data_6CM9 # _model_server_result.job_id fd-RIkfCXJuFJ-hnMqQ91A _model_server_result.datetime_utc '2024-11-25 20:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1001}' # _entry.id 6CM9 # _exptl.entry_id 6CM9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CM9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OG1 THR 43 C THR 31 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 D OG1 THR 60 C THR 48 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 J O1G GTP . C GTP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc4 J O1B GTP . C GTP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 F OG1 THR 43 H THR 31 1_555 M MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 F OG1 THR 60 H THR 48 1_555 M MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 L O2G GTP . H GTP 1001 1_555 M MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc8 L O2B GTP . H GTP 1001 1_555 M MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6CM9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 GTP C 1 1001 1001 GTP GTP . K 8 MG C 1 1002 1002 MG MG . L 7 GTP H 1 1001 1001 GTP GTP . M 8 MG H 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . L 7 115.763 165.771 97.762 1 41.72 ? PG GTP 1001 H 1 HETATM 2 O O1G GTP . . . L 7 117.018 165.355 97.052 1 41.72 ? O1G GTP 1001 H 1 HETATM 3 O O2G GTP . . . L 7 114.623 164.916 97.28 1 41.72 ? O2G GTP 1001 H 1 HETATM 4 O O3G GTP . . . L 7 115.96 165.648 99.249 1 41.72 ? O3G GTP 1001 H 1 HETATM 5 O O3B GTP . . . L 7 115.419 167.289 97.403 1 41.72 ? O3B GTP 1001 H 1 HETATM 6 P PB GTP . . . L 7 114.945 167.494 95.896 1 41.72 ? PB GTP 1001 H 1 HETATM 7 O O1B GTP . . . L 7 115.869 168.452 95.201 1 41.72 ? O1B GTP 1001 H 1 HETATM 8 O O2B GTP . . . L 7 114.894 166.15 95.223 1 41.72 ? O2B GTP 1001 H 1 HETATM 9 O O3A GTP . . . L 7 113.478 168.125 95.983 1 41.72 ? O3A GTP 1001 H 1 HETATM 10 P PA GTP . . . L 7 112.83 168.668 94.622 1 41.72 ? PA GTP 1001 H 1 HETATM 11 O O1A GTP . . . L 7 113.346 167.852 93.467 1 41.72 ? O1A GTP 1001 H 1 HETATM 12 O O2A GTP . . . L 7 111.328 168.607 94.682 1 41.72 ? O2A GTP 1001 H 1 HETATM 13 O O5' GTP . . . L 7 113.325 170.185 94.461 1 41.72 ? O5' GTP 1001 H 1 HETATM 14 C C5' GTP . . . L 7 113.651 170.999 95.56 1 41.72 ? C5' GTP 1001 H 1 HETATM 15 C C4' GTP . . . L 7 113.223 172.411 95.196 1 41.72 ? C4' GTP 1001 H 1 HETATM 16 O O4' GTP . . . L 7 114.1 172.902 94.208 1 41.72 ? O4' GTP 1001 H 1 HETATM 17 C C3' GTP . . . L 7 111.838 172.422 94.586 1 41.72 ? C3' GTP 1001 H 1 HETATM 18 O O3' GTP . . . L 7 110.91 172.959 95.495 1 41.72 ? O3' GTP 1001 H 1 HETATM 19 C C2' GTP . . . L 7 111.934 173.334 93.389 1 41.72 ? C2' GTP 1001 H 1 HETATM 20 O O2' GTP . . . L 7 111.203 174.507 93.641 1 41.72 ? O2' GTP 1001 H 1 HETATM 21 C C1' GTP . . . L 7 113.408 173.66 93.239 1 41.72 ? C1' GTP 1001 H 1 HETATM 22 N N9 GTP . . . L 7 113.865 173.271 91.895 1 41.72 ? N9 GTP 1001 H 1 HETATM 23 C C8 GTP . . . L 7 114.175 172.006 91.483 1 41.72 ? C8 GTP 1001 H 1 HETATM 24 N N7 GTP . . . L 7 114.561 172.056 90.19 1 41.72 ? N7 GTP 1001 H 1 HETATM 25 C C5 GTP . . . L 7 114.496 173.335 89.767 1 41.72 ? C5 GTP 1001 H 1 HETATM 26 C C6 GTP . . . L 7 114.796 173.935 88.554 1 41.72 ? C6 GTP 1001 H 1 HETATM 27 O O6 GTP . . . L 7 115.175 173.261 87.603 1 41.72 ? O6 GTP 1001 H 1 HETATM 28 N N1 GTP . . . L 7 114.64 175.295 88.41 1 41.72 ? N1 GTP 1001 H 1 HETATM 29 C C2 GTP . . . L 7 114.209 176.052 89.476 1 41.72 ? C2 GTP 1001 H 1 HETATM 30 N N2 GTP . . . L 7 114.064 177.365 89.335 1 41.72 ? N2 GTP 1001 H 1 HETATM 31 N N3 GTP . . . L 7 113.927 175.45 90.685 1 41.72 ? N3 GTP 1001 H 1 HETATM 32 C C4 GTP . . . L 7 114.072 174.112 90.831 1 41.72 ? C4 GTP 1001 H 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #