data_6CHG
#
_model_server_result.job_id            s4FE5Kgrjl5X6VOaOO3r-Q 
_model_server_result.datetime_utc      '2024-12-21 13:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6chg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1101}' 
#
_entry.id    6CHG 
#
_exptl.entry_id    6CHG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.41 
_cell.angle_gamma         90 
_cell.entry_id            6CHG 
_cell.length_a            163.839 
_cell.length_b            138.319 
_cell.length_c            136.133 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CHG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C SG CYS 92 C CYS 939 1_555 I ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc2 C SG CYS 141 C CYS 988 1_555 I ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 C SG CYS 143 C CYS 990 1_555 I ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     6CHG 
_atom_sites.fract_transf_matrix[1][1]    0.006104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002517 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 7 SAM C 1 1101 1 SAM SAM . 
I 8 ZN C 1 1102 2 ZN ZN . 
J 9 HOH A 1 401 2 HOH HOH . 
K 9 HOH B 1 501 5 HOH HOH . 
K 9 HOH B 2 502 6 HOH HOH . 
K 9 HOH B 3 503 10 HOH HOH . 
L 9 HOH C 1 1201 3 HOH HOH . 
M 9 HOH D 1 501 4 HOH HOH . 
M 9 HOH D 2 502 1 HOH HOH . 
M 9 HOH D 3 503 8 HOH HOH . 
M 9 HOH D 4 504 7 HOH HOH . 
M 9 HOH D 5 505 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . H 7 -75.791 32.051 151.982 1 66.95 ? N SAM 1101 C 1 
HETATM 2 C CA SAM . . . H 7 -76.861 32.37 152.916 1 76.31 ? CA SAM 1101 C 1 
HETATM 3 C C SAM . . . H 7 -77.527 33.694 152.554 1 75.71 ? C SAM 1101 C 1 
HETATM 4 O O SAM . . . H 7 -78.28 34.266 153.344 1 79.85 ? O SAM 1101 C 1 
HETATM 5 O OXT SAM . . . H 7 -77.329 34.224 151.459 1 71.84 ? OXT SAM 1101 C 1 
HETATM 6 C CB SAM . . . H 7 -76.291 32.412 154.328 1 76.02 ? CB SAM 1101 C 1 
HETATM 7 C CG SAM . . . H 7 -76.149 31.036 154.976 1 84.8 ? CG SAM 1101 C 1 
HETATM 8 S SD SAM . . . H 7 -77.368 30.781 156.295 1 82.75 ? SD SAM 1101 C 1 
HETATM 9 C CE SAM . . . H 7 -76.322 30.619 157.766 1 98.54 ? CE SAM 1101 C 1 
HETATM 10 C C5' SAM . . . H 7 -77.879 29.051 156.133 1 91.92 ? C5' SAM 1101 C 1 
HETATM 11 C C4' SAM . . . H 7 -78.849 28.757 154.996 1 95.53 ? C4' SAM 1101 C 1 
HETATM 12 O O4' SAM . . . H 7 -78.187 28.782 153.745 1 98.85 ? O4' SAM 1101 C 1 
HETATM 13 C C3' SAM . . . H 7 -79.467 27.378 155.178 1 91.85 ? C3' SAM 1101 C 1 
HETATM 14 O O3' SAM . . . H 7 -80.829 27.463 155.524 1 99.84 ? O3' SAM 1101 C 1 
HETATM 15 C C2' SAM . . . H 7 -79.283 26.663 153.857 1 95.43 ? C2' SAM 1101 C 1 
HETATM 16 O O2' SAM . . . H 7 -80.535 26.437 153.241 1 113.53 ? O2' SAM 1101 C 1 
HETATM 17 C C1' SAM . . . H 7 -78.387 27.575 153.032 1 93.18 ? C1' SAM 1101 C 1 
HETATM 18 N N9 SAM . . . H 7 -77.077 26.931 152.836 1 94.61 ? N9 SAM 1101 C 1 
HETATM 19 C C8 SAM . . . H 7 -76.03 27.002 153.716 1 94.5 ? C8 SAM 1101 C 1 
HETATM 20 N N7 SAM . . . H 7 -74.997 26.294 153.22 1 90.69 ? N7 SAM 1101 C 1 
HETATM 21 C C5 SAM . . . H 7 -75.37 25.763 152.041 1 89.24 ? C5 SAM 1101 C 1 
HETATM 22 C C6 SAM . . . H 7 -74.688 24.961 151.142 1 103.97 ? C6 SAM 1101 C 1 
HETATM 23 N N6 SAM . . . H 7 -73.436 24.602 151.414 1 110.16 ? N6 SAM 1101 C 1 
HETATM 24 N N1 SAM . . . H 7 -75.312 24.548 149.985 1 106.89 ? N1 SAM 1101 C 1 
HETATM 25 C C2 SAM . . . H 7 -76.612 24.941 149.736 1 116.59 ? C2 SAM 1101 C 1 
HETATM 26 N N3 SAM . . . H 7 -77.287 25.742 150.64 1 114.4 ? N3 SAM 1101 C 1 
HETATM 27 C C4 SAM . . . H 7 -76.675 26.152 151.777 1 91.51 ? C4 SAM 1101 C 1 
HETATM 28 H HN1 SAM . . . H 7 -75.826 32.493 151.245 1 80.34 ? HN1 SAM 1101 C 1 
HETATM 29 H HA SAM . . . H 7 -77.542 31.667 152.88 1 91.57 ? HA SAM 1101 C 1 
HETATM 30 H HB1 SAM . . . H 7 -75.312 32.892 154.294 1 91.22 ? HB1 SAM 1101 C 1 
HETATM 31 H HB2 SAM . . . H 7 -76.939 33.032 154.947 1 91.22 ? HB2 SAM 1101 C 1 
HETATM 32 H HG1 SAM . . . H 7 -76.276 30.265 154.215 1 101.77 ? HG1 SAM 1101 C 1 
HETATM 33 H HG2 SAM . . . H 7 -75.145 30.934 155.388 1 101.77 ? HG2 SAM 1101 C 1 
HETATM 34 H HE1 SAM . . . H 7 -76.576 31.402 158.481 1 118.24 ? HE1 SAM 1101 C 1 
HETATM 35 H HE2 SAM . . . H 7 -76.486 29.643 158.224 1 118.24 ? HE2 SAM 1101 C 1 
HETATM 36 H HE3 SAM . . . H 7 -75.274 30.715 157.48 1 118.24 ? HE3 SAM 1101 C 1 
HETATM 37 H "H5'1" SAM . . . H 7 -76.987 28.439 155.994 1 110.3 ? "H5'1" SAM 1101 C 1 
HETATM 38 H "H5'2" SAM . . . H 7 -78.338 28.737 157.07 1 110.3 ? "H5'2" SAM 1101 C 1 
HETATM 39 H H4' SAM . . . H 7 -79.644 29.503 155.011 1 114.64 ? H4' SAM 1101 C 1 
HETATM 40 H H3' SAM . . . H 7 -78.916 26.842 155.951 1 110.22 ? H3' SAM 1101 C 1 
HETATM 41 H HO3' SAM . . . H 7 -81.37 27.036 154.827 1 119.81 ? HO3' SAM 1101 C 1 
HETATM 42 H H2' SAM . . . H 7 -78.769 25.718 154.031 1 114.52 ? H2' SAM 1101 C 1 
HETATM 43 H HO2' SAM . . . H 7 -80.573 26.922 152.391 1 136.23 ? HO2' SAM 1101 C 1 
HETATM 44 H H1' SAM . . . H 7 -78.861 27.774 152.071 1 111.82 ? H1' SAM 1101 C 1 
HETATM 45 H H8 SAM . . . H 7 -76.033 27.543 154.662 1 113.4 ? H8 SAM 1101 C 1 
HETATM 46 H HN61 SAM . . . H 7 -72.993 24.916 152.271 1 132.19 ? HN61 SAM 1101 C 1 
HETATM 47 H HN62 SAM . . . H 7 -72.926 24.01 150.766 1 132.19 ? HN62 SAM 1101 C 1 
HETATM 48 H H2 SAM . . . H 7 -77.109 24.619 148.822 1 139.91 ? H2 SAM 1101 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           461 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#