data_6CKW # _model_server_result.job_id YnXXGFWdl8FIXGh0e_Wutw _model_server_result.datetime_utc '2024-11-28 05:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ckw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 6CKW # _exptl.entry_id 6CKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CKW _cell.length_a 134.33 _cell.length_b 134.33 _cell.length_c 134.33 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA 24-meric 24 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1,6,12 A,C,D,E,F,G,H,I,S 2 1,2,3,4,5,6,7,8,9,10,11,12 B,J,K,L,M,N,O,P,Q,R,T 2 13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_454 x-1/2,y+1/2,z-1/2 1 0 0 0 1 0 0 0 1 -67.165 67.165 -67.165 14 'crystal symmetry operation' 14_544 -x+1/2,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 67.165 -67.165 -67.165 15 'crystal symmetry operation' 15_555 -x+1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 67.165 67.165 67.165 16 'crystal symmetry operation' 16_445 x-1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -67.165 -67.165 67.165 17 'crystal symmetry operation' 17_445 z-1/2,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 -67.165 -67.165 67.165 18 'crystal symmetry operation' 18_454 z-1/2,-x+1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 -67.165 67.165 -67.165 19 'crystal symmetry operation' 19_555 -z+1/2,-x+1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 67.165 67.165 67.165 20 'crystal symmetry operation' 20_544 -z+1/2,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 67.165 -67.165 -67.165 21 'crystal symmetry operation' 21_544 y+1/2,z-1/2,x-1/2 0 1 0 0 0 1 1 0 0 67.165 -67.165 -67.165 22 'crystal symmetry operation' 22_445 -y-1/2,z-1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 -67.165 -67.165 67.165 23 'crystal symmetry operation' 23_555 y+1/2,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 67.165 67.165 67.165 24 'crystal symmetry operation' 24_454 -y-1/2,-z+1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 -67.165 67.165 -67.165 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 O N N ? 4 Q N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 70 n n S C1 DMS sing 71 n n S C2 DMS sing 72 n n C1 H11 DMS sing 73 n n C1 H12 DMS sing 74 n n C1 H13 DMS sing 75 n n C2 H21 DMS sing 76 n n C2 H22 DMS sing 77 n n C2 H23 DMS sing 78 n n # _atom_sites.entry_id 6CKW _atom_sites.fract_transf_matrix[1][1] 0.007444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6D A 1 201 1 F6D LI1 . D 3 SO4 A 1 202 1 SO4 SO4 . E 3 SO4 A 1 203 2 SO4 SO4 . F 3 SO4 A 1 204 5 SO4 SO4 . G 4 DMS A 1 205 8 DMS DMS . H 4 DMS A 1 206 10 DMS DMS . I 3 SO4 A 1 207 11 SO4 SO4 . J 2 F6D B 1 201 1 F6D LI1 . K 3 SO4 B 1 202 3 SO4 SO4 . L 3 SO4 B 1 203 4 SO4 SO4 . M 3 SO4 B 1 204 6 SO4 SO4 . N 3 SO4 B 1 205 7 SO4 SO4 . O 4 DMS B 1 206 9 DMS DMS . P 3 SO4 B 1 207 12 SO4 SO4 . Q 4 DMS B 1 208 13 DMS DMS . R 5 PG4 B 1 209 14 PG4 PG4 . S 6 HOH A 1 301 171 HOH HOH . S 6 HOH A 2 302 172 HOH HOH . S 6 HOH A 3 303 157 HOH HOH . S 6 HOH A 4 304 43 HOH HOH . S 6 HOH A 5 305 23 HOH HOH . S 6 HOH A 6 306 56 HOH HOH . S 6 HOH A 7 307 18 HOH HOH . S 6 HOH A 8 308 149 HOH HOH . S 6 HOH A 9 309 75 HOH HOH . S 6 HOH A 10 310 122 HOH HOH . S 6 HOH A 11 311 89 HOH HOH . S 6 HOH A 12 312 6 HOH HOH . S 6 HOH A 13 313 64 HOH HOH . S 6 HOH A 14 314 201 HOH HOH . S 6 HOH A 15 315 42 HOH HOH . S 6 HOH A 16 316 63 HOH HOH . S 6 HOH A 17 317 85 HOH HOH . S 6 HOH A 18 318 182 HOH HOH . S 6 HOH A 19 319 51 HOH HOH . S 6 HOH A 20 320 158 HOH HOH . S 6 HOH A 21 321 34 HOH HOH . S 6 HOH A 22 322 133 HOH HOH . S 6 HOH A 23 323 140 HOH HOH . S 6 HOH A 24 324 114 HOH HOH . S 6 HOH A 25 325 131 HOH HOH . S 6 HOH A 26 326 7 HOH HOH . S 6 HOH A 27 327 61 HOH HOH . S 6 HOH A 28 328 33 HOH HOH . S 6 HOH A 29 329 100 HOH HOH . S 6 HOH A 30 330 9 HOH HOH . S 6 HOH A 31 331 80 HOH HOH . S 6 HOH A 32 332 50 HOH HOH . S 6 HOH A 33 333 94 HOH HOH . S 6 HOH A 34 334 46 HOH HOH . S 6 HOH A 35 335 113 HOH HOH . S 6 HOH A 36 336 231 HOH HOH . S 6 HOH A 37 337 2 HOH HOH . S 6 HOH A 38 338 8 HOH HOH . S 6 HOH A 39 339 29 HOH HOH . S 6 HOH A 40 340 57 HOH HOH . S 6 HOH A 41 341 96 HOH HOH . S 6 HOH A 42 342 230 HOH HOH . S 6 HOH A 43 343 145 HOH HOH . S 6 HOH A 44 344 128 HOH HOH . S 6 HOH A 45 345 16 HOH HOH . S 6 HOH A 46 346 11 HOH HOH . S 6 HOH A 47 347 217 HOH HOH . S 6 HOH A 48 348 17 HOH HOH . S 6 HOH A 49 349 190 HOH HOH . S 6 HOH A 50 350 200 HOH HOH . S 6 HOH A 51 351 36 HOH HOH . S 6 HOH A 52 352 67 HOH HOH . S 6 HOH A 53 353 22 HOH HOH . S 6 HOH A 54 354 69 HOH HOH . S 6 HOH A 55 355 156 HOH HOH . S 6 HOH A 56 356 40 HOH HOH . S 6 HOH A 57 357 86 HOH HOH . S 6 HOH A 58 358 123 HOH HOH . S 6 HOH A 59 359 72 HOH HOH . S 6 HOH A 60 360 135 HOH HOH . S 6 HOH A 61 361 116 HOH HOH . S 6 HOH A 62 362 146 HOH HOH . S 6 HOH A 63 363 71 HOH HOH . S 6 HOH A 64 364 66 HOH HOH . S 6 HOH A 65 365 180 HOH HOH . S 6 HOH A 66 366 41 HOH HOH . S 6 HOH A 67 367 48 HOH HOH . S 6 HOH A 68 368 91 HOH HOH . S 6 HOH A 69 369 65 HOH HOH . S 6 HOH A 70 370 163 HOH HOH . S 6 HOH A 71 371 169 HOH HOH . S 6 HOH A 72 372 150 HOH HOH . S 6 HOH A 73 373 14 HOH HOH . S 6 HOH A 74 374 120 HOH HOH . S 6 HOH A 75 375 229 HOH HOH . S 6 HOH A 76 376 59 HOH HOH . S 6 HOH A 77 377 84 HOH HOH . S 6 HOH A 78 378 31 HOH HOH . S 6 HOH A 79 379 1 HOH HOH . S 6 HOH A 80 380 53 HOH HOH . S 6 HOH A 81 381 205 HOH HOH . S 6 HOH A 82 382 47 HOH HOH . S 6 HOH A 83 383 52 HOH HOH . S 6 HOH A 84 384 130 HOH HOH . S 6 HOH A 85 385 211 HOH HOH . S 6 HOH A 86 386 162 HOH HOH . S 6 HOH A 87 387 106 HOH HOH . S 6 HOH A 88 388 147 HOH HOH . S 6 HOH A 89 389 30 HOH HOH . S 6 HOH A 90 390 186 HOH HOH . S 6 HOH A 91 391 38 HOH HOH . S 6 HOH A 92 392 203 HOH HOH . S 6 HOH A 93 393 199 HOH HOH . S 6 HOH A 94 394 125 HOH HOH . S 6 HOH A 95 395 185 HOH HOH . S 6 HOH A 96 396 202 HOH HOH . S 6 HOH A 97 397 55 HOH HOH . S 6 HOH A 98 398 124 HOH HOH . S 6 HOH A 99 399 216 HOH HOH . S 6 HOH A 100 400 206 HOH HOH . S 6 HOH A 101 401 155 HOH HOH . S 6 HOH A 102 402 207 HOH HOH . S 6 HOH A 103 403 194 HOH HOH . S 6 HOH A 104 404 191 HOH HOH . S 6 HOH A 105 405 160 HOH HOH . S 6 HOH A 106 406 12 HOH HOH . S 6 HOH A 107 407 118 HOH HOH . S 6 HOH A 108 408 141 HOH HOH . S 6 HOH A 109 409 132 HOH HOH . S 6 HOH A 110 410 214 HOH HOH . S 6 HOH A 111 411 142 HOH HOH . S 6 HOH A 112 412 196 HOH HOH . T 6 HOH B 1 301 24 HOH HOH . T 6 HOH B 2 302 87 HOH HOH . T 6 HOH B 3 303 179 HOH HOH . T 6 HOH B 4 304 19 HOH HOH . T 6 HOH B 5 305 26 HOH HOH . T 6 HOH B 6 306 98 HOH HOH . T 6 HOH B 7 307 60 HOH HOH . T 6 HOH B 8 308 105 HOH HOH . T 6 HOH B 9 309 183 HOH HOH . T 6 HOH B 10 310 82 HOH HOH . T 6 HOH B 11 311 79 HOH HOH . T 6 HOH B 12 312 15 HOH HOH . T 6 HOH B 13 313 70 HOH HOH . T 6 HOH B 14 314 168 HOH HOH . T 6 HOH B 15 315 49 HOH HOH . T 6 HOH B 16 316 198 HOH HOH . T 6 HOH B 17 317 81 HOH HOH . T 6 HOH B 18 318 90 HOH HOH . T 6 HOH B 19 319 184 HOH HOH . T 6 HOH B 20 320 220 HOH HOH . T 6 HOH B 21 321 27 HOH HOH . T 6 HOH B 22 322 178 HOH HOH . T 6 HOH B 23 323 173 HOH HOH . T 6 HOH B 24 324 174 HOH HOH . T 6 HOH B 25 325 93 HOH HOH . T 6 HOH B 26 326 215 HOH HOH . T 6 HOH B 27 327 136 HOH HOH . T 6 HOH B 28 328 143 HOH HOH . T 6 HOH B 29 329 104 HOH HOH . T 6 HOH B 30 330 44 HOH HOH . T 6 HOH B 31 331 175 HOH HOH . T 6 HOH B 32 332 28 HOH HOH . T 6 HOH B 33 333 225 HOH HOH . T 6 HOH B 34 334 25 HOH HOH . T 6 HOH B 35 335 95 HOH HOH . T 6 HOH B 36 336 35 HOH HOH . T 6 HOH B 37 337 32 HOH HOH . T 6 HOH B 38 338 39 HOH HOH . T 6 HOH B 39 339 204 HOH HOH . T 6 HOH B 40 340 119 HOH HOH . T 6 HOH B 41 341 54 HOH HOH . T 6 HOH B 42 342 103 HOH HOH . T 6 HOH B 43 343 78 HOH HOH . T 6 HOH B 44 344 88 HOH HOH . T 6 HOH B 45 345 233 HOH HOH . T 6 HOH B 46 346 151 HOH HOH . T 6 HOH B 47 347 10 HOH HOH . T 6 HOH B 48 348 20 HOH HOH . T 6 HOH B 49 349 45 HOH HOH . T 6 HOH B 50 350 37 HOH HOH . T 6 HOH B 51 351 188 HOH HOH . T 6 HOH B 52 352 192 HOH HOH . T 6 HOH B 53 353 68 HOH HOH . T 6 HOH B 54 354 121 HOH HOH . T 6 HOH B 55 355 58 HOH HOH . T 6 HOH B 56 356 83 HOH HOH . T 6 HOH B 57 357 99 HOH HOH . T 6 HOH B 58 358 4 HOH HOH . T 6 HOH B 59 359 73 HOH HOH . T 6 HOH B 60 360 97 HOH HOH . T 6 HOH B 61 361 137 HOH HOH . T 6 HOH B 62 362 13 HOH HOH . T 6 HOH B 63 363 110 HOH HOH . T 6 HOH B 64 364 101 HOH HOH . T 6 HOH B 65 365 210 HOH HOH . T 6 HOH B 66 366 21 HOH HOH . T 6 HOH B 67 367 108 HOH HOH . T 6 HOH B 68 368 152 HOH HOH . T 6 HOH B 69 369 92 HOH HOH . T 6 HOH B 70 370 213 HOH HOH . T 6 HOH B 71 371 76 HOH HOH . T 6 HOH B 72 372 154 HOH HOH . T 6 HOH B 73 373 107 HOH HOH . T 6 HOH B 74 374 109 HOH HOH . T 6 HOH B 75 375 129 HOH HOH . T 6 HOH B 76 376 148 HOH HOH . T 6 HOH B 77 377 3 HOH HOH . T 6 HOH B 78 378 126 HOH HOH . T 6 HOH B 79 379 117 HOH HOH . T 6 HOH B 80 380 112 HOH HOH . T 6 HOH B 81 381 102 HOH HOH . T 6 HOH B 82 382 222 HOH HOH . T 6 HOH B 83 383 223 HOH HOH . T 6 HOH B 84 384 234 HOH HOH . T 6 HOH B 85 385 181 HOH HOH . T 6 HOH B 86 386 115 HOH HOH . T 6 HOH B 87 387 170 HOH HOH . T 6 HOH B 88 388 127 HOH HOH . T 6 HOH B 89 389 166 HOH HOH . T 6 HOH B 90 390 144 HOH HOH . T 6 HOH B 91 391 159 HOH HOH . T 6 HOH B 92 392 235 HOH HOH . T 6 HOH B 93 393 226 HOH HOH . T 6 HOH B 94 394 77 HOH HOH . T 6 HOH B 95 395 195 HOH HOH . T 6 HOH B 96 396 167 HOH HOH . T 6 HOH B 97 397 221 HOH HOH . T 6 HOH B 98 398 228 HOH HOH . T 6 HOH B 99 399 62 HOH HOH . T 6 HOH B 100 400 134 HOH HOH . T 6 HOH B 101 401 219 HOH HOH . T 6 HOH B 102 402 208 HOH HOH . T 6 HOH B 103 403 164 HOH HOH . T 6 HOH B 104 404 138 HOH HOH . T 6 HOH B 105 405 227 HOH HOH . T 6 HOH B 106 406 212 HOH HOH . T 6 HOH B 107 407 193 HOH HOH . T 6 HOH B 108 408 187 HOH HOH . T 6 HOH B 109 409 218 HOH HOH . T 6 HOH B 110 410 111 HOH HOH . T 6 HOH B 111 411 161 HOH HOH . T 6 HOH B 112 412 139 HOH HOH . T 6 HOH B 113 413 197 HOH HOH . T 6 HOH B 114 414 177 HOH HOH . T 6 HOH B 115 415 74 HOH HOH . T 6 HOH B 116 416 5 HOH HOH . T 6 HOH B 117 417 176 HOH HOH . T 6 HOH B 118 418 153 HOH HOH . T 6 HOH B 119 419 189 HOH HOH . T 6 HOH B 120 420 209 HOH HOH . T 6 HOH B 121 421 165 HOH HOH . T 6 HOH B 122 422 232 HOH HOH . T 6 HOH B 123 423 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 4 21.499 -22.042 41.346 1 35.57 ? S DMS 206 A 1 HETATM 2 O O DMS . . . H 4 20.806 -23.327 41.204 1 36.96 ? O DMS 206 A 1 HETATM 3 C C1 DMS . . . H 4 21.905 -21.627 39.694 1 35.37 ? C1 DMS 206 A 1 HETATM 4 C C2 DMS . . . H 4 20.136 -20.932 41.57 1 35.72 ? C2 DMS 206 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #