data_6CI6
#
_model_server_result.job_id            dX38c0UkPldbSr6KkmXvmw 
_model_server_result.datetime_utc      '2024-11-18 17:35:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ci6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":606}' 
#
_entry.id    6CI6 
#
_exptl.entry_id    6CI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.286 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nabumetone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6CI6 
_cell.length_a            93.879 
_cell.length_b            93.879 
_cell.length_c            140.787 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C15 H16 O2' 
_chem_comp.formula_weight    228.286 
_chem_comp.id                NBO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nabumetone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-(6-methoxynaphthalen-2-yl)butan-2-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NBO sing 246 n n 
O1 C2 NBO doub 247 n n 
C2 C3 NBO sing 248 n n 
C3 C4 NBO sing 249 n n 
C4 C1' NBO sing 250 n n 
C10' C1' NBO doub 251 n y 
C10' C9' NBO sing 252 n y 
C1' C2' NBO sing 253 n y 
C11' O2' NBO sing 254 n n 
C2' C3' NBO doub 255 n y 
O2' C6' NBO sing 256 n n 
C3' C4' NBO sing 257 n y 
C3' C8' NBO sing 258 n y 
C4' C5' NBO doub 259 n y 
C5' C6' NBO sing 260 n y 
C6' C7' NBO doub 261 n y 
C7' C8' NBO sing 262 n y 
C8' C9' NBO doub 263 n y 
C1 H1 NBO sing 264 n n 
C1 H1A NBO sing 265 n n 
C1 H1B NBO sing 266 n n 
C3 H3 NBO sing 267 n n 
C3 H3A NBO sing 268 n n 
C4 H4 NBO sing 269 n n 
C4 H4A NBO sing 270 n n 
C10' H10' NBO sing 271 n n 
C11' H11' NBO sing 272 n n 
C11' H11A NBO sing 273 n n 
C11' H11B NBO sing 274 n n 
C2' H2' NBO sing 275 n n 
C4' H4' NBO sing 276 n n 
C5' H5' NBO sing 277 n n 
C7' H7' NBO sing 278 n n 
C9' H9' NBO sing 279 n n 
#
_atom_sites.entry_id                     6CI6 
_atom_sites.fract_transf_matrix[1][1]    0.010652 
_atom_sites.fract_transf_matrix[1][2]    0.00615 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007103 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 601 1 SO4 SO4 . 
C 2 SO4 A 1 602 2 SO4 SO4 . 
D 2 SO4 A 1 603 6 SO4 SO4 . 
E 2 SO4 A 1 604 7 SO4 SO4 . 
F 2 SO4 A 1 605 8 SO4 SO4 . 
G 3 NBO A 1 606 1 NBO NBO . 
H 3 NBO A 1 607 2 NBO NBO . 
I 4 TRS A 1 608 3 TRS TRS . 
J 5 KNA A 1 609 1 KNA DKA . 
K 6 UNX A 1 610 3 UNX UNX . 
L 6 UNX A 1 611 4 UNX UNX . 
M 6 UNX A 1 612 9 UNX UNX . 
N 6 UNX A 1 613 17 UNX UNX . 
O 6 UNX A 1 614 18 UNX UNX . 
P 6 UNX A 1 615 21 UNX UNX . 
Q 6 UNX A 1 616 22 UNX UNX . 
R 6 UNX A 1 617 23 UNX UNX . 
S 7 HOH A 1 701 659 HOH HOH . 
S 7 HOH A 2 702 188 HOH HOH . 
S 7 HOH A 3 703 787 HOH HOH . 
S 7 HOH A 4 704 797 HOH HOH . 
S 7 HOH A 5 705 169 HOH HOH . 
S 7 HOH A 6 706 200 HOH HOH . 
S 7 HOH A 7 707 641 HOH HOH . 
S 7 HOH A 8 708 226 HOH HOH . 
S 7 HOH A 9 709 198 HOH HOH . 
S 7 HOH A 10 710 658 HOH HOH . 
S 7 HOH A 11 711 111 HOH HOH . 
S 7 HOH A 12 712 754 HOH HOH . 
S 7 HOH A 13 713 638 HOH HOH . 
S 7 HOH A 14 714 788 HOH HOH . 
S 7 HOH A 15 715 54 HOH HOH . 
S 7 HOH A 16 716 251 HOH HOH . 
S 7 HOH A 17 717 29 HOH HOH . 
S 7 HOH A 18 718 557 HOH HOH . 
S 7 HOH A 19 719 69 HOH HOH . 
S 7 HOH A 20 720 34 HOH HOH . 
S 7 HOH A 21 721 56 HOH HOH . 
S 7 HOH A 22 722 35 HOH HOH . 
S 7 HOH A 23 723 113 HOH HOH . 
S 7 HOH A 24 724 773 HOH HOH . 
S 7 HOH A 25 725 758 HOH HOH . 
S 7 HOH A 26 726 55 HOH HOH . 
S 7 HOH A 27 727 747 HOH HOH . 
S 7 HOH A 28 728 201 HOH HOH . 
S 7 HOH A 29 729 33 HOH HOH . 
S 7 HOH A 30 730 794 HOH HOH . 
S 7 HOH A 31 731 23 HOH HOH . 
S 7 HOH A 32 732 326 HOH HOH . 
S 7 HOH A 33 733 662 HOH HOH . 
S 7 HOH A 34 734 146 HOH HOH . 
S 7 HOH A 35 735 417 HOH HOH . 
S 7 HOH A 36 736 727 HOH HOH . 
S 7 HOH A 37 737 9 HOH HOH . 
S 7 HOH A 38 738 24 HOH HOH . 
S 7 HOH A 39 739 795 HOH HOH . 
S 7 HOH A 40 740 254 HOH HOH . 
S 7 HOH A 41 741 777 HOH HOH . 
S 7 HOH A 42 742 57 HOH HOH . 
S 7 HOH A 43 743 80 HOH HOH . 
S 7 HOH A 44 744 27 HOH HOH . 
S 7 HOH A 45 745 514 HOH HOH . 
S 7 HOH A 46 746 93 HOH HOH . 
S 7 HOH A 47 747 16 HOH HOH . 
S 7 HOH A 48 748 13 HOH HOH . 
S 7 HOH A 49 749 15 HOH HOH . 
S 7 HOH A 50 750 771 HOH HOH . 
S 7 HOH A 51 751 770 HOH HOH . 
S 7 HOH A 52 752 28 HOH HOH . 
S 7 HOH A 53 753 358 HOH HOH . 
S 7 HOH A 54 754 276 HOH HOH . 
S 7 HOH A 55 755 79 HOH HOH . 
S 7 HOH A 56 756 199 HOH HOH . 
S 7 HOH A 57 757 633 HOH HOH . 
S 7 HOH A 58 758 735 HOH HOH . 
S 7 HOH A 59 759 775 HOH HOH . 
S 7 HOH A 60 760 249 HOH HOH . 
S 7 HOH A 61 761 644 HOH HOH . 
S 7 HOH A 62 762 68 HOH HOH . 
S 7 HOH A 63 763 740 HOH HOH . 
S 7 HOH A 64 764 742 HOH HOH . 
S 7 HOH A 65 765 116 HOH HOH . 
S 7 HOH A 66 766 233 HOH HOH . 
S 7 HOH A 67 767 329 HOH HOH . 
S 7 HOH A 68 768 260 HOH HOH . 
S 7 HOH A 69 769 291 HOH HOH . 
S 7 HOH A 70 770 255 HOH HOH . 
S 7 HOH A 71 771 793 HOH HOH . 
S 7 HOH A 72 772 772 HOH HOH . 
S 7 HOH A 73 773 730 HOH HOH . 
S 7 HOH A 74 774 753 HOH HOH . 
S 7 HOH A 75 775 319 HOH HOH . 
S 7 HOH A 76 776 3 HOH HOH . 
S 7 HOH A 77 777 776 HOH HOH . 
S 7 HOH A 78 778 240 HOH HOH . 
S 7 HOH A 79 779 791 HOH HOH . 
S 7 HOH A 80 780 796 HOH HOH . 
S 7 HOH A 81 781 244 HOH HOH . 
S 7 HOH A 82 782 65 HOH HOH . 
S 7 HOH A 83 783 237 HOH HOH . 
S 7 HOH A 84 784 778 HOH HOH . 
S 7 HOH A 85 785 717 HOH HOH . 
S 7 HOH A 86 786 780 HOH HOH . 
S 7 HOH A 87 787 158 HOH HOH . 
S 7 HOH A 88 788 173 HOH HOH . 
S 7 HOH A 89 789 731 HOH HOH . 
S 7 HOH A 90 790 774 HOH HOH . 
S 7 HOH A 91 791 724 HOH HOH . 
S 7 HOH A 92 792 273 HOH HOH . 
S 7 HOH A 93 793 779 HOH HOH . 
S 7 HOH A 94 794 290 HOH HOH . 
S 7 HOH A 95 795 725 HOH HOH . 
S 7 HOH A 96 796 640 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NBO . . . G 3 30.628 -0.018 67.122 1 78.82 ? C1 NBO 606 A 1 
HETATM 2 O O1 NBO . . . G 3 31.543 2.155 66.967 1 76.27 ? O1 NBO 606 A 1 
HETATM 3 C C2 NBO . . . G 3 31.653 1.03 67.397 1 76.53 ? C2 NBO 606 A 1 
HETATM 4 C C3 NBO . . . G 3 32.835 0.605 68.219 1 72.28 ? C3 NBO 606 A 1 
HETATM 5 C C4 NBO . . . G 3 33.657 1.751 68.807 1 70.07 ? C4 NBO 606 A 1 
HETATM 6 C C10' NBO . . . G 3 35.704 0.639 69.763 1 64.31 ? C10' NBO 606 A 1 
HETATM 7 C C1' NBO . . . G 3 35.123 1.41 68.758 1 66.04 ? C1' NBO 606 A 1 
HETATM 8 C C11' NBO . . . G 3 42.179 0.317 68.464 1 62.45 ? C11' NBO 606 A 1 
HETATM 9 C C2' NBO . . . G 3 35.898 1.839 67.709 1 63.14 ? C2' NBO 606 A 1 
HETATM 10 O O2' NBO . . . G 3 41.387 1.023 67.508 1 62.93 ? O2' NBO 606 A 1 
HETATM 11 C C3' NBO . . . G 3 37.275 1.527 67.635 1 61.29 ? C3' NBO 606 A 1 
HETATM 12 C C4' NBO . . . G 3 38.112 2.013 66.601 1 60.01 ? C4' NBO 606 A 1 
HETATM 13 C C5' NBO . . . G 3 39.454 1.775 66.617 1 58.92 ? C5' NBO 606 A 1 
HETATM 14 C C6' NBO . . . G 3 40.02 1.039 67.646 1 60.63 ? C6' NBO 606 A 1 
HETATM 15 C C7' NBO . . . G 3 39.247 0.51 68.651 1 60.22 ? C7' NBO 606 A 1 
HETATM 16 C C8' NBO . . . G 3 37.856 0.754 68.672 1 60.97 ? C8' NBO 606 A 1 
HETATM 17 C C9' NBO . . . G 3 37.026 0.313 69.73 1 62.3 ? C9' NBO 606 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#