data_6CM4 # _model_server_result.job_id cCTwzpicPZesB7y_giS-VQ _model_server_result.datetime_utc '2024-12-01 12:01:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6CM4 # _exptl.entry_id 6CM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.484 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CM4 _cell.length_a 50.979 _cell.length_b 72.523 _cell.length_c 151.307 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 107 1_555 A SG CYS 148 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 386 A CYS 399 1_555 A SG CYS 388 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C23 H27 F N4 O2' _chem_comp.formula_weight 410.484 _chem_comp.id 8NU _chem_comp.mon_nstd_flag . _chem_comp.name 3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C15 8NU sing 1 n y O14 N13 8NU sing 2 n y C21 C15 8NU doub 3 n y C21 C19 8NU sing 4 n y C15 C16 8NU sing 5 n y N13 C12 8NU doub 6 n y F20 C19 8NU sing 7 n n C19 C18 8NU doub 8 n y C12 C16 8NU sing 9 n y C12 C09 8NU sing 10 n n C16 C17 8NU doub 11 n y C10 C09 8NU sing 12 n n C10 C11 8NU sing 13 n n C18 C17 8NU sing 14 n y C09 C08 8NU sing 15 n n C11 N06 8NU sing 16 n n C08 C07 8NU sing 17 n n O23 C22 8NU doub 18 n n N06 C07 8NU sing 19 n n N06 C05 8NU sing 20 n n C05 C04 8NU sing 21 n n C04 C03 8NU sing 22 n n C22 C03 8NU sing 23 n n C22 N24 8NU sing 24 n n C25 N24 8NU sing 25 n n C25 C26 8NU sing 26 n n C03 C02 8NU doub 27 n n N24 C29 8NU sing 28 n n C26 C27 8NU sing 29 n n C02 N30 8NU sing 30 n n C02 C01 8NU sing 31 n n C29 N30 8NU doub 32 n n C29 C28 8NU sing 33 n n C27 C28 8NU sing 34 n n C01 H1 8NU sing 35 n n C01 H2 8NU sing 36 n n C01 H3 8NU sing 37 n n C04 H4 8NU sing 38 n n C04 H5 8NU sing 39 n n C05 H6 8NU sing 40 n n C05 H7 8NU sing 41 n n C07 H8 8NU sing 42 n n C07 H9 8NU sing 43 n n C08 H10 8NU sing 44 n n C08 H11 8NU sing 45 n n C09 H12 8NU sing 46 n n C10 H13 8NU sing 47 n n C10 H14 8NU sing 48 n n C11 H15 8NU sing 49 n n C11 H16 8NU sing 50 n n C17 H17 8NU sing 51 n n C18 H18 8NU sing 52 n n C21 H19 8NU sing 53 n n C25 H20 8NU sing 54 n n C25 H21 8NU sing 55 n n C26 H22 8NU sing 56 n n C26 H23 8NU sing 57 n n C27 H24 8NU sing 58 n n C27 H25 8NU sing 59 n n C28 H26 8NU sing 60 n n C28 H27 8NU sing 61 n n # _atom_sites.entry_id 6CM4 _atom_sites.fract_transf_matrix[1][1] 0.019616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8NU A 1 2001 2001 8NU 8NU . C 3 PEG A 1 2002 2002 PEG PEG . D 3 PEG A 1 2003 2003 PEG PEG . E 3 PEG A 1 2004 2004 PEG PEG . F 4 OLA A 1 2005 2005 OLA OLA . G 4 OLA A 1 2006 2006 OLA OLA . H 4 OLA A 1 2007 2007 OLA OLA . I 5 HOH A 1 2101 2101 HOH HOH . I 5 HOH A 2 2102 2102 HOH HOH . I 5 HOH A 3 2103 2103 HOH HOH . I 5 HOH A 4 2104 2104 HOH HOH . I 5 HOH A 5 2105 2105 HOH HOH . I 5 HOH A 6 2106 2106 HOH HOH . I 5 HOH A 7 2107 2107 HOH HOH . I 5 HOH A 8 2108 2108 HOH HOH . I 5 HOH A 9 2109 2109 HOH HOH . I 5 HOH A 10 2110 2110 HOH HOH . I 5 HOH A 11 2111 2111 HOH HOH . I 5 HOH A 12 2112 2112 HOH HOH . I 5 HOH A 13 2113 2113 HOH HOH . I 5 HOH A 14 2114 2114 HOH HOH . I 5 HOH A 15 2115 2115 HOH HOH . I 5 HOH A 16 2116 2116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8NU . . . B 2 5.798 4.52 -12.898 1 53.67 ? C01 8NU 2001 A 1 HETATM 2 C C02 8NU . . . B 2 7.144 4.033 -13.365 1 73.44 ? C02 8NU 2001 A 1 HETATM 3 C C03 8NU . . . B 2 8.262 4.6 -12.909 1 81.52 ? C03 8NU 2001 A 1 HETATM 4 C C04 8NU . . . B 2 8.206 5.746 -11.897 1 83.19 ? C04 8NU 2001 A 1 HETATM 5 C C05 8NU . . . B 2 8.798 5.236 -10.556 1 77.95 ? C05 8NU 2001 A 1 HETATM 6 C C07 8NU . . . B 2 9.857 7.323 -9.903 1 83.9 ? C07 8NU 2001 A 1 HETATM 7 C C08 8NU . . . B 2 10.085 8.347 -8.777 1 87.68 ? C08 8NU 2001 A 1 HETATM 8 C C09 8NU . . . B 2 10.598 7.582 -7.553 1 81.18 ? C09 8NU 2001 A 1 HETATM 9 C C10 8NU . . . B 2 9.569 6.528 -7.12 1 68.5 ? C10 8NU 2001 A 1 HETATM 10 C C11 8NU . . . B 2 9.363 5.565 -8.28 1 79.77 ? C11 8NU 2001 A 1 HETATM 11 C C12 8NU . . . B 2 10.978 8.513 -6.434 1 83.67 ? C12 8NU 2001 A 1 HETATM 12 C C15 8NU . . . B 2 11.604 9.387 -4.561 1 77.42 ? C15 8NU 2001 A 1 HETATM 13 C C16 8NU . . . B 2 11.346 8.184 -5.148 1 77.32 ? C16 8NU 2001 A 1 HETATM 14 C C17 8NU . . . B 2 11.48 6.976 -4.482 1 58.28 ? C17 8NU 2001 A 1 HETATM 15 C C18 8NU . . . B 2 11.893 7.042 -3.152 1 57.84 ? C18 8NU 2001 A 1 HETATM 16 C C19 8NU . . . B 2 12.158 8.271 -2.538 1 70.59 ? C19 8NU 2001 A 1 HETATM 17 C C21 8NU . . . B 2 12.017 9.471 -3.239 1 71.68 ? C21 8NU 2001 A 1 HETATM 18 C C22 8NU . . . B 2 9.544 4.089 -13.391 1 77.92 ? C22 8NU 2001 A 1 HETATM 19 C C25 8NU . . . B 2 10.828 2.55 -14.812 1 72.98 ? C25 8NU 2001 A 1 HETATM 20 C C26 8NU . . . B 2 10.659 1.689 -16.072 1 63.09 ? C26 8NU 2001 A 1 HETATM 21 C C27 8NU . . . B 2 9.633 0.613 -15.771 1 79.48 ? C27 8NU 2001 A 1 HETATM 22 C C28 8NU . . . B 2 8.257 1.284 -15.641 1 81.12 ? C28 8NU 2001 A 1 HETATM 23 C C29 8NU . . . B 2 8.311 2.465 -14.703 1 76 ? C29 8NU 2001 A 1 HETATM 24 F F20 8NU . . . B 2 12.555 8.29 -1.257 1 71.11 ? F20 8NU 2001 A 1 HETATM 25 N N06 8NU . . . B 2 8.882 6.272 -9.486 1 82.54 ? N06 8NU 2001 A 1 HETATM 26 N N13 8NU . . . B 2 11.047 9.842 -6.521 1 87.02 ? N13 8NU 2001 A 1 HETATM 27 N N24 8NU . . . B 2 9.552 3.033 -14.306 1 78.56 ? N24 8NU 2001 A 1 HETATM 28 N N30 8NU . . . B 2 7.209 2.946 -14.27 1 76.66 ? N30 8NU 2001 A 1 HETATM 29 O O14 8NU . . . B 2 11.404 10.328 -5.431 1 84.77 ? O14 8NU 2001 A 1 HETATM 30 O O23 8NU . . . B 2 10.714 4.653 -12.983 1 74.6 ? O23 8NU 2001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #