data_6CGP # _model_server_result.job_id dMn3Bv4F-X_hHcsOr3jyVg _model_server_result.datetime_utc '2024-11-15 08:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 6CGP # _exptl.entry_id 6CGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.35 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-hydroxy-4-[(2-propylimidazo[1,2-a]pyridin-3-yl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CGP _cell.length_a 45.31 _cell.length_b 64.95 _cell.length_c 140.499 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 610 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc2 A OD1 ASP 176 A ASP 610 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A O ASP 178 A ASP 612 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 A OD1 ASP 178 A ASP 612 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 A OD2 ASP 178 A ASP 612 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 A O HIS 180 A HIS 614 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc7 A ND1 HIS 180 A HIS 614 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc8 A O PHE 189 A PHE 623 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc9 A O ASP 192 A ASP 626 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc10 A O VAL 195 A VAL 629 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc11 A OG SER 199 A SER 633 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 A O LEU 200 A LEU 634 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc13 A O TYR 228 A TYR 662 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc14 A OD2 ASP 271 A ASP 705 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc15 C K K . A K 802 1_555 G O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc16 C K K . A K 802 1_555 G O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc17 D ZN ZN . A ZN 803 1_555 E O16 F1Y . A F1Y 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc18 D ZN ZN . A ZN 803 1_555 G O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C17 H18 N4 O2' _chem_comp.formula_weight 310.35 _chem_comp.id F1Y _chem_comp.mon_nstd_flag . _chem_comp.name N-hydroxy-4-[(2-propylimidazo[1,2-a]pyridin-3-yl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 F1Y sing 92 n n C02 C03 F1Y sing 93 n n C03 C04 F1Y sing 94 n n O16 N15 F1Y sing 95 n n N15 C13 F1Y sing 96 n n C13 C10 F1Y sing 97 n n C13 O14 F1Y doub 98 n n C04 N23 F1Y sing 99 n y C04 C05 F1Y doub 100 n y C11 C10 F1Y doub 101 n y C11 C12 F1Y sing 102 n y C10 C09 F1Y sing 103 n y C12 C07 F1Y doub 104 n y N23 C22 F1Y doub 105 n y C09 C08 F1Y doub 106 n y C07 C08 F1Y sing 107 n y C07 N06 F1Y sing 108 n n N06 C05 F1Y sing 109 n n C05 N17 F1Y sing 110 n y C22 N17 F1Y sing 111 n y C22 C21 F1Y sing 112 n y N17 C18 F1Y sing 113 n y C21 C20 F1Y doub 114 n y C18 C19 F1Y doub 115 n y C20 C19 F1Y sing 116 n y C20 H1 F1Y sing 117 n n C21 H2 F1Y sing 118 n n C01 H3 F1Y sing 119 n n C01 H4 F1Y sing 120 n n C01 H5 F1Y sing 121 n n C02 H6 F1Y sing 122 n n C03 H7 F1Y sing 123 n n C08 H8 F1Y sing 124 n n C09 H9 F1Y sing 125 n n C11 H10 F1Y sing 126 n n C12 H11 F1Y sing 127 n n C18 H12 F1Y sing 128 n n C19 H13 F1Y sing 129 n n N06 H14 F1Y sing 130 n n N15 H15 F1Y sing 131 n n O16 H16 F1Y sing 132 n n C02 H17 F1Y sing 133 n n C03 H18 F1Y sing 134 n n # _atom_sites.entry_id 6CGP _atom_sites.fract_transf_matrix[1][1] 0.02207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 801 1 K K . C 2 K A 1 802 2 K K . D 3 ZN A 1 803 3 ZN ZN . E 4 F1Y A 1 804 1 F1Y LIG . F 5 EDO A 1 805 1 EDO EDO . G 6 HOH A 1 901 8 HOH HOH . G 6 HOH A 2 902 13 HOH HOH . G 6 HOH A 3 903 20 HOH HOH . G 6 HOH A 4 904 17 HOH HOH . G 6 HOH A 5 905 18 HOH HOH . G 6 HOH A 6 906 1 HOH HOH . G 6 HOH A 7 907 5 HOH HOH . G 6 HOH A 8 908 7 HOH HOH . G 6 HOH A 9 909 16 HOH HOH . G 6 HOH A 10 910 11 HOH HOH . G 6 HOH A 11 911 14 HOH HOH . G 6 HOH A 12 912 10 HOH HOH . G 6 HOH A 13 913 15 HOH HOH . G 6 HOH A 14 914 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 F1Y . . . E 4 -23.489 19.13 23.749 1 44.42 ? C10 F1Y 804 A 1 HETATM 2 C C13 F1Y . . . E 4 -24.063 17.786 23.456 1 43.88 ? C13 F1Y 804 A 1 HETATM 3 C C20 F1Y . . . E 4 -17.673 23.054 27.66 1 57.29 ? C20 F1Y 804 A 1 HETATM 4 C C21 F1Y . . . E 4 -17.369 23.477 26.389 1 49.4 ? C21 F1Y 804 A 1 HETATM 5 C C22 F1Y . . . E 4 -18.43 23.534 25.408 1 54.61 ? C22 F1Y 804 A 1 HETATM 6 C C01 F1Y . . . E 4 -18.539 22.17 21.24 1 54.72 ? C01 F1Y 804 A 1 HETATM 7 C C02 F1Y . . . E 4 -19.468 23.362 20.944 1 56.55 ? C02 F1Y 804 A 1 HETATM 8 C C03 F1Y . . . E 4 -20.105 24.111 22.155 1 56.39 ? C03 F1Y 804 A 1 HETATM 9 C C04 F1Y . . . E 4 -19.696 23.779 23.6 1 57.09 ? C04 F1Y 804 A 1 HETATM 10 C C05 F1Y . . . E 4 -20.542 23.321 24.633 1 54.81 ? C05 F1Y 804 A 1 HETATM 11 C C07 F1Y . . . E 4 -22.415 21.744 24.326 1 47.95 ? C07 F1Y 804 A 1 HETATM 12 C C08 F1Y . . . E 4 -23.784 21.467 24.458 1 47.15 ? C08 F1Y 804 A 1 HETATM 13 C C09 F1Y . . . E 4 -24.294 20.189 24.173 1 46.18 ? C09 F1Y 804 A 1 HETATM 14 C C11 F1Y . . . E 4 -22.123 19.432 23.624 1 43.94 ? C11 F1Y 804 A 1 HETATM 15 C C12 F1Y . . . E 4 -21.599 20.694 23.901 1 45.64 ? C12 F1Y 804 A 1 HETATM 16 C C18 F1Y . . . E 4 -20.015 22.729 27.083 1 55.02 ? C18 F1Y 804 A 1 HETATM 17 C C19 F1Y . . . E 4 -18.989 22.681 28.007 1 54.99 ? C19 F1Y 804 A 1 HETATM 18 N N06 F1Y . . . E 4 -21.922 23.031 24.617 1 51.79 ? N06 F1Y 804 A 1 HETATM 19 N N15 F1Y . . . E 4 -23.33 16.74 22.832 1 46.35 ? N15 F1Y 804 A 1 HETATM 20 N N17 F1Y . . . E 4 -19.714 23.163 25.775 1 55.53 ? N17 F1Y 804 A 1 HETATM 21 N N23 F1Y . . . E 4 -18.386 23.92 24.084 1 55.3 ? N23 F1Y 804 A 1 HETATM 22 O O14 F1Y . . . E 4 -25.25 17.532 23.761 1 50.22 ? O14 F1Y 804 A 1 HETATM 23 O O16 F1Y . . . E 4 -23.981 15.552 22.618 1 48.29 ? O16 F1Y 804 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #