data_6CGP # _model_server_result.job_id a-DfNFyTQ93gAC3FJ0t4tw _model_server_result.datetime_utc '2024-11-15 08:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 6CGP # _exptl.entry_id 6CGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CGP _cell.length_a 45.31 _cell.length_b 64.95 _cell.length_c 140.499 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 610 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc2 A OD1 ASP 176 A ASP 610 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A O ASP 178 A ASP 612 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 A OD1 ASP 178 A ASP 612 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 A OD2 ASP 178 A ASP 612 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 A O HIS 180 A HIS 614 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc7 A ND1 HIS 180 A HIS 614 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc8 A O PHE 189 A PHE 623 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc9 A O ASP 192 A ASP 626 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc10 A O VAL 195 A VAL 629 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc11 A OG SER 199 A SER 633 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 A O LEU 200 A LEU 634 1_555 B K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc13 A O TYR 228 A TYR 662 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc14 A OD2 ASP 271 A ASP 705 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc15 C K K . A K 802 1_555 G O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc16 C K K . A K 802 1_555 G O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc17 D ZN ZN . A ZN 803 1_555 E O16 F1Y . A F1Y 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc18 D ZN ZN . A ZN 803 1_555 G O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6CGP _atom_sites.fract_transf_matrix[1][1] 0.02207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 801 1 K K . C 2 K A 1 802 2 K K . D 3 ZN A 1 803 3 ZN ZN . E 4 F1Y A 1 804 1 F1Y LIG . F 5 EDO A 1 805 1 EDO EDO . G 6 HOH A 1 901 8 HOH HOH . G 6 HOH A 2 902 13 HOH HOH . G 6 HOH A 3 903 20 HOH HOH . G 6 HOH A 4 904 17 HOH HOH . G 6 HOH A 5 905 18 HOH HOH . G 6 HOH A 6 906 1 HOH HOH . G 6 HOH A 7 907 5 HOH HOH . G 6 HOH A 8 908 7 HOH HOH . G 6 HOH A 9 909 16 HOH HOH . G 6 HOH A 10 910 11 HOH HOH . G 6 HOH A 11 911 14 HOH HOH . G 6 HOH A 12 912 10 HOH HOH . G 6 HOH A 13 913 15 HOH HOH . G 6 HOH A 14 914 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -20.886 26.848 27.15 1 54.48 ? C1 EDO 805 A 1 HETATM 2 O O1 EDO . . . F 5 -19.606 26.554 26.579 1 53.64 ? O1 EDO 805 A 1 HETATM 3 C C2 EDO . . . F 5 -21.863 25.733 26.803 1 51.11 ? C2 EDO 805 A 1 HETATM 4 O O2 EDO . . . F 5 -23.192 26.265 26.739 1 51.07 ? O2 EDO 805 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #