data_6CII # _model_server_result.job_id HvGrVK6lh2SDteDUbWJLvQ _model_server_result.datetime_utc '2024-11-16 17:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6CII # _exptl.entry_id 6CII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CII _cell.length_a 45.992 _cell.length_b 45.992 _cell.length_c 121.277 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CII _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 76 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.061 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 6CII _atom_sites.fract_transf_matrix[1][1] 0.021743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 CYN A 1 202 202 CYN CYN . D 4 HOH A 1 301 138 HOH HOH . D 4 HOH A 2 302 137 HOH HOH . D 4 HOH A 3 303 42 HOH HOH . D 4 HOH A 4 304 105 HOH HOH . D 4 HOH A 5 305 79 HOH HOH . D 4 HOH A 6 306 83 HOH HOH . D 4 HOH A 7 307 86 HOH HOH . D 4 HOH A 8 308 62 HOH HOH . D 4 HOH A 9 309 132 HOH HOH . D 4 HOH A 10 310 101 HOH HOH . D 4 HOH A 11 311 29 HOH HOH . D 4 HOH A 12 312 69 HOH HOH . D 4 HOH A 13 313 67 HOH HOH . D 4 HOH A 14 314 20 HOH HOH . D 4 HOH A 15 315 44 HOH HOH . D 4 HOH A 16 316 38 HOH HOH . D 4 HOH A 17 317 121 HOH HOH . D 4 HOH A 18 318 22 HOH HOH . D 4 HOH A 19 319 5 HOH HOH . D 4 HOH A 20 320 18 HOH HOH . D 4 HOH A 21 321 103 HOH HOH . D 4 HOH A 22 322 12 HOH HOH . D 4 HOH A 23 323 64 HOH HOH . D 4 HOH A 24 324 25 HOH HOH . D 4 HOH A 25 325 106 HOH HOH . D 4 HOH A 26 326 31 HOH HOH . D 4 HOH A 27 327 3 HOH HOH . D 4 HOH A 28 328 8 HOH HOH . D 4 HOH A 29 329 26 HOH HOH . D 4 HOH A 30 330 78 HOH HOH . D 4 HOH A 31 331 88 HOH HOH . D 4 HOH A 32 332 36 HOH HOH . D 4 HOH A 33 333 2 HOH HOH . D 4 HOH A 34 334 82 HOH HOH . D 4 HOH A 35 335 49 HOH HOH . D 4 HOH A 36 336 50 HOH HOH . D 4 HOH A 37 337 45 HOH HOH . D 4 HOH A 38 338 68 HOH HOH . D 4 HOH A 39 339 99 HOH HOH . D 4 HOH A 40 340 53 HOH HOH . D 4 HOH A 41 341 13 HOH HOH . D 4 HOH A 42 342 119 HOH HOH . D 4 HOH A 43 343 19 HOH HOH . D 4 HOH A 44 344 6 HOH HOH . D 4 HOH A 45 345 96 HOH HOH . D 4 HOH A 46 346 80 HOH HOH . D 4 HOH A 47 347 125 HOH HOH . D 4 HOH A 48 348 51 HOH HOH . D 4 HOH A 49 349 84 HOH HOH . D 4 HOH A 50 350 28 HOH HOH . D 4 HOH A 51 351 102 HOH HOH . D 4 HOH A 52 352 21 HOH HOH . D 4 HOH A 53 353 46 HOH HOH . D 4 HOH A 54 354 4 HOH HOH . D 4 HOH A 55 355 90 HOH HOH . D 4 HOH A 56 356 9 HOH HOH . D 4 HOH A 57 357 52 HOH HOH . D 4 HOH A 58 358 34 HOH HOH . D 4 HOH A 59 359 35 HOH HOH . D 4 HOH A 60 360 109 HOH HOH . D 4 HOH A 61 361 14 HOH HOH . D 4 HOH A 62 362 10 HOH HOH . D 4 HOH A 63 363 41 HOH HOH . D 4 HOH A 64 364 17 HOH HOH . D 4 HOH A 65 365 37 HOH HOH . D 4 HOH A 66 366 1 HOH HOH . D 4 HOH A 67 367 66 HOH HOH . D 4 HOH A 68 368 81 HOH HOH . D 4 HOH A 69 369 39 HOH HOH . D 4 HOH A 70 370 104 HOH HOH . D 4 HOH A 71 371 59 HOH HOH . D 4 HOH A 72 372 77 HOH HOH . D 4 HOH A 73 373 23 HOH HOH . D 4 HOH A 74 374 40 HOH HOH . D 4 HOH A 75 375 141 HOH HOH . D 4 HOH A 76 376 87 HOH HOH . D 4 HOH A 77 377 115 HOH HOH . D 4 HOH A 78 378 24 HOH HOH . D 4 HOH A 79 379 139 HOH HOH . D 4 HOH A 80 380 92 HOH HOH . D 4 HOH A 81 381 97 HOH HOH . D 4 HOH A 82 382 54 HOH HOH . D 4 HOH A 83 383 57 HOH HOH . D 4 HOH A 84 384 27 HOH HOH . D 4 HOH A 85 385 93 HOH HOH . D 4 HOH A 86 386 74 HOH HOH . D 4 HOH A 87 387 47 HOH HOH . D 4 HOH A 88 388 76 HOH HOH . D 4 HOH A 89 389 89 HOH HOH . D 4 HOH A 90 390 75 HOH HOH . D 4 HOH A 91 391 107 HOH HOH . D 4 HOH A 92 392 114 HOH HOH . D 4 HOH A 93 393 136 HOH HOH . D 4 HOH A 94 394 7 HOH HOH . D 4 HOH A 95 395 133 HOH HOH . D 4 HOH A 96 396 118 HOH HOH . D 4 HOH A 97 397 33 HOH HOH . D 4 HOH A 98 398 126 HOH HOH . D 4 HOH A 99 399 127 HOH HOH . D 4 HOH A 100 400 122 HOH HOH . D 4 HOH A 101 401 135 HOH HOH . D 4 HOH A 102 402 128 HOH HOH . D 4 HOH A 103 403 142 HOH HOH . D 4 HOH A 104 404 130 HOH HOH . D 4 HOH A 105 405 129 HOH HOH . D 4 HOH A 106 406 108 HOH HOH . D 4 HOH A 107 407 140 HOH HOH . D 4 HOH A 108 408 95 HOH HOH . D 4 HOH A 109 409 55 HOH HOH . D 4 HOH A 110 410 110 HOH HOH . D 4 HOH A 111 411 32 HOH HOH . D 4 HOH A 112 412 58 HOH HOH . D 4 HOH A 113 413 124 HOH HOH . D 4 HOH A 114 414 134 HOH HOH . D 4 HOH A 115 415 70 HOH HOH . D 4 HOH A 116 416 116 HOH HOH . D 4 HOH A 117 417 63 HOH HOH . D 4 HOH A 118 418 15 HOH HOH . D 4 HOH A 119 419 113 HOH HOH . D 4 HOH A 120 420 112 HOH HOH . D 4 HOH A 121 421 30 HOH HOH . D 4 HOH A 122 422 71 HOH HOH . D 4 HOH A 123 423 131 HOH HOH . D 4 HOH A 124 424 65 HOH HOH . D 4 HOH A 125 425 91 HOH HOH . D 4 HOH A 126 426 56 HOH HOH . D 4 HOH A 127 427 98 HOH HOH . D 4 HOH A 128 428 123 HOH HOH . D 4 HOH A 129 429 16 HOH HOH . D 4 HOH A 130 430 61 HOH HOH . D 4 HOH A 131 431 117 HOH HOH . D 4 HOH A 132 432 43 HOH HOH . D 4 HOH A 133 433 100 HOH HOH . D 4 HOH A 134 434 85 HOH HOH . D 4 HOH A 135 435 60 HOH HOH . D 4 HOH A 136 436 111 HOH HOH . D 4 HOH A 137 437 72 HOH HOH . D 4 HOH A 138 438 11 HOH HOH . D 4 HOH A 139 439 94 HOH HOH . D 4 HOH A 140 440 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 2.239 26.243 38.5 1 10.16 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 2.135 27.211 43.295 1 10.21 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -0.197 22.93 44.051 1 9.43 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 0.841 21.633 39.393 1 12.52 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 2.363 26.845 39.73 1 11.67 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 2.966 28.139 39.943 1 11.09 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 2.945 28.393 41.25 1 10.73 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 2.348 27.288 41.939 1 11 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 3.468 29.638 42 1 13.11 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 3.5 29.022 38.791 1 14.43 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 2.312 29.83 38.248 1 18.94 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 2.8 30.858 37.269 1 19.92 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 3.137 31.977 37.724 1 22.88 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 2.87 30.547 36.053 1 27.28 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 1.517 26.116 43.878 1 9.9 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 1.338 25.959 45.293 1 15.01 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 0.713 24.804 45.527 1 12.14 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 0.456 24.15 44.254 1 10.16 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 1.801 26.991 46.342 1 15.07 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 0.354 24.323 46.945 1 15.53 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 0.196 23.039 47.246 1 20.24 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -0.096 22.243 42.852 1 10.84 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -0.61 20.911 42.591 1 11.55 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -0.328 20.58 41.315 1 11.88 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 0.407 21.665 40.71 1 9.25 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -1.389 20.097 43.653 1 12.57 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -0.637 19.272 40.534 1 11.55 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -0.397 18.117 41.135 1 19.33 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 1.35 22.791 38.813 1 8.92 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 1.813 22.833 37.458 1 11.08 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 2.203 24.096 37.178 1 10.88 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 1.986 24.898 38.351 1 9.01 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 1.86 21.606 36.518 1 14.78 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 2.776 24.584 35.835 1 12.14 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 1.634 24.764 34.834 1 18.74 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 2.199 25.214 33.503 1 27.45 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 1.851 24.595 32.466 1 33.45 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 2.988 26.194 33.483 1 24.25 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 1.995 26.371 40.979 1 9.51 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 0.975 24.978 43.265 1 13.54 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 0.492 22.692 41.66 1 9.03 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 1.474 24.077 39.343 1 8.71 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 1.244 24.556 41.292 1 11.65 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #