data_6CGT # _model_server_result.job_id PvWS_d2w3ESjV8XGmLph8g _model_server_result.datetime_utc '2025-08-31 13:32:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":685}' # _entry.id 6CGT # _exptl.entry_id 6CGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CGT _cell.length_a 93 _cell.length_b 104.9 _cell.length_c 113.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 DAG _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 701 GLC 2 n B DAG 2 B 2 DAG ? 702 DAG 2 n C GLC 1 C 1 GLC ? 704 GLC 2 n C DAG 2 C 2 DAG ? 705 DAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 43 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 D C1 OPG . A OPG 703 1_555 B N4 DAG . B DAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 D O4 OPG . A OPG 703 1_555 C C1 GLC . C GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale3 E C1 OPG . A OPG 706 1_555 C N4 DAG . C DAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 B O4 GLC . B GLC 1 1_555 B C1 DAG . B DAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale5 C O4 GLC . C GLC 1 1_555 C C1 DAG . C DAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? metalc ? metalc1 A OD1 ASP 27 A ASP 27 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc2 A O ASN 29 A ASN 29 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc3 A OD1 ASN 32 A ASN 32 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc4 A OD1 ASN 33 A ASN 33 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 A O GLY 51 A GLY 51 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc6 A OD2 ASP 53 A ASP 53 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc7 A OD1 ASN 139 A ASN 139 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 A O ILE 190 A ILE 190 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc9 A OD2 ASP 199 A ASP 199 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc10 A OD1 ASP 199 A ASP 199 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc11 A O HIS 233 A HIS 233 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CGT _atom_sites.fract_transf_matrix[1][1] 0.010753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 OPG A 1 703 703 OPG OPG . E 3 OPG A 1 706 706 OPG OPG . F 4 CA A 1 685 685 CA CA . G 4 CA A 1 686 686 CA CA . H 5 HOH A 1 707 1 HOH HOH . H 5 HOH A 2 708 2 HOH HOH . H 5 HOH A 3 709 3 HOH HOH . H 5 HOH A 4 710 4 HOH HOH . H 5 HOH A 5 711 5 HOH HOH . H 5 HOH A 6 712 6 HOH HOH . H 5 HOH A 7 713 7 HOH HOH . H 5 HOH A 8 714 8 HOH HOH . H 5 HOH A 9 715 9 HOH HOH . H 5 HOH A 10 716 10 HOH HOH . H 5 HOH A 11 717 11 HOH HOH . H 5 HOH A 12 718 12 HOH HOH . H 5 HOH A 13 719 13 HOH HOH . H 5 HOH A 14 720 14 HOH HOH . H 5 HOH A 15 721 15 HOH HOH . H 5 HOH A 16 722 16 HOH HOH . H 5 HOH A 17 723 17 HOH HOH . H 5 HOH A 18 724 18 HOH HOH . H 5 HOH A 19 725 19 HOH HOH . H 5 HOH A 20 726 20 HOH HOH . H 5 HOH A 21 727 21 HOH HOH . H 5 HOH A 22 728 22 HOH HOH . H 5 HOH A 23 729 23 HOH HOH . H 5 HOH A 24 730 24 HOH HOH . H 5 HOH A 25 731 25 HOH HOH . H 5 HOH A 26 732 26 HOH HOH . H 5 HOH A 27 733 27 HOH HOH . H 5 HOH A 28 734 28 HOH HOH . H 5 HOH A 29 735 29 HOH HOH . H 5 HOH A 30 736 30 HOH HOH . H 5 HOH A 31 737 31 HOH HOH . H 5 HOH A 32 738 32 HOH HOH . H 5 HOH A 33 739 33 HOH HOH . H 5 HOH A 34 740 34 HOH HOH . H 5 HOH A 35 741 35 HOH HOH . H 5 HOH A 36 742 36 HOH HOH . H 5 HOH A 37 743 37 HOH HOH . H 5 HOH A 38 744 38 HOH HOH . H 5 HOH A 39 745 39 HOH HOH . H 5 HOH A 40 746 40 HOH HOH . H 5 HOH A 41 747 41 HOH HOH . H 5 HOH A 42 748 42 HOH HOH . H 5 HOH A 43 749 43 HOH HOH . H 5 HOH A 44 750 44 HOH HOH . H 5 HOH A 45 751 45 HOH HOH . H 5 HOH A 46 752 46 HOH HOH . H 5 HOH A 47 753 47 HOH HOH . H 5 HOH A 48 754 48 HOH HOH . H 5 HOH A 49 755 49 HOH HOH . H 5 HOH A 50 756 50 HOH HOH . H 5 HOH A 51 757 51 HOH HOH . H 5 HOH A 52 758 52 HOH HOH . H 5 HOH A 53 759 53 HOH HOH . H 5 HOH A 54 760 54 HOH HOH . H 5 HOH A 55 761 55 HOH HOH . H 5 HOH A 56 762 56 HOH HOH . H 5 HOH A 57 763 57 HOH HOH . H 5 HOH A 58 764 58 HOH HOH . H 5 HOH A 59 765 59 HOH HOH . H 5 HOH A 60 766 60 HOH HOH . H 5 HOH A 61 767 61 HOH HOH . H 5 HOH A 62 768 62 HOH HOH . H 5 HOH A 63 769 63 HOH HOH . H 5 HOH A 64 770 64 HOH HOH . H 5 HOH A 65 771 65 HOH HOH . H 5 HOH A 66 772 66 HOH HOH . H 5 HOH A 67 773 67 HOH HOH . H 5 HOH A 68 774 68 HOH HOH . H 5 HOH A 69 775 69 HOH HOH . H 5 HOH A 70 776 70 HOH HOH . H 5 HOH A 71 777 71 HOH HOH . H 5 HOH A 72 778 72 HOH HOH . H 5 HOH A 73 779 73 HOH HOH . H 5 HOH A 74 780 74 HOH HOH . H 5 HOH A 75 781 75 HOH HOH . H 5 HOH A 76 782 76 HOH HOH . H 5 HOH A 77 783 77 HOH HOH . H 5 HOH A 78 784 78 HOH HOH . H 5 HOH A 79 785 79 HOH HOH . H 5 HOH A 80 786 80 HOH HOH . H 5 HOH A 81 787 81 HOH HOH . H 5 HOH A 82 788 82 HOH HOH . H 5 HOH A 83 789 83 HOH HOH . H 5 HOH A 84 790 84 HOH HOH . H 5 HOH A 85 791 85 HOH HOH . H 5 HOH A 86 792 86 HOH HOH . H 5 HOH A 87 793 87 HOH HOH . H 5 HOH A 88 794 88 HOH HOH . H 5 HOH A 89 795 89 HOH HOH . H 5 HOH A 90 796 90 HOH HOH . H 5 HOH A 91 797 91 HOH HOH . H 5 HOH A 92 798 92 HOH HOH . H 5 HOH A 93 799 93 HOH HOH . H 5 HOH A 94 800 94 HOH HOH . H 5 HOH A 95 801 95 HOH HOH . H 5 HOH A 96 802 96 HOH HOH . H 5 HOH A 97 803 97 HOH HOH . H 5 HOH A 98 804 98 HOH HOH . H 5 HOH A 99 805 99 HOH HOH . H 5 HOH A 100 806 100 HOH HOH . H 5 HOH A 101 807 101 HOH HOH . H 5 HOH A 102 808 102 HOH HOH . H 5 HOH A 103 809 103 HOH HOH . H 5 HOH A 104 810 104 HOH HOH . H 5 HOH A 105 811 105 HOH HOH . H 5 HOH A 106 812 106 HOH HOH . H 5 HOH A 107 813 107 HOH HOH . H 5 HOH A 108 814 108 HOH HOH . H 5 HOH A 109 815 109 HOH HOH . H 5 HOH A 110 816 110 HOH HOH . H 5 HOH A 111 817 111 HOH HOH . H 5 HOH A 112 818 112 HOH HOH . H 5 HOH A 113 819 113 HOH HOH . H 5 HOH A 114 820 114 HOH HOH . H 5 HOH A 115 821 115 HOH HOH . H 5 HOH A 116 822 116 HOH HOH . H 5 HOH A 117 823 117 HOH HOH . H 5 HOH A 118 824 118 HOH HOH . H 5 HOH A 119 825 119 HOH HOH . H 5 HOH A 120 826 120 HOH HOH . H 5 HOH A 121 827 121 HOH HOH . H 5 HOH A 122 828 122 HOH HOH . H 5 HOH A 123 829 123 HOH HOH . H 5 HOH A 124 830 124 HOH HOH . H 5 HOH A 125 831 125 HOH HOH . H 5 HOH A 126 832 126 HOH HOH . H 5 HOH A 127 833 127 HOH HOH . H 5 HOH A 128 834 128 HOH HOH . H 5 HOH A 129 835 129 HOH HOH . H 5 HOH A 130 836 130 HOH HOH . H 5 HOH A 131 837 131 HOH HOH . H 5 HOH A 132 838 132 HOH HOH . H 5 HOH A 133 839 133 HOH HOH . H 5 HOH A 134 840 134 HOH HOH . H 5 HOH A 135 841 135 HOH HOH . H 5 HOH A 136 842 136 HOH HOH . H 5 HOH A 137 843 137 HOH HOH . H 5 HOH A 138 844 138 HOH HOH . H 5 HOH A 139 845 139 HOH HOH . H 5 HOH A 140 846 140 HOH HOH . H 5 HOH A 141 847 141 HOH HOH . H 5 HOH A 142 848 142 HOH HOH . H 5 HOH A 143 849 143 HOH HOH . H 5 HOH A 144 850 144 HOH HOH . H 5 HOH A 145 851 145 HOH HOH . H 5 HOH A 146 852 146 HOH HOH . H 5 HOH A 147 853 147 HOH HOH . H 5 HOH A 148 854 148 HOH HOH . H 5 HOH A 149 855 149 HOH HOH . H 5 HOH A 150 856 150 HOH HOH . H 5 HOH A 151 857 151 HOH HOH . H 5 HOH A 152 858 152 HOH HOH . H 5 HOH A 153 859 153 HOH HOH . H 5 HOH A 154 860 154 HOH HOH . H 5 HOH A 155 861 155 HOH HOH . H 5 HOH A 156 862 156 HOH HOH . H 5 HOH A 157 863 157 HOH HOH . H 5 HOH A 158 864 158 HOH HOH . H 5 HOH A 159 865 159 HOH HOH . H 5 HOH A 160 866 160 HOH HOH . H 5 HOH A 161 867 161 HOH HOH . H 5 HOH A 162 868 162 HOH HOH . H 5 HOH A 163 869 163 HOH HOH . H 5 HOH A 164 870 164 HOH HOH . H 5 HOH A 165 871 165 HOH HOH . H 5 HOH A 166 872 166 HOH HOH . H 5 HOH A 167 873 167 HOH HOH . H 5 HOH A 168 874 168 HOH HOH . H 5 HOH A 169 875 169 HOH HOH . H 5 HOH A 170 876 170 HOH HOH . H 5 HOH A 171 877 171 HOH HOH . H 5 HOH A 172 878 172 HOH HOH . H 5 HOH A 173 879 173 HOH HOH . H 5 HOH A 174 880 174 HOH HOH . H 5 HOH A 175 881 175 HOH HOH . H 5 HOH A 176 882 176 HOH HOH . H 5 HOH A 177 883 177 HOH HOH . H 5 HOH A 178 884 178 HOH HOH . H 5 HOH A 179 885 179 HOH HOH . H 5 HOH A 180 886 180 HOH HOH . H 5 HOH A 181 887 181 HOH HOH . H 5 HOH A 182 888 182 HOH HOH . H 5 HOH A 183 889 183 HOH HOH . H 5 HOH A 184 890 184 HOH HOH . H 5 HOH A 185 891 185 HOH HOH . H 5 HOH A 186 892 186 HOH HOH . H 5 HOH A 187 893 187 HOH HOH . H 5 HOH A 188 894 188 HOH HOH . H 5 HOH A 189 895 189 HOH HOH . H 5 HOH A 190 896 190 HOH HOH . H 5 HOH A 191 897 191 HOH HOH . H 5 HOH A 192 898 192 HOH HOH . H 5 HOH A 193 899 193 HOH HOH . H 5 HOH A 194 900 194 HOH HOH . H 5 HOH A 195 901 195 HOH HOH . H 5 HOH A 196 902 196 HOH HOH . H 5 HOH A 197 903 197 HOH HOH . H 5 HOH A 198 904 198 HOH HOH . H 5 HOH A 199 905 199 HOH HOH . H 5 HOH A 200 906 200 HOH HOH . H 5 HOH A 201 907 201 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.319 _atom_site.Cartn_y 21.34 _atom_site.Cartn_z 17.072 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 685 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #