data_6CI6
#
_model_server_result.job_id            LidiREnMfsZU94cBIGKQVg 
_model_server_result.datetime_utc      '2024-11-18 17:40:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ci6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    6CI6 
#
_exptl.entry_id    6CI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              158.238 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6CI6 
_cell.length_a            93.879 
_cell.length_b            93.879 
_cell.length_c            140.787 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C9 H18 O2' 
_chem_comp.formula_weight    158.238 
_chem_comp.id                KNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'nonanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 KNA doub 173 n n 
C1 C2 KNA sing 174 n n 
C1 O1 KNA sing 175 n n 
O1 HO1 KNA sing 176 n n 
C3 C2 KNA sing 177 n n 
C2 H2 KNA sing 178 n n 
C2 H2A KNA sing 179 n n 
C3 C4 KNA sing 180 n n 
C3 H3 KNA sing 181 n n 
C3 H3A KNA sing 182 n n 
C5 C4 KNA sing 183 n n 
C4 H4 KNA sing 184 n n 
C4 H4A KNA sing 185 n n 
C5 C6 KNA sing 186 n n 
C5 H5 KNA sing 187 n n 
C5 H5A KNA sing 188 n n 
C6 C7 KNA sing 189 n n 
C6 H6 KNA sing 190 n n 
C6 H6A KNA sing 191 n n 
C7 C8 KNA sing 192 n n 
C7 H7 KNA sing 193 n n 
C7 H7A KNA sing 194 n n 
C8 C9 KNA sing 195 n n 
C8 H8 KNA sing 196 n n 
C8 H8A KNA sing 197 n n 
C9 H9 KNA sing 198 n n 
C9 H9A KNA sing 199 n n 
C9 H9B KNA sing 200 n n 
#
_atom_sites.entry_id                     6CI6 
_atom_sites.fract_transf_matrix[1][1]    0.010652 
_atom_sites.fract_transf_matrix[1][2]    0.00615 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007103 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 601 1 SO4 SO4 . 
C 2 SO4 A 1 602 2 SO4 SO4 . 
D 2 SO4 A 1 603 6 SO4 SO4 . 
E 2 SO4 A 1 604 7 SO4 SO4 . 
F 2 SO4 A 1 605 8 SO4 SO4 . 
G 3 NBO A 1 606 1 NBO NBO . 
H 3 NBO A 1 607 2 NBO NBO . 
I 4 TRS A 1 608 3 TRS TRS . 
J 5 KNA A 1 609 1 KNA DKA . 
K 6 UNX A 1 610 3 UNX UNX . 
L 6 UNX A 1 611 4 UNX UNX . 
M 6 UNX A 1 612 9 UNX UNX . 
N 6 UNX A 1 613 17 UNX UNX . 
O 6 UNX A 1 614 18 UNX UNX . 
P 6 UNX A 1 615 21 UNX UNX . 
Q 6 UNX A 1 616 22 UNX UNX . 
R 6 UNX A 1 617 23 UNX UNX . 
S 7 HOH A 1 701 659 HOH HOH . 
S 7 HOH A 2 702 188 HOH HOH . 
S 7 HOH A 3 703 787 HOH HOH . 
S 7 HOH A 4 704 797 HOH HOH . 
S 7 HOH A 5 705 169 HOH HOH . 
S 7 HOH A 6 706 200 HOH HOH . 
S 7 HOH A 7 707 641 HOH HOH . 
S 7 HOH A 8 708 226 HOH HOH . 
S 7 HOH A 9 709 198 HOH HOH . 
S 7 HOH A 10 710 658 HOH HOH . 
S 7 HOH A 11 711 111 HOH HOH . 
S 7 HOH A 12 712 754 HOH HOH . 
S 7 HOH A 13 713 638 HOH HOH . 
S 7 HOH A 14 714 788 HOH HOH . 
S 7 HOH A 15 715 54 HOH HOH . 
S 7 HOH A 16 716 251 HOH HOH . 
S 7 HOH A 17 717 29 HOH HOH . 
S 7 HOH A 18 718 557 HOH HOH . 
S 7 HOH A 19 719 69 HOH HOH . 
S 7 HOH A 20 720 34 HOH HOH . 
S 7 HOH A 21 721 56 HOH HOH . 
S 7 HOH A 22 722 35 HOH HOH . 
S 7 HOH A 23 723 113 HOH HOH . 
S 7 HOH A 24 724 773 HOH HOH . 
S 7 HOH A 25 725 758 HOH HOH . 
S 7 HOH A 26 726 55 HOH HOH . 
S 7 HOH A 27 727 747 HOH HOH . 
S 7 HOH A 28 728 201 HOH HOH . 
S 7 HOH A 29 729 33 HOH HOH . 
S 7 HOH A 30 730 794 HOH HOH . 
S 7 HOH A 31 731 23 HOH HOH . 
S 7 HOH A 32 732 326 HOH HOH . 
S 7 HOH A 33 733 662 HOH HOH . 
S 7 HOH A 34 734 146 HOH HOH . 
S 7 HOH A 35 735 417 HOH HOH . 
S 7 HOH A 36 736 727 HOH HOH . 
S 7 HOH A 37 737 9 HOH HOH . 
S 7 HOH A 38 738 24 HOH HOH . 
S 7 HOH A 39 739 795 HOH HOH . 
S 7 HOH A 40 740 254 HOH HOH . 
S 7 HOH A 41 741 777 HOH HOH . 
S 7 HOH A 42 742 57 HOH HOH . 
S 7 HOH A 43 743 80 HOH HOH . 
S 7 HOH A 44 744 27 HOH HOH . 
S 7 HOH A 45 745 514 HOH HOH . 
S 7 HOH A 46 746 93 HOH HOH . 
S 7 HOH A 47 747 16 HOH HOH . 
S 7 HOH A 48 748 13 HOH HOH . 
S 7 HOH A 49 749 15 HOH HOH . 
S 7 HOH A 50 750 771 HOH HOH . 
S 7 HOH A 51 751 770 HOH HOH . 
S 7 HOH A 52 752 28 HOH HOH . 
S 7 HOH A 53 753 358 HOH HOH . 
S 7 HOH A 54 754 276 HOH HOH . 
S 7 HOH A 55 755 79 HOH HOH . 
S 7 HOH A 56 756 199 HOH HOH . 
S 7 HOH A 57 757 633 HOH HOH . 
S 7 HOH A 58 758 735 HOH HOH . 
S 7 HOH A 59 759 775 HOH HOH . 
S 7 HOH A 60 760 249 HOH HOH . 
S 7 HOH A 61 761 644 HOH HOH . 
S 7 HOH A 62 762 68 HOH HOH . 
S 7 HOH A 63 763 740 HOH HOH . 
S 7 HOH A 64 764 742 HOH HOH . 
S 7 HOH A 65 765 116 HOH HOH . 
S 7 HOH A 66 766 233 HOH HOH . 
S 7 HOH A 67 767 329 HOH HOH . 
S 7 HOH A 68 768 260 HOH HOH . 
S 7 HOH A 69 769 291 HOH HOH . 
S 7 HOH A 70 770 255 HOH HOH . 
S 7 HOH A 71 771 793 HOH HOH . 
S 7 HOH A 72 772 772 HOH HOH . 
S 7 HOH A 73 773 730 HOH HOH . 
S 7 HOH A 74 774 753 HOH HOH . 
S 7 HOH A 75 775 319 HOH HOH . 
S 7 HOH A 76 776 3 HOH HOH . 
S 7 HOH A 77 777 776 HOH HOH . 
S 7 HOH A 78 778 240 HOH HOH . 
S 7 HOH A 79 779 791 HOH HOH . 
S 7 HOH A 80 780 796 HOH HOH . 
S 7 HOH A 81 781 244 HOH HOH . 
S 7 HOH A 82 782 65 HOH HOH . 
S 7 HOH A 83 783 237 HOH HOH . 
S 7 HOH A 84 784 778 HOH HOH . 
S 7 HOH A 85 785 717 HOH HOH . 
S 7 HOH A 86 786 780 HOH HOH . 
S 7 HOH A 87 787 158 HOH HOH . 
S 7 HOH A 88 788 173 HOH HOH . 
S 7 HOH A 89 789 731 HOH HOH . 
S 7 HOH A 90 790 774 HOH HOH . 
S 7 HOH A 91 791 724 HOH HOH . 
S 7 HOH A 92 792 273 HOH HOH . 
S 7 HOH A 93 793 779 HOH HOH . 
S 7 HOH A 94 794 290 HOH HOH . 
S 7 HOH A 95 795 725 HOH HOH . 
S 7 HOH A 96 796 640 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KNA . . . J 5 28.249 12.592 82.583 1 79.49 ? C1 KNA 609 A 1 
HETATM 2 O O1 KNA . . . J 5 27.357 11.957 83.188 1 76.75 ? O1 KNA 609 A 1 
HETATM 3 C C2 KNA . . . J 5 29.682 12.174 82.814 1 80.11 ? C2 KNA 609 A 1 
HETATM 4 O O2 KNA . . . J 5 28.018 13.547 81.802 1 77.64 ? O2 KNA 609 A 1 
HETATM 5 C C3 KNA . . . J 5 30.294 12.895 84.01 1 78.38 ? C3 KNA 609 A 1 
HETATM 6 C C4 KNA . . . J 5 30.326 11.971 85.219 1 77.74 ? C4 KNA 609 A 1 
HETATM 7 C C5 KNA . . . J 5 30.571 12.755 86.5 1 76.38 ? C5 KNA 609 A 1 
HETATM 8 C C6 KNA . . . J 5 30.916 11.805 87.642 1 74.97 ? C6 KNA 609 A 1 
HETATM 9 C C7 KNA . . . J 5 31.208 12.591 88.913 1 73.77 ? C7 KNA 609 A 1 
HETATM 10 C C8 KNA . . . J 5 31.95 11.743 89.938 1 73.17 ? C8 KNA 609 A 1 
HETATM 11 C C9 KNA . . . J 5 32.406 12.602 91.114 1 71.83 ? C9 KNA 609 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#