data_6CJ3 # _model_server_result.job_id vZCOIo6coFH5BYw8Agydpw _model_server_result.datetime_utc '2024-11-06 21:34:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6CJ3 # _exptl.entry_id 6CJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CJ3 _cell.length_a 91.992 _cell.length_b 91.992 _cell.length_c 221.137 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -45.996 -79.667409 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.996 -79.667409 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 120 A GLU 112 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 A OD2 ASP 146 A ASP 138 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 B MG MG . A MG 301 1_555 F O PYR . A PYR 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 B MG MG . A MG 301 1_555 F O3 PYR . A PYR 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 283 n n C OXT PYR sing 284 n n C CA PYR sing 285 n n OXT HXT PYR sing 286 n n CA O3 PYR doub 287 n n CA CB PYR sing 288 n n CB HB1 PYR sing 289 n n CB HB2 PYR sing 290 n n CB HB3 PYR sing 291 n n # _atom_sites.entry_id 6CJ3 _atom_sites.fract_transf_matrix[1][1] 0.010871 _atom_sites.fract_transf_matrix[1][2] 0.006276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 3 ACT A 1 302 1 ACT ACT . D 3 ACT A 1 303 3 ACT ACT . E 3 ACT A 1 304 4 ACT ACT . F 4 PYR A 1 305 1 PYR PYR . G 4 PYR A 1 306 2 PYR PYR . H 5 HOH A 1 401 124 HOH HOH . H 5 HOH A 2 402 121 HOH HOH . H 5 HOH A 3 403 62 HOH HOH . H 5 HOH A 4 404 100 HOH HOH . H 5 HOH A 5 405 37 HOH HOH . H 5 HOH A 6 406 127 HOH HOH . H 5 HOH A 7 407 91 HOH HOH . H 5 HOH A 8 408 136 HOH HOH . H 5 HOH A 9 409 129 HOH HOH . H 5 HOH A 10 410 125 HOH HOH . H 5 HOH A 11 411 140 HOH HOH . H 5 HOH A 12 412 7 HOH HOH . H 5 HOH A 13 413 138 HOH HOH . H 5 HOH A 14 414 54 HOH HOH . H 5 HOH A 15 415 63 HOH HOH . H 5 HOH A 16 416 22 HOH HOH . H 5 HOH A 17 417 11 HOH HOH . H 5 HOH A 18 418 36 HOH HOH . H 5 HOH A 19 419 64 HOH HOH . H 5 HOH A 20 420 42 HOH HOH . H 5 HOH A 21 421 28 HOH HOH . H 5 HOH A 22 422 116 HOH HOH . H 5 HOH A 23 423 120 HOH HOH . H 5 HOH A 24 424 1 HOH HOH . H 5 HOH A 25 425 53 HOH HOH . H 5 HOH A 26 426 61 HOH HOH . H 5 HOH A 27 427 18 HOH HOH . H 5 HOH A 28 428 98 HOH HOH . H 5 HOH A 29 429 31 HOH HOH . H 5 HOH A 30 430 80 HOH HOH . H 5 HOH A 31 431 29 HOH HOH . H 5 HOH A 32 432 70 HOH HOH . H 5 HOH A 33 433 81 HOH HOH . H 5 HOH A 34 434 15 HOH HOH . H 5 HOH A 35 435 41 HOH HOH . H 5 HOH A 36 436 132 HOH HOH . H 5 HOH A 37 437 6 HOH HOH . H 5 HOH A 38 438 2 HOH HOH . H 5 HOH A 39 439 126 HOH HOH . H 5 HOH A 40 440 49 HOH HOH . H 5 HOH A 41 441 4 HOH HOH . H 5 HOH A 42 442 57 HOH HOH . H 5 HOH A 43 443 32 HOH HOH . H 5 HOH A 44 444 5 HOH HOH . H 5 HOH A 45 445 79 HOH HOH . H 5 HOH A 46 446 17 HOH HOH . H 5 HOH A 47 447 65 HOH HOH . H 5 HOH A 48 448 34 HOH HOH . H 5 HOH A 49 449 19 HOH HOH . H 5 HOH A 50 450 55 HOH HOH . H 5 HOH A 51 451 69 HOH HOH . H 5 HOH A 52 452 50 HOH HOH . H 5 HOH A 53 453 67 HOH HOH . H 5 HOH A 54 454 20 HOH HOH . H 5 HOH A 55 455 30 HOH HOH . H 5 HOH A 56 456 59 HOH HOH . H 5 HOH A 57 457 52 HOH HOH . H 5 HOH A 58 458 78 HOH HOH . H 5 HOH A 59 459 40 HOH HOH . H 5 HOH A 60 460 89 HOH HOH . H 5 HOH A 61 461 86 HOH HOH . H 5 HOH A 62 462 85 HOH HOH . H 5 HOH A 63 463 10 HOH HOH . H 5 HOH A 64 464 9 HOH HOH . H 5 HOH A 65 465 3 HOH HOH . H 5 HOH A 66 466 95 HOH HOH . H 5 HOH A 67 467 44 HOH HOH . H 5 HOH A 68 468 139 HOH HOH . H 5 HOH A 69 469 87 HOH HOH . H 5 HOH A 70 470 119 HOH HOH . H 5 HOH A 71 471 33 HOH HOH . H 5 HOH A 72 472 134 HOH HOH . H 5 HOH A 73 473 90 HOH HOH . H 5 HOH A 74 474 144 HOH HOH . H 5 HOH A 75 475 94 HOH HOH . H 5 HOH A 76 476 56 HOH HOH . H 5 HOH A 77 477 93 HOH HOH . H 5 HOH A 78 478 76 HOH HOH . H 5 HOH A 79 479 8 HOH HOH . H 5 HOH A 80 480 25 HOH HOH . H 5 HOH A 81 481 12 HOH HOH . H 5 HOH A 82 482 51 HOH HOH . H 5 HOH A 83 483 66 HOH HOH . H 5 HOH A 84 484 39 HOH HOH . H 5 HOH A 85 485 107 HOH HOH . H 5 HOH A 86 486 45 HOH HOH . H 5 HOH A 87 487 106 HOH HOH . H 5 HOH A 88 488 71 HOH HOH . H 5 HOH A 89 489 13 HOH HOH . H 5 HOH A 90 490 16 HOH HOH . H 5 HOH A 91 491 75 HOH HOH . H 5 HOH A 92 492 92 HOH HOH . H 5 HOH A 93 493 26 HOH HOH . H 5 HOH A 94 494 72 HOH HOH . H 5 HOH A 95 495 83 HOH HOH . H 5 HOH A 96 496 21 HOH HOH . H 5 HOH A 97 497 115 HOH HOH . H 5 HOH A 98 498 43 HOH HOH . H 5 HOH A 99 499 142 HOH HOH . H 5 HOH A 100 500 102 HOH HOH . H 5 HOH A 101 501 35 HOH HOH . H 5 HOH A 102 502 103 HOH HOH . H 5 HOH A 103 503 23 HOH HOH . H 5 HOH A 104 504 82 HOH HOH . H 5 HOH A 105 505 24 HOH HOH . H 5 HOH A 106 506 77 HOH HOH . H 5 HOH A 107 507 97 HOH HOH . H 5 HOH A 108 508 14 HOH HOH . H 5 HOH A 109 509 27 HOH HOH . H 5 HOH A 110 510 46 HOH HOH . H 5 HOH A 111 511 73 HOH HOH . H 5 HOH A 112 512 84 HOH HOH . H 5 HOH A 113 513 96 HOH HOH . H 5 HOH A 114 514 68 HOH HOH . H 5 HOH A 115 515 60 HOH HOH . H 5 HOH A 116 516 104 HOH HOH . H 5 HOH A 117 517 58 HOH HOH . H 5 HOH A 118 518 38 HOH HOH . H 5 HOH A 119 519 141 HOH HOH . H 5 HOH A 120 520 117 HOH HOH . H 5 HOH A 121 521 47 HOH HOH . H 5 HOH A 122 522 105 HOH HOH . H 5 HOH A 123 523 88 HOH HOH . H 5 HOH A 124 524 74 HOH HOH . H 5 HOH A 125 525 109 HOH HOH . H 5 HOH A 126 526 99 HOH HOH . H 5 HOH A 127 527 108 HOH HOH . H 5 HOH A 128 528 111 HOH HOH . H 5 HOH A 129 529 133 HOH HOH . H 5 HOH A 130 530 114 HOH HOH . H 5 HOH A 131 531 145 HOH HOH . H 5 HOH A 132 532 112 HOH HOH . H 5 HOH A 133 533 137 HOH HOH . H 5 HOH A 134 534 128 HOH HOH . H 5 HOH A 135 535 143 HOH HOH . H 5 HOH A 136 536 118 HOH HOH . H 5 HOH A 137 537 113 HOH HOH . H 5 HOH A 138 538 110 HOH HOH . H 5 HOH A 139 539 101 HOH HOH . H 5 HOH A 140 540 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . F 4 2.484 -33.875 20.588 0.88 31.58 ? C PYR 305 A 1 HETATM 2 O O PYR . . . F 4 1.354 -33.51 20.034 0.88 22.79 ? O PYR 305 A 1 HETATM 3 O OXT PYR . . . F 4 2.442 -34.693 21.607 0.88 37.82 ? OXT PYR 305 A 1 HETATM 4 C CA PYR . . . F 4 3.691 -33.385 20.075 0.88 29.31 ? CA PYR 305 A 1 HETATM 5 O O3 PYR . . . F 4 3.654 -32.517 19.1 0.88 20.75 ? O3 PYR 305 A 1 HETATM 6 C CB PYR . . . F 4 5.025 -33.8 20.611 0.88 30.77 ? CB PYR 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #