data_6CH5 # _model_server_result.job_id jINWkM2lTKPDE2w8yQoX-w _model_server_result.datetime_utc '2024-11-26 23:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ch5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":207}' # _entry.id 6CH5 # _exptl.entry_id 6CH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CH5 _cell.length_a 59.649 _cell.length_b 66.367 _cell.length_c 68.218 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,O 1 1 B,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 PHE 60 A PHE 60 1_555 J N1 F0M . A F0M 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 O O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 L FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 148 n n C1 C2 GOL sing 149 n n C1 H11 GOL sing 150 n n C1 H12 GOL sing 151 n n O1 HO1 GOL sing 152 n n C2 O2 GOL sing 153 n n C2 C3 GOL sing 154 n n C2 H2 GOL sing 155 n n O2 HO2 GOL sing 156 n n C3 O3 GOL sing 157 n n C3 H31 GOL sing 158 n n C3 H32 GOL sing 159 n n O3 HO3 GOL sing 160 n n # _atom_sites.entry_id 6CH5 _atom_sites.fract_transf_matrix[1][1] 0.016765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 3 SO4 A 1 202 202 SO4 SO4 . E 3 SO4 A 1 203 203 SO4 SO4 . F 3 SO4 A 1 204 204 SO4 SO4 . G 3 SO4 A 1 205 205 SO4 SO4 . H 4 GOL A 1 206 206 GOL GOL . I 4 GOL A 1 207 207 GOL GOL . J 5 F0M A 1 208 208 F0M F0M . K 6 PEG A 1 209 209 PEG PEG . L 2 HEM B 1 201 201 HEM HEM . M 3 SO4 B 1 202 202 SO4 SO4 . N 4 GOL B 1 203 203 GOL GOL . O 7 HOH A 1 301 301 HOH HOH . O 7 HOH A 2 302 302 HOH HOH . O 7 HOH A 3 303 303 HOH HOH . O 7 HOH A 4 304 304 HOH HOH . O 7 HOH A 5 305 305 HOH HOH . O 7 HOH A 6 306 306 HOH HOH . O 7 HOH A 7 307 307 HOH HOH . O 7 HOH A 8 308 308 HOH HOH . O 7 HOH A 9 309 309 HOH HOH . O 7 HOH A 10 310 310 HOH HOH . O 7 HOH A 11 311 311 HOH HOH . O 7 HOH A 12 312 312 HOH HOH . O 7 HOH A 13 313 313 HOH HOH . O 7 HOH A 14 314 314 HOH HOH . O 7 HOH A 15 315 315 HOH HOH . O 7 HOH A 16 316 316 HOH HOH . O 7 HOH A 17 317 317 HOH HOH . O 7 HOH A 18 318 318 HOH HOH . O 7 HOH A 19 319 319 HOH HOH . O 7 HOH A 20 320 320 HOH HOH . O 7 HOH A 21 321 321 HOH HOH . O 7 HOH A 22 322 322 HOH HOH . O 7 HOH A 23 323 323 HOH HOH . O 7 HOH A 24 324 324 HOH HOH . O 7 HOH A 25 325 325 HOH HOH . O 7 HOH A 26 326 326 HOH HOH . O 7 HOH A 27 327 327 HOH HOH . O 7 HOH A 28 328 328 HOH HOH . O 7 HOH A 29 329 329 HOH HOH . O 7 HOH A 30 330 330 HOH HOH . O 7 HOH A 31 331 331 HOH HOH . O 7 HOH A 32 332 332 HOH HOH . O 7 HOH A 33 333 333 HOH HOH . O 7 HOH A 34 334 334 HOH HOH . O 7 HOH A 35 335 335 HOH HOH . O 7 HOH A 36 336 336 HOH HOH . O 7 HOH A 37 337 337 HOH HOH . O 7 HOH A 38 338 338 HOH HOH . O 7 HOH A 39 339 339 HOH HOH . O 7 HOH A 40 340 340 HOH HOH . O 7 HOH A 41 341 341 HOH HOH . O 7 HOH A 42 342 342 HOH HOH . O 7 HOH A 43 343 343 HOH HOH . O 7 HOH A 44 344 344 HOH HOH . O 7 HOH A 45 345 345 HOH HOH . O 7 HOH A 46 346 346 HOH HOH . O 7 HOH A 47 347 347 HOH HOH . O 7 HOH A 48 348 348 HOH HOH . O 7 HOH A 49 349 349 HOH HOH . O 7 HOH A 50 350 350 HOH HOH . O 7 HOH A 51 351 351 HOH HOH . O 7 HOH A 52 352 352 HOH HOH . O 7 HOH A 53 353 353 HOH HOH . O 7 HOH A 54 354 354 HOH HOH . O 7 HOH A 55 355 355 HOH HOH . O 7 HOH A 56 356 356 HOH HOH . O 7 HOH A 57 357 357 HOH HOH . O 7 HOH A 58 358 358 HOH HOH . O 7 HOH A 59 359 359 HOH HOH . O 7 HOH A 60 360 360 HOH HOH . O 7 HOH A 61 361 361 HOH HOH . O 7 HOH A 62 362 362 HOH HOH . O 7 HOH A 63 363 363 HOH HOH . O 7 HOH A 64 364 364 HOH HOH . O 7 HOH A 65 365 365 HOH HOH . O 7 HOH A 66 366 366 HOH HOH . O 7 HOH A 67 367 367 HOH HOH . O 7 HOH A 68 368 368 HOH HOH . O 7 HOH A 69 369 369 HOH HOH . O 7 HOH A 70 370 370 HOH HOH . O 7 HOH A 71 371 371 HOH HOH . O 7 HOH A 72 372 372 HOH HOH . O 7 HOH A 73 373 373 HOH HOH . O 7 HOH A 74 374 374 HOH HOH . O 7 HOH A 75 375 375 HOH HOH . O 7 HOH A 76 376 376 HOH HOH . O 7 HOH A 77 377 377 HOH HOH . O 7 HOH A 78 378 378 HOH HOH . O 7 HOH A 79 379 379 HOH HOH . O 7 HOH A 80 380 380 HOH HOH . O 7 HOH A 81 381 381 HOH HOH . O 7 HOH A 82 382 382 HOH HOH . O 7 HOH A 83 383 383 HOH HOH . O 7 HOH A 84 384 384 HOH HOH . O 7 HOH A 85 385 385 HOH HOH . O 7 HOH A 86 386 386 HOH HOH . O 7 HOH A 87 387 387 HOH HOH . O 7 HOH A 88 388 388 HOH HOH . O 7 HOH A 89 389 389 HOH HOH . O 7 HOH A 90 390 390 HOH HOH . O 7 HOH A 91 391 391 HOH HOH . O 7 HOH A 92 392 392 HOH HOH . O 7 HOH A 93 393 393 HOH HOH . O 7 HOH A 94 394 394 HOH HOH . O 7 HOH A 95 395 395 HOH HOH . O 7 HOH A 96 396 396 HOH HOH . O 7 HOH A 97 397 397 HOH HOH . O 7 HOH A 98 398 398 HOH HOH . O 7 HOH A 99 399 399 HOH HOH . O 7 HOH A 100 400 400 HOH HOH . O 7 HOH A 101 401 401 HOH HOH . O 7 HOH A 102 402 402 HOH HOH . O 7 HOH A 103 403 403 HOH HOH . O 7 HOH A 104 404 404 HOH HOH . O 7 HOH A 105 405 405 HOH HOH . O 7 HOH A 106 406 406 HOH HOH . O 7 HOH A 107 407 407 HOH HOH . O 7 HOH A 108 408 408 HOH HOH . O 7 HOH A 109 409 409 HOH HOH . O 7 HOH A 110 410 410 HOH HOH . O 7 HOH A 111 411 411 HOH HOH . O 7 HOH A 112 412 412 HOH HOH . O 7 HOH A 113 413 413 HOH HOH . O 7 HOH A 114 414 414 HOH HOH . O 7 HOH A 115 415 415 HOH HOH . O 7 HOH A 116 416 416 HOH HOH . O 7 HOH A 117 417 417 HOH HOH . O 7 HOH A 118 418 418 HOH HOH . O 7 HOH A 119 419 419 HOH HOH . O 7 HOH A 120 420 420 HOH HOH . O 7 HOH A 121 421 421 HOH HOH . O 7 HOH A 122 422 422 HOH HOH . O 7 HOH A 123 423 423 HOH HOH . O 7 HOH A 124 424 424 HOH HOH . O 7 HOH A 125 425 425 HOH HOH . O 7 HOH A 126 426 426 HOH HOH . O 7 HOH A 127 427 427 HOH HOH . O 7 HOH A 128 428 428 HOH HOH . O 7 HOH A 129 429 429 HOH HOH . O 7 HOH A 130 430 430 HOH HOH . O 7 HOH A 131 431 431 HOH HOH . O 7 HOH A 132 432 432 HOH HOH . O 7 HOH A 133 433 433 HOH HOH . O 7 HOH A 134 434 434 HOH HOH . O 7 HOH A 135 435 435 HOH HOH . O 7 HOH A 136 436 436 HOH HOH . O 7 HOH A 137 437 437 HOH HOH . O 7 HOH A 138 438 438 HOH HOH . O 7 HOH A 139 439 439 HOH HOH . O 7 HOH A 140 440 440 HOH HOH . O 7 HOH A 141 441 441 HOH HOH . O 7 HOH A 142 442 442 HOH HOH . O 7 HOH A 143 443 443 HOH HOH . O 7 HOH A 144 444 444 HOH HOH . O 7 HOH A 145 445 445 HOH HOH . O 7 HOH A 146 446 446 HOH HOH . O 7 HOH A 147 447 447 HOH HOH . O 7 HOH A 148 448 448 HOH HOH . O 7 HOH A 149 449 449 HOH HOH . O 7 HOH A 150 450 450 HOH HOH . O 7 HOH A 151 451 451 HOH HOH . O 7 HOH A 152 452 452 HOH HOH . O 7 HOH A 153 453 453 HOH HOH . O 7 HOH A 154 454 454 HOH HOH . O 7 HOH A 155 455 455 HOH HOH . O 7 HOH A 156 456 456 HOH HOH . O 7 HOH A 157 457 457 HOH HOH . O 7 HOH A 158 458 458 HOH HOH . O 7 HOH A 159 459 459 HOH HOH . O 7 HOH A 160 460 460 HOH HOH . O 7 HOH A 161 461 461 HOH HOH . P 7 HOH B 1 301 301 HOH HOH . P 7 HOH B 2 302 302 HOH HOH . P 7 HOH B 3 303 303 HOH HOH . P 7 HOH B 4 304 305 HOH HOH . P 7 HOH B 5 305 306 HOH HOH . P 7 HOH B 6 306 307 HOH HOH . P 7 HOH B 7 307 308 HOH HOH . P 7 HOH B 8 308 309 HOH HOH . P 7 HOH B 9 309 310 HOH HOH . P 7 HOH B 10 310 311 HOH HOH . P 7 HOH B 11 311 312 HOH HOH . P 7 HOH B 12 312 313 HOH HOH . P 7 HOH B 13 313 314 HOH HOH . P 7 HOH B 14 314 315 HOH HOH . P 7 HOH B 15 315 316 HOH HOH . P 7 HOH B 16 316 317 HOH HOH . P 7 HOH B 17 317 318 HOH HOH . P 7 HOH B 18 318 319 HOH HOH . P 7 HOH B 19 319 320 HOH HOH . P 7 HOH B 20 320 321 HOH HOH . P 7 HOH B 21 321 322 HOH HOH . P 7 HOH B 22 322 323 HOH HOH . P 7 HOH B 23 323 324 HOH HOH . P 7 HOH B 24 324 325 HOH HOH . P 7 HOH B 25 325 326 HOH HOH . P 7 HOH B 26 326 327 HOH HOH . P 7 HOH B 27 327 328 HOH HOH . P 7 HOH B 28 328 329 HOH HOH . P 7 HOH B 29 329 330 HOH HOH . P 7 HOH B 30 330 331 HOH HOH . P 7 HOH B 31 331 332 HOH HOH . P 7 HOH B 32 332 333 HOH HOH . P 7 HOH B 33 333 334 HOH HOH . P 7 HOH B 34 334 304 HOH HOH . P 7 HOH B 35 335 335 HOH HOH . P 7 HOH B 36 336 336 HOH HOH . P 7 HOH B 37 337 337 HOH HOH . P 7 HOH B 38 338 338 HOH HOH . P 7 HOH B 39 339 339 HOH HOH . P 7 HOH B 40 340 340 HOH HOH . P 7 HOH B 41 341 341 HOH HOH . P 7 HOH B 42 342 342 HOH HOH . P 7 HOH B 43 343 343 HOH HOH . P 7 HOH B 44 344 344 HOH HOH . P 7 HOH B 45 345 345 HOH HOH . P 7 HOH B 46 346 346 HOH HOH . P 7 HOH B 47 347 347 HOH HOH . P 7 HOH B 48 348 348 HOH HOH . P 7 HOH B 49 349 349 HOH HOH . P 7 HOH B 50 350 350 HOH HOH . P 7 HOH B 51 351 351 HOH HOH . P 7 HOH B 52 352 352 HOH HOH . P 7 HOH B 53 353 353 HOH HOH . P 7 HOH B 54 354 354 HOH HOH . P 7 HOH B 55 355 355 HOH HOH . P 7 HOH B 56 356 356 HOH HOH . P 7 HOH B 57 357 357 HOH HOH . P 7 HOH B 58 358 358 HOH HOH . P 7 HOH B 59 359 359 HOH HOH . P 7 HOH B 60 360 360 HOH HOH . P 7 HOH B 61 361 361 HOH HOH . P 7 HOH B 62 362 362 HOH HOH . P 7 HOH B 63 363 363 HOH HOH . P 7 HOH B 64 364 364 HOH HOH . P 7 HOH B 65 365 365 HOH HOH . P 7 HOH B 66 366 366 HOH HOH . P 7 HOH B 67 367 367 HOH HOH . P 7 HOH B 68 368 368 HOH HOH . P 7 HOH B 69 369 369 HOH HOH . P 7 HOH B 70 370 370 HOH HOH . P 7 HOH B 71 371 371 HOH HOH . P 7 HOH B 72 372 372 HOH HOH . P 7 HOH B 73 373 373 HOH HOH . P 7 HOH B 74 374 374 HOH HOH . P 7 HOH B 75 375 375 HOH HOH . P 7 HOH B 76 376 376 HOH HOH . P 7 HOH B 77 377 377 HOH HOH . P 7 HOH B 78 378 378 HOH HOH . P 7 HOH B 79 379 379 HOH HOH . P 7 HOH B 80 380 380 HOH HOH . P 7 HOH B 81 381 381 HOH HOH . P 7 HOH B 82 382 382 HOH HOH . P 7 HOH B 83 383 383 HOH HOH . P 7 HOH B 84 384 384 HOH HOH . P 7 HOH B 85 385 385 HOH HOH . P 7 HOH B 86 386 386 HOH HOH . P 7 HOH B 87 387 387 HOH HOH . P 7 HOH B 88 388 388 HOH HOH . P 7 HOH B 89 389 389 HOH HOH . P 7 HOH B 90 390 390 HOH HOH . P 7 HOH B 91 391 391 HOH HOH . P 7 HOH B 92 392 392 HOH HOH . P 7 HOH B 93 393 393 HOH HOH . P 7 HOH B 94 394 394 HOH HOH . P 7 HOH B 95 395 395 HOH HOH . P 7 HOH B 96 396 396 HOH HOH . P 7 HOH B 97 397 397 HOH HOH . P 7 HOH B 98 398 398 HOH HOH . P 7 HOH B 99 399 399 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -17.507 18.023 -18.667 0.7 18.7 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . I 4 -17.847 16.865 -18.14 0.7 9.59 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . I 4 -18.72 18.457 -19.372 0.7 20.92 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . I 4 -18.662 19.66 -18.677 0.7 14.17 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . I 4 -18.441 18.402 -20.86 0.7 25.85 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . I 4 -18.555 17.064 -21.329 0.7 31.89 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #