data_6CJG # _model_server_result.job_id csKEDv1QQAUX-33a9KMgGA _model_server_result.datetime_utc '2024-11-24 21:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6CJG # _exptl.entry_id 6CJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CJG _cell.length_a 90.101 _cell.length_b 90.101 _cell.length_c 123.179 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 115 n n N1 C10 FMN doub 116 n n C2 O2 FMN doub 117 n n C2 N3 FMN sing 118 n n N3 C4 FMN sing 119 n n N3 HN3 FMN sing 120 n n C4 O4 FMN doub 121 n n C4 C4A FMN sing 122 n n C4A N5 FMN doub 123 n n C4A C10 FMN sing 124 n n N5 C5A FMN sing 125 n n C5A C6 FMN doub 126 n y C5A C9A FMN sing 127 n y C6 C7 FMN sing 128 n y C6 H6 FMN sing 129 n n C7 C7M FMN sing 130 n n C7 C8 FMN doub 131 n y C7M HM71 FMN sing 132 n n C7M HM72 FMN sing 133 n n C7M HM73 FMN sing 134 n n C8 C8M FMN sing 135 n n C8 C9 FMN sing 136 n y C8M HM81 FMN sing 137 n n C8M HM82 FMN sing 138 n n C8M HM83 FMN sing 139 n n C9 C9A FMN doub 140 n y C9 H9 FMN sing 141 n n C9A N10 FMN sing 142 n n N10 C10 FMN sing 143 n n N10 C1' FMN sing 144 n n C1' C2' FMN sing 145 n n C1' "H1'1" FMN sing 146 n n C1' "H1'2" FMN sing 147 n n C2' O2' FMN sing 148 n n C2' C3' FMN sing 149 n n C2' H2' FMN sing 150 n n O2' HO2' FMN sing 151 n n C3' O3' FMN sing 152 n n C3' C4' FMN sing 153 n n C3' H3' FMN sing 154 n n O3' HO3' FMN sing 155 n n C4' O4' FMN sing 156 n n C4' C5' FMN sing 157 n n C4' H4' FMN sing 158 n n O4' HO4' FMN sing 159 n n C5' O5' FMN sing 160 n n C5' "H5'1" FMN sing 161 n n C5' "H5'2" FMN sing 162 n n O5' P FMN sing 163 n n P O1P FMN doub 164 n n P O2P FMN sing 165 n n P O3P FMN sing 166 n n O2P HOP2 FMN sing 167 n n O3P HOP3 FMN sing 168 n n # _atom_sites.entry_id 6CJG _atom_sites.fract_transf_matrix[1][1] 0.011099 _atom_sites.fract_transf_matrix[1][2] 0.006408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 501 501 FMN FMN . C 3 ORO A 1 502 1 ORO ORO . D 4 F51 A 1 503 1 F51 296 . E 5 GOL A 1 504 1 GOL GOL . F 6 SO4 A 1 505 1 SO4 SO4 . G 7 ZWI A 1 506 1 ZWI ZWI . H 8 HOH A 1 601 38 HOH HOH . H 8 HOH A 2 602 51 HOH HOH . H 8 HOH A 3 603 2 HOH HOH . H 8 HOH A 4 604 12 HOH HOH . H 8 HOH A 5 605 5 HOH HOH . H 8 HOH A 6 606 19 HOH HOH . H 8 HOH A 7 607 29 HOH HOH . H 8 HOH A 8 608 111 HOH HOH . H 8 HOH A 9 609 8 HOH HOH . H 8 HOH A 10 610 1 HOH HOH . H 8 HOH A 11 611 41 HOH HOH . H 8 HOH A 12 612 20 HOH HOH . H 8 HOH A 13 613 59 HOH HOH . H 8 HOH A 14 614 6 HOH HOH . H 8 HOH A 15 615 15 HOH HOH . H 8 HOH A 16 616 107 HOH HOH . H 8 HOH A 17 617 127 HOH HOH . H 8 HOH A 18 618 3 HOH HOH . H 8 HOH A 19 619 7 HOH HOH . H 8 HOH A 20 620 49 HOH HOH . H 8 HOH A 21 621 11 HOH HOH . H 8 HOH A 22 622 60 HOH HOH . H 8 HOH A 23 623 9 HOH HOH . H 8 HOH A 24 624 4 HOH HOH . H 8 HOH A 25 625 17 HOH HOH . H 8 HOH A 26 626 10 HOH HOH . H 8 HOH A 27 627 86 HOH HOH . H 8 HOH A 28 628 40 HOH HOH . H 8 HOH A 29 629 131 HOH HOH . H 8 HOH A 30 630 24 HOH HOH . H 8 HOH A 31 631 18 HOH HOH . H 8 HOH A 32 632 52 HOH HOH . H 8 HOH A 33 633 23 HOH HOH . H 8 HOH A 34 634 39 HOH HOH . H 8 HOH A 35 635 75 HOH HOH . H 8 HOH A 36 636 128 HOH HOH . H 8 HOH A 37 637 125 HOH HOH . H 8 HOH A 38 638 67 HOH HOH . H 8 HOH A 39 639 55 HOH HOH . H 8 HOH A 40 640 122 HOH HOH . H 8 HOH A 41 641 76 HOH HOH . H 8 HOH A 42 642 109 HOH HOH . H 8 HOH A 43 643 62 HOH HOH . H 8 HOH A 44 644 108 HOH HOH . H 8 HOH A 45 645 88 HOH HOH . H 8 HOH A 46 646 36 HOH HOH . H 8 HOH A 47 647 14 HOH HOH . H 8 HOH A 48 648 84 HOH HOH . H 8 HOH A 49 649 68 HOH HOH . H 8 HOH A 50 650 45 HOH HOH . H 8 HOH A 51 651 129 HOH HOH . H 8 HOH A 52 652 133 HOH HOH . H 8 HOH A 53 653 123 HOH HOH . H 8 HOH A 54 654 87 HOH HOH . H 8 HOH A 55 655 78 HOH HOH . H 8 HOH A 56 656 102 HOH HOH . H 8 HOH A 57 657 57 HOH HOH . H 8 HOH A 58 658 126 HOH HOH . H 8 HOH A 59 659 137 HOH HOH . H 8 HOH A 60 660 35 HOH HOH . H 8 HOH A 61 661 138 HOH HOH . H 8 HOH A 62 662 93 HOH HOH . H 8 HOH A 63 663 117 HOH HOH . H 8 HOH A 64 664 83 HOH HOH . H 8 HOH A 65 665 141 HOH HOH . H 8 HOH A 66 666 96 HOH HOH . H 8 HOH A 67 667 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.269 41.874 8.746 1 39.02 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . B 2 2.904 42.554 9.887 1 42.21 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . B 2 3.532 42.409 10.947 1 44.74 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . B 2 1.834 43.415 9.837 1 41.56 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . B 2 1.125 43.597 8.666 1 41.86 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . B 2 0.167 44.377 8.667 1 43.16 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . B 2 1.495 42.904 7.513 1 36.97 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . B 2 0.801 43.06 6.322 1 38.23 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . B 2 1.184 42.353 5.197 1 37.38 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . B 2 0.494 42.502 3.998 1 31.22 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . B 2 0.882 41.781 2.87 1 31.04 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . B 2 0.13 41.939 1.575 1 28.28 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . B 2 1.972 40.911 2.947 1 31.35 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . B 2 2.402 40.12 1.75 1 24.73 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . B 2 2.665 40.766 4.14 1 30.37 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . B 2 2.271 41.483 5.266 1 35.48 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . B 2 2.949 41.328 6.459 1 36.01 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . B 2 2.575 42.043 7.572 1 35.38 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . B 2 4.132 40.409 6.544 1 39.07 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . B 2 3.772 38.96 6.837 1 34.35 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . B 2 3.298 38.869 8.157 1 36.14 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . B 2 5.021 38.103 6.709 1 37.66 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . B 2 5.916 38.478 7.739 1 38.2 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . B 2 5.705 38.273 5.348 1 38.16 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . B 2 4.759 38.35 4.291 1 30.93 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . B 2 6.669 37.113 5.095 1 34.94 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . B 2 5.88 35.952 5.04 1 33.4 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . B 2 5.502 35.184 3.666 1 36.45 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . B 2 5.19 33.755 4.074 1 32.03 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . B 2 6.645 35.183 2.672 1 30.82 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . B 2 4.288 35.862 3.055 1 31.19 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #