data_6CJT # _model_server_result.job_id hQAT_oq7X1rm0-1HLdEyUQ _model_server_result.datetime_utc '2024-11-04 22:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":500}' # _entry.id 6CJT # _exptl.entry_id 6CJT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CJT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 S N N ? 2 AA N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 235 n n PA O2A PCG doub 236 n n PA O5' PCG sing 237 n n PA O3' PCG sing 238 n n O1A HO1A PCG sing 239 n n O5' C5' PCG sing 240 n n C5' C4' PCG sing 241 n n C5' "H5'1" PCG sing 242 n n C5' "H5'2" PCG sing 243 n n C4' O4' PCG sing 244 n n C4' C3' PCG sing 245 n n C4' H4' PCG sing 246 n n O4' C1' PCG sing 247 n n C3' O3' PCG sing 248 n n C3' C2' PCG sing 249 n n C3' H3' PCG sing 250 n n C2' O2' PCG sing 251 n n C2' C1' PCG sing 252 n n C2' H2' PCG sing 253 n n O2' HO2' PCG sing 254 n n C1' N9 PCG sing 255 n n C1' H1' PCG sing 256 n n N9 C8 PCG sing 257 n y N9 C4 PCG sing 258 n y C8 N7 PCG doub 259 n y C8 H8 PCG sing 260 n n N7 C5 PCG sing 261 n y C5 C6 PCG sing 262 n n C5 C4 PCG doub 263 n y C6 O6 PCG doub 264 n n C6 N1 PCG sing 265 n n N1 C2 PCG sing 266 n n N1 HN1 PCG sing 267 n n C2 N2 PCG sing 268 n n C2 N3 PCG doub 269 n n N2 HN21 PCG sing 270 n n N2 HN22 PCG sing 271 n n N3 C4 PCG sing 272 n n # _atom_sites.entry_id 6CJT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PCG A 1 500 500 PCG PCG . F 3 PGW A 1 502 502 PGW PGW . G 3 PGW A 1 503 503 PGW PGW . H 3 PGW A 1 504 504 PGW PGW . I 3 PGW A 1 505 505 PGW PGW . J 3 PGW A 1 506 506 PGW PGW . K 3 PGW A 1 501 501 PGW PGW . L 2 PCG B 1 500 500 PCG PCG . M 3 PGW B 1 502 502 PGW PGW . N 3 PGW B 1 503 503 PGW PGW . O 3 PGW B 1 504 504 PGW PGW . P 3 PGW B 1 505 505 PGW PGW . Q 3 PGW B 1 506 506 PGW PGW . R 3 PGW B 1 501 501 PGW PGW . S 2 PCG C 1 500 500 PCG PCG . T 3 PGW C 1 502 502 PGW PGW . U 3 PGW C 1 503 503 PGW PGW . V 3 PGW C 1 504 504 PGW PGW . W 3 PGW C 1 505 505 PGW PGW . X 3 PGW C 1 506 506 PGW PGW . Y 3 PGW C 1 501 501 PGW PGW . Z 3 PGW D 1 501 501 PGW PGW . AA 2 PCG D 1 500 500 PCG PCG . BA 3 PGW D 1 502 502 PGW PGW . CA 3 PGW D 1 503 503 PGW PGW . DA 3 PGW D 1 504 504 PGW PGW . EA 3 PGW D 1 505 505 PGW PGW . FA 3 PGW D 1 506 506 PGW PGW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . AA 2 134.348 169.841 179.709 1 99.18 ? PA PCG 500 D 1 HETATM 2 O O1A PCG . . . AA 2 134.12 169.487 181.104 1 99.18 ? O1A PCG 500 D 1 HETATM 3 O O2A PCG . . . AA 2 134.53 168.587 178.758 1 99.18 ? O2A PCG 500 D 1 HETATM 4 O O5' PCG . . . AA 2 133.131 170.746 179.177 1 99.18 ? O5' PCG 500 D 1 HETATM 5 C C5' PCG . . . AA 2 133.26 171.019 177.797 1 99.18 ? C5' PCG 500 D 1 HETATM 6 C C4' PCG . . . AA 2 134.697 171.497 177.594 1 99.18 ? C4' PCG 500 D 1 HETATM 7 O O4' PCG . . . AA 2 134.747 172.686 176.839 1 99.18 ? O4' PCG 500 D 1 HETATM 8 C C3' PCG . . . AA 2 135.291 171.95 178.947 1 99.18 ? C3' PCG 500 D 1 HETATM 9 O O3' PCG . . . AA 2 135.64 170.77 179.624 1 99.18 ? O3' PCG 500 D 1 HETATM 10 C C2' PCG . . . AA 2 136.44 172.821 178.529 1 99.18 ? C2' PCG 500 D 1 HETATM 11 O O2' PCG . . . AA 2 137.618 172.043 178.496 1 99.18 ? O2' PCG 500 D 1 HETATM 12 C C1' PCG . . . AA 2 136.057 173.154 177.072 1 99.18 ? C1' PCG 500 D 1 HETATM 13 N N9 PCG . . . AA 2 135.923 174.635 176.934 1 99.18 ? N9 PCG 500 D 1 HETATM 14 C C8 PCG . . . AA 2 136.512 175.447 176.02 1 99.18 ? C8 PCG 500 D 1 HETATM 15 N N7 PCG . . . AA 2 136.184 176.684 176.157 1 99.18 ? N7 PCG 500 D 1 HETATM 16 C C5 PCG . . . AA 2 135.322 176.705 177.212 1 99.18 ? C5 PCG 500 D 1 HETATM 17 C C6 PCG . . . AA 2 134.66 177.776 177.793 1 99.18 ? C6 PCG 500 D 1 HETATM 18 O O6 PCG . . . AA 2 134.738 178.948 177.44 1 99.18 ? O6 PCG 500 D 1 HETATM 19 N N1 PCG . . . AA 2 133.845 177.462 178.863 1 99.18 ? N1 PCG 500 D 1 HETATM 20 C C2 PCG . . . AA 2 133.714 176.17 179.309 1 99.18 ? C2 PCG 500 D 1 HETATM 21 N N2 PCG . . . AA 2 132.893 175.924 180.371 1 99.18 ? N2 PCG 500 D 1 HETATM 22 N N3 PCG . . . AA 2 134.323 175.082 178.792 1 99.18 ? N3 PCG 500 D 1 HETATM 23 C C4 PCG . . . AA 2 135.125 175.371 177.746 1 99.18 ? C4 PCG 500 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #