data_6CJJ # _model_server_result.job_id hjn7irbHGOy2t5Yi7jt9EQ _model_server_result.datetime_utc '2024-11-16 07:00:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6CJJ # _exptl.entry_id 6CJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CJJ _cell.length_a 74.088 _cell.length_b 74.088 _cell.length_c 107.873 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 40 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 A OD1 ASP 157 A ASP 145 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc3 B MG MG . A MG 301 1_555 D O3B ADP . A ADP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 B MG MG . A MG 301 1_555 D O1A ADP . A ADP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 B MG MG . A MG 301 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc8 C MG MG . A MG 302 1_555 H O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 114 n n C1 C2 EDO sing 115 n n C1 H11 EDO sing 116 n n C1 H12 EDO sing 117 n n O1 HO1 EDO sing 118 n n C2 O2 EDO sing 119 n n C2 H21 EDO sing 120 n n C2 H22 EDO sing 121 n n O2 HO2 EDO sing 122 n n # _atom_sites.entry_id 6CJJ _atom_sites.fract_transf_matrix[1][1] 0.013497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 2 MG A 1 302 2 MG MG . D 3 ADP A 1 303 1 ADP ADP . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 2 EDO EDO . G 4 EDO A 1 306 3 EDO EDO . H 5 HOH A 1 401 198 HOH HOH . H 5 HOH A 2 402 91 HOH HOH . H 5 HOH A 3 403 208 HOH HOH . H 5 HOH A 4 404 92 HOH HOH . H 5 HOH A 5 405 162 HOH HOH . H 5 HOH A 6 406 156 HOH HOH . H 5 HOH A 7 407 139 HOH HOH . H 5 HOH A 8 408 88 HOH HOH . H 5 HOH A 9 409 180 HOH HOH . H 5 HOH A 10 410 154 HOH HOH . H 5 HOH A 11 411 115 HOH HOH . H 5 HOH A 12 412 121 HOH HOH . H 5 HOH A 13 413 87 HOH HOH . H 5 HOH A 14 414 184 HOH HOH . H 5 HOH A 15 415 135 HOH HOH . H 5 HOH A 16 416 7 HOH HOH . H 5 HOH A 17 417 215 HOH HOH . H 5 HOH A 18 418 56 HOH HOH . H 5 HOH A 19 419 163 HOH HOH . H 5 HOH A 20 420 164 HOH HOH . H 5 HOH A 21 421 97 HOH HOH . H 5 HOH A 22 422 57 HOH HOH . H 5 HOH A 23 423 159 HOH HOH . H 5 HOH A 24 424 166 HOH HOH . H 5 HOH A 25 425 83 HOH HOH . H 5 HOH A 26 426 188 HOH HOH . H 5 HOH A 27 427 161 HOH HOH . H 5 HOH A 28 428 219 HOH HOH . H 5 HOH A 29 429 119 HOH HOH . H 5 HOH A 30 430 105 HOH HOH . H 5 HOH A 31 431 14 HOH HOH . H 5 HOH A 32 432 73 HOH HOH . H 5 HOH A 33 433 80 HOH HOH . H 5 HOH A 34 434 114 HOH HOH . H 5 HOH A 35 435 30 HOH HOH . H 5 HOH A 36 436 42 HOH HOH . H 5 HOH A 37 437 96 HOH HOH . H 5 HOH A 38 438 35 HOH HOH . H 5 HOH A 39 439 12 HOH HOH . H 5 HOH A 40 440 100 HOH HOH . H 5 HOH A 41 441 95 HOH HOH . H 5 HOH A 42 442 75 HOH HOH . H 5 HOH A 43 443 81 HOH HOH . H 5 HOH A 44 444 70 HOH HOH . H 5 HOH A 45 445 58 HOH HOH . H 5 HOH A 46 446 89 HOH HOH . H 5 HOH A 47 447 160 HOH HOH . H 5 HOH A 48 448 74 HOH HOH . H 5 HOH A 49 449 8 HOH HOH . H 5 HOH A 50 450 218 HOH HOH . H 5 HOH A 51 451 185 HOH HOH . H 5 HOH A 52 452 2 HOH HOH . H 5 HOH A 53 453 202 HOH HOH . H 5 HOH A 54 454 71 HOH HOH . H 5 HOH A 55 455 11 HOH HOH . H 5 HOH A 56 456 194 HOH HOH . H 5 HOH A 57 457 131 HOH HOH . H 5 HOH A 58 458 13 HOH HOH . H 5 HOH A 59 459 167 HOH HOH . H 5 HOH A 60 460 39 HOH HOH . H 5 HOH A 61 461 183 HOH HOH . H 5 HOH A 62 462 17 HOH HOH . H 5 HOH A 63 463 25 HOH HOH . H 5 HOH A 64 464 196 HOH HOH . H 5 HOH A 65 465 55 HOH HOH . H 5 HOH A 66 466 48 HOH HOH . H 5 HOH A 67 467 6 HOH HOH . H 5 HOH A 68 468 18 HOH HOH . H 5 HOH A 69 469 177 HOH HOH . H 5 HOH A 70 470 103 HOH HOH . H 5 HOH A 71 471 132 HOH HOH . H 5 HOH A 72 472 72 HOH HOH . H 5 HOH A 73 473 192 HOH HOH . H 5 HOH A 74 474 93 HOH HOH . H 5 HOH A 75 475 1 HOH HOH . H 5 HOH A 76 476 36 HOH HOH . H 5 HOH A 77 477 172 HOH HOH . H 5 HOH A 78 478 189 HOH HOH . H 5 HOH A 79 479 157 HOH HOH . H 5 HOH A 80 480 216 HOH HOH . H 5 HOH A 81 481 62 HOH HOH . H 5 HOH A 82 482 41 HOH HOH . H 5 HOH A 83 483 211 HOH HOH . H 5 HOH A 84 484 3 HOH HOH . H 5 HOH A 85 485 31 HOH HOH . H 5 HOH A 86 486 51 HOH HOH . H 5 HOH A 87 487 85 HOH HOH . H 5 HOH A 88 488 67 HOH HOH . H 5 HOH A 89 489 59 HOH HOH . H 5 HOH A 90 490 170 HOH HOH . H 5 HOH A 91 491 66 HOH HOH . H 5 HOH A 92 492 50 HOH HOH . H 5 HOH A 93 493 20 HOH HOH . H 5 HOH A 94 494 141 HOH HOH . H 5 HOH A 95 495 46 HOH HOH . H 5 HOH A 96 496 181 HOH HOH . H 5 HOH A 97 497 134 HOH HOH . H 5 HOH A 98 498 169 HOH HOH . H 5 HOH A 99 499 112 HOH HOH . H 5 HOH A 100 500 53 HOH HOH . H 5 HOH A 101 501 28 HOH HOH . H 5 HOH A 102 502 9 HOH HOH . H 5 HOH A 103 503 104 HOH HOH . H 5 HOH A 104 504 174 HOH HOH . H 5 HOH A 105 505 107 HOH HOH . H 5 HOH A 106 506 10 HOH HOH . H 5 HOH A 107 507 29 HOH HOH . H 5 HOH A 108 508 173 HOH HOH . H 5 HOH A 109 509 116 HOH HOH . H 5 HOH A 110 510 138 HOH HOH . H 5 HOH A 111 511 125 HOH HOH . H 5 HOH A 112 512 78 HOH HOH . H 5 HOH A 113 513 102 HOH HOH . H 5 HOH A 114 514 65 HOH HOH . H 5 HOH A 115 515 4 HOH HOH . H 5 HOH A 116 516 38 HOH HOH . H 5 HOH A 117 517 82 HOH HOH . H 5 HOH A 118 518 124 HOH HOH . H 5 HOH A 119 519 16 HOH HOH . H 5 HOH A 120 520 98 HOH HOH . H 5 HOH A 121 521 40 HOH HOH . H 5 HOH A 122 522 130 HOH HOH . H 5 HOH A 123 523 60 HOH HOH . H 5 HOH A 124 524 175 HOH HOH . H 5 HOH A 125 525 69 HOH HOH . H 5 HOH A 126 526 34 HOH HOH . H 5 HOH A 127 527 68 HOH HOH . H 5 HOH A 128 528 64 HOH HOH . H 5 HOH A 129 529 155 HOH HOH . H 5 HOH A 130 530 77 HOH HOH . H 5 HOH A 131 531 150 HOH HOH . H 5 HOH A 132 532 22 HOH HOH . H 5 HOH A 133 533 123 HOH HOH . H 5 HOH A 134 534 149 HOH HOH . H 5 HOH A 135 535 52 HOH HOH . H 5 HOH A 136 536 5 HOH HOH . H 5 HOH A 137 537 21 HOH HOH . H 5 HOH A 138 538 26 HOH HOH . H 5 HOH A 139 539 128 HOH HOH . H 5 HOH A 140 540 213 HOH HOH . H 5 HOH A 141 541 151 HOH HOH . H 5 HOH A 142 542 33 HOH HOH . H 5 HOH A 143 543 84 HOH HOH . H 5 HOH A 144 544 191 HOH HOH . H 5 HOH A 145 545 44 HOH HOH . H 5 HOH A 146 546 193 HOH HOH . H 5 HOH A 147 547 37 HOH HOH . H 5 HOH A 148 548 120 HOH HOH . H 5 HOH A 149 549 145 HOH HOH . H 5 HOH A 150 550 190 HOH HOH . H 5 HOH A 151 551 142 HOH HOH . H 5 HOH A 152 552 137 HOH HOH . H 5 HOH A 153 553 19 HOH HOH . H 5 HOH A 154 554 54 HOH HOH . H 5 HOH A 155 555 23 HOH HOH . H 5 HOH A 156 556 32 HOH HOH . H 5 HOH A 157 557 43 HOH HOH . H 5 HOH A 158 558 129 HOH HOH . H 5 HOH A 159 559 61 HOH HOH . H 5 HOH A 160 560 111 HOH HOH . H 5 HOH A 161 561 118 HOH HOH . H 5 HOH A 162 562 49 HOH HOH . H 5 HOH A 163 563 171 HOH HOH . H 5 HOH A 164 564 24 HOH HOH . H 5 HOH A 165 565 108 HOH HOH . H 5 HOH A 166 566 27 HOH HOH . H 5 HOH A 167 567 187 HOH HOH . H 5 HOH A 168 568 15 HOH HOH . H 5 HOH A 169 569 101 HOH HOH . H 5 HOH A 170 570 113 HOH HOH . H 5 HOH A 171 571 79 HOH HOH . H 5 HOH A 172 572 153 HOH HOH . H 5 HOH A 173 573 117 HOH HOH . H 5 HOH A 174 574 158 HOH HOH . H 5 HOH A 175 575 94 HOH HOH . H 5 HOH A 176 576 76 HOH HOH . H 5 HOH A 177 577 197 HOH HOH . H 5 HOH A 178 578 63 HOH HOH . H 5 HOH A 179 579 45 HOH HOH . H 5 HOH A 180 580 207 HOH HOH . H 5 HOH A 181 581 47 HOH HOH . H 5 HOH A 182 582 178 HOH HOH . H 5 HOH A 183 583 206 HOH HOH . H 5 HOH A 184 584 210 HOH HOH . H 5 HOH A 185 585 199 HOH HOH . H 5 HOH A 186 586 90 HOH HOH . H 5 HOH A 187 587 140 HOH HOH . H 5 HOH A 188 588 148 HOH HOH . H 5 HOH A 189 589 201 HOH HOH . H 5 HOH A 190 590 203 HOH HOH . H 5 HOH A 191 591 86 HOH HOH . H 5 HOH A 192 592 214 HOH HOH . H 5 HOH A 193 593 122 HOH HOH . H 5 HOH A 194 594 106 HOH HOH . H 5 HOH A 195 595 168 HOH HOH . H 5 HOH A 196 596 179 HOH HOH . H 5 HOH A 197 597 200 HOH HOH . H 5 HOH A 198 598 143 HOH HOH . H 5 HOH A 199 599 146 HOH HOH . H 5 HOH A 200 600 217 HOH HOH . H 5 HOH A 201 601 127 HOH HOH . H 5 HOH A 202 602 144 HOH HOH . H 5 HOH A 203 603 126 HOH HOH . H 5 HOH A 204 604 133 HOH HOH . H 5 HOH A 205 605 182 HOH HOH . H 5 HOH A 206 606 176 HOH HOH . H 5 HOH A 207 607 99 HOH HOH . H 5 HOH A 208 608 136 HOH HOH . H 5 HOH A 209 609 212 HOH HOH . H 5 HOH A 210 610 205 HOH HOH . H 5 HOH A 211 611 195 HOH HOH . H 5 HOH A 212 612 209 HOH HOH . H 5 HOH A 213 613 204 HOH HOH . H 5 HOH A 214 614 165 HOH HOH . H 5 HOH A 215 615 186 HOH HOH . H 5 HOH A 216 616 147 HOH HOH . H 5 HOH A 217 617 110 HOH HOH . H 5 HOH A 218 618 109 HOH HOH . H 5 HOH A 219 619 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 89.677 60.146 102.323 1 39.78 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 90.343 61.181 101.579 1 49.76 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 89.152 59.107 101.347 1 38.75 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 90.237 58.466 100.656 1 35.97 ? O2 EDO 304 A 1 HETATM 5 H H11 EDO . . . E 4 90.376 59.682 103.021 1 47.74 ? H11 EDO 304 A 1 HETATM 6 H H12 EDO . . . E 4 88.85 60.572 102.895 1 47.74 ? H12 EDO 304 A 1 HETATM 7 H HO1 EDO . . . E 4 90.682 61.849 102.19 1 59.71 ? HO1 EDO 304 A 1 HETATM 8 H H21 EDO . . . E 4 88.49 59.587 100.623 1 46.5 ? H21 EDO 304 A 1 HETATM 9 H H22 EDO . . . E 4 88.571 58.358 101.89 1 46.5 ? H22 EDO 304 A 1 HETATM 10 H HO2 EDO . . . E 4 89.885 57.809 100.041 1 43.17 ? HO2 EDO 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #