NAP . . . C 2 -9.034 -14.299 -1.787 1 64.44 ? C3B NAP 401 A 1 
HETATM 9 O O3B NAP . . . C 2 -8.717 -15.651 -2.149 1 60.88 ? O3B NAP 401 A 1 
HETATM 10 C C2B NAP . . . C 2 -7.895 -13.409 -2.193 1 60.24 ? C2B NAP 401 A 1 
HETATM 11 O O2B NAP . . . C 2 -6.634 -14.031 -1.93 1 59.83 ? O2B NAP 401 A 1 
HETATM 12 C C1B NAP . . . C 2 -8.213 -13.138 -3.642 1 54.61 ? C1B NAP 401 A 1 
HETATM 13 N N9A NAP . . . C 2 -7.326 -12.061 -4.145 1 48.98 ? N9A NAP 401 A 1 
HETATM 14 C C8A NAP . . . C 2 -7.132 -10.813 -3.669 1 43.75 ? C8A NAP 401 A 1 
HETATM 15 N N7A NAP . . . C 2 -6.17 -10.166 -4.392 1 42.85 ? N7A NAP 401 A 1 
HETATM 16 C C5A NAP . . . C 2 -5.746 -11 -5.359 1 40.66 ? C5A NAP 401 A 1 
HETATM 17 C C6A NAP . . . C 2 -4.777 -10.987 -6.474 1 37.27 ? C6A NAP 401 A 1 
HETATM 18 N N6A NAP . . . C 2 -4.016 -9.921 -6.756 1 38.99 ? N6A NAP 401 A 1 
HETATM 19 N N1A NAP . . . C 2 -4.66 -12.109 -7.224 1 35.2 ? N1A NAP 401 A 1 
HETATM 20 C C2A NAP . . . C 2 -5.382 -13.207 -6.992 1 34.27 ? C2A NAP 401 A 1 
HETATM 21 N N3A NAP . . . C 2 -6.28 -13.312 -6.012 1 37.96 ? N3A NAP 401 A 1 
HETATM 22 C C4A NAP . . . C 2 -6.501 -12.258 -5.178 1 43.64 ? C4A NAP 401 A 1 
HETATM 23 O O3 NAP . . . C 2 -13.822 -13.939 -1.047 1 98.96 ? O3 NAP 401 A 1 
HETATM 24 P PN NAP . . . C 2 -15.402 -13.896 -1.4 1 92.01 ? PN NAP 401 A 1 
HETATM 25 O O1N NAP . . . C 2 -15.519 -13.583 -3 1 82.28 ? O1N NAP 401 A 1 
HETATM 26 O O2N NAP . . . C 2 -15.892 -15.308 -1.227 1 82.14 ? O2N NAP 401 A 1 
HETATM 27 O O5D NAP . . . C 2 -15.983 -12.754 -0.598 1 94.75 ? O5D NAP 401 A 1 
HETATM 28 P P2B NAP . . . C 2 -5.858 -13.429 -0.644 1 64.77 ? P2B NAP 401 A 1 
HETATM 29 O O1X NAP . . . C 2 -5.326 -12.094 -1.128 1 68.55 ? O1X NAP 401 A 1 
HETATM 30 O O2X NAP . . . C 2 -6.908 -13.281 0.428 1 60.18 ? O2X NAP 401 A 1 
HETATM 31 O O3X NAP . . . C 2 -4.773 -14.418 -0.302 1 72.23 ? O3X NAP 401 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#