data_6CI5 # _model_server_result.job_id SrkKEXqbXMZD-W6ajsXSxA _model_server_result.datetime_utc '2024-10-11 19:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ci5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6CI5 # _exptl.entry_id 6CI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.429 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.47 _cell.angle_gamma 90 _cell.entry_id 6CI5 _cell.length_a 96.42 _cell.length_b 73.78 _cell.length_c 41.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O6' _chem_comp.formula_weight 445.429 _chem_comp.id 1YJ _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N8 1YJ sing 1 n n C7 C6 1YJ sing 2 n n N8 C8A 1YJ sing 3 n n C6 N5 1YJ sing 4 n n C6 C9 1YJ sing 5 n n N10 C9 1YJ sing 6 n n N10 C4' 1YJ sing 7 n n C3' C4' 1YJ doub 8 n y C3' C2' 1YJ sing 9 n y C8A C4A 1YJ doub 10 n n C8A N1 1YJ sing 11 n n N5 C4A 1YJ sing 12 n n C4' C5' 1YJ sing 13 n y C4A C4 1YJ sing 14 n n N1 C2 1YJ doub 15 n n C2' C1' 1YJ doub 16 n y C2 N3 1YJ sing 17 n n C2 N2 1YJ sing 18 n n C4 N3 1YJ sing 19 n n C4 O4 1YJ doub 20 n n C5' C6' 1YJ doub 21 n y C1' C6' 1YJ sing 22 n y C1' C11 1YJ sing 23 n n O11 C11 1YJ doub 24 n n C11 N 1YJ sing 25 n n N CA 1YJ sing 26 n n CA C 1YJ sing 27 n n CA CB 1YJ sing 28 n n C OX1 1YJ doub 29 n n C OX2 1YJ sing 30 n n CG CB 1YJ sing 31 n n CG CD 1YJ sing 32 n n OE1 CD 1YJ doub 33 n n CD OE2 1YJ sing 34 n n C7 H3 1YJ sing 35 n n C7 H4 1YJ sing 36 n n C6 H5 1YJ sing 37 n n N5 H6 1YJ sing 38 n n C9 H8 1YJ sing 39 n n C3' H9 1YJ sing 40 n n C2' H10 1YJ sing 41 n n C6' H11 1YJ sing 42 n n C5' H12 1YJ sing 43 n n N H13 1YJ sing 44 n n CA H14 1YJ sing 45 n n OX2 H15 1YJ sing 46 n n CB H16 1YJ sing 47 n n CB H17 1YJ sing 48 n n CG H18 1YJ sing 49 n n CG H19 1YJ sing 50 n n OE2 H20 1YJ sing 51 n n N2 H21 1YJ sing 52 n n N2 H22 1YJ sing 53 n n N3 H23 1YJ sing 54 n n N8 H1 1YJ sing 55 n n C9 H2 1YJ sing 56 n n N10 H7 1YJ sing 57 n n # _atom_sites.entry_id 6CI5 _atom_sites.fract_transf_matrix[1][1] 0.010371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002484 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 F5G A 1 302 2 F5G LIG . D 4 1YJ A 1 303 1 1YJ THF . E 5 HOH A 1 401 27 HOH HOH . E 5 HOH A 2 402 16 HOH HOH . E 5 HOH A 3 403 9 HOH HOH . E 5 HOH A 4 404 31 HOH HOH . E 5 HOH A 5 405 12 HOH HOH . E 5 HOH A 6 406 25 HOH HOH . E 5 HOH A 7 407 26 HOH HOH . E 5 HOH A 8 408 2 HOH HOH . E 5 HOH A 9 409 30 HOH HOH . E 5 HOH A 10 410 18 HOH HOH . E 5 HOH A 11 411 14 HOH HOH . E 5 HOH A 12 412 4 HOH HOH . E 5 HOH A 13 413 6 HOH HOH . E 5 HOH A 14 414 5 HOH HOH . E 5 HOH A 15 415 1 HOH HOH . E 5 HOH A 16 416 11 HOH HOH . E 5 HOH A 17 417 7 HOH HOH . E 5 HOH A 18 418 24 HOH HOH . E 5 HOH A 19 419 15 HOH HOH . E 5 HOH A 20 420 23 HOH HOH . E 5 HOH A 21 421 28 HOH HOH . E 5 HOH A 22 422 19 HOH HOH . E 5 HOH A 23 423 22 HOH HOH . E 5 HOH A 24 424 3 HOH HOH . E 5 HOH A 25 425 8 HOH HOH . E 5 HOH A 26 426 17 HOH HOH . E 5 HOH A 27 427 10 HOH HOH . E 5 HOH A 28 428 20 HOH HOH . E 5 HOH A 29 429 13 HOH HOH . E 5 HOH A 30 430 21 HOH HOH . E 5 HOH A 31 431 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 1YJ . . . D 4 27.756 15.495 12.66 1 70.38 ? N3 1YJ 303 A 1 HETATM 2 C C2 1YJ . . . D 4 26.471 15.223 11.912 1 70.6 ? C2 1YJ 303 A 1 HETATM 3 N N1 1YJ . . . D 4 26.344 15.613 10.474 1 65.87 ? N1 1YJ 303 A 1 HETATM 4 C C8A 1YJ . . . D 4 27.456 16.258 9.779 1 65.12 ? C8A 1YJ 303 A 1 HETATM 5 C C4A 1YJ . . . D 4 28.756 16.54 10.534 1 63.5 ? C4A 1YJ 303 A 1 HETATM 6 C C4 1YJ . . . D 4 28.882 16.143 11.981 1 68.66 ? C4 1YJ 303 A 1 HETATM 7 N N8 1YJ . . . D 4 27.297 16.605 8.466 1 62.98 ? N8 1YJ 303 A 1 HETATM 8 C C7 1YJ . . . D 4 28.54 17.289 7.777 1 62.23 ? C7 1YJ 303 A 1 HETATM 9 C C6 1YJ . . . D 4 29.415 17.962 8.623 1 58.99 ? C6 1YJ 303 A 1 HETATM 10 N N5 1YJ . . . D 4 29.809 17.14 9.909 1 62.44 ? N5 1YJ 303 A 1 HETATM 11 C C9 1YJ . . . D 4 28.778 19.284 9.033 1 63.89 ? C9 1YJ 303 A 1 HETATM 12 O O4 1YJ . . . D 4 29.887 16.355 12.572 1 63.05 ? O4 1YJ 303 A 1 HETATM 13 N N2 1YJ . . . D 4 25.358 14.581 12.587 1 78.49 ? N2 1YJ 303 A 1 HETATM 14 H H3 1YJ . . . D 4 29.042 16.601 7.313 1 74.16 ? H3 1YJ 303 A 1 HETATM 15 H H4 1YJ . . . D 4 28.209 17.923 7.122 1 74.16 ? H4 1YJ 303 A 1 HETATM 16 H H5 1YJ . . . D 4 30.226 18.152 8.127 1 70.27 ? H5 1YJ 303 A 1 HETATM 17 H H6 1YJ . . . D 4 30.646 17.073 10.202 1 74.41 ? H6 1YJ 303 A 1 HETATM 18 H H8 1YJ . . . D 4 27.82 19.166 9.128 1 76.16 ? H8 1YJ 303 A 1 HETATM 19 H H21 1YJ . . . D 4 25.428 14.357 13.415 1 93.67 ? H21 1YJ 303 A 1 HETATM 20 H H22 1YJ . . . D 4 24.627 14.427 12.161 1 93.67 ? H22 1YJ 303 A 1 HETATM 21 H H23 1YJ . . . D 4 27.826 15.271 13.487 1 83.94 ? H23 1YJ 303 A 1 HETATM 22 H H1 1YJ . . . D 4 26.544 16.44 8.022 1 75.06 ? H1 1YJ 303 A 1 HETATM 23 H H2 1YJ . . . D 4 28.956 19.954 8.354 1 76.16 ? H2 1YJ 303 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #